NP-MRD: Showing NP-Card for Hydroxyvernolide (NP0051910)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-04-27 23:06:51 UTC

Updated at

2022-04-27 23:06:51 UTC

NP-MRD ID

NP0051910

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Hydroxyvernolide

Description

(1R,3S,4R,8S,13R,15R)-15-hydroxy-5-methylidene-6-oxo-7,14,16-trioxatetracyclo[8.4.3.0¹,¹³.0⁴,⁸]Heptadec-9-en-3-yl 2-(hydroxymethyl)prop-2-enoate belongs to the class of organic compounds known as beta hydroxy acids and derivatives. Beta hydroxy acids and derivatives are compounds containing a carboxylic acid substituted with a hydroxyl group on the C3 carbon atom. Hydroxyvernolide is found in Vernonia amygdalina and Vernonia colorata . Based on a literature review very few articles have been published on (1R,3S,4R,8S,13R,15R)-15-hydroxy-5-methylidene-6-oxo-7,14,16-trioxatetracyclo[8.4.3.0¹,¹³.0⁴,⁸]Heptadec-9-en-3-yl 2-(hydroxymethyl)prop-2-enoate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282201062D          

 27 30  0  0  1  0            999 V2000
    5.9514    0.3219    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0036    1.1452    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2547   -0.1199    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.4594   -0.9190    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.2828   -0.9712    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.5869   -0.2043    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3860    0.0005    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2661   -1.8114    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6057   -2.3933    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4053   -1.6276    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8874   -1.0415    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7994   -0.2594    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.0123   -0.0258    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7428   -0.8788    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0850   -1.7029    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7388   -2.3009    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2001   -0.2309    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6979    0.5425    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5822    0.4408    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.9071    1.1991    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4128    1.8596    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7376    2.6180    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5936    1.7618    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2687    1.0034    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0993    2.4223    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2801    2.3245    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5646    0.0489    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  3  1  1  1  0  0  0
  3  4  1  0  0  0  0
  4  5  1  1  0  0  0
  5  6  1  0  0  0  0
  1  6  1  0  0  0  0
  6  7  2  0  0  0  0
  4  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
  9 16  1  0  0  0  0
 14 17  1  1  0  0  0
 13 17  1  1  0  0  0
 13 18  1  0  0  0  0
 18 19  1  0  0  0  0
  3 19  1  0  0  0  0
 19 20  1  6  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 21 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 12 27  1  6  0  0  0
M  END

     RDKit          3D

 49 52  0  0  0  0  0  0  0  0999 V2000
    4.5117    0.3883   -1.2299 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3641    0.4605    0.0908 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5828    0.5799    0.9352 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6352   -0.5286    1.8127 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0280    0.4208    0.6613 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8847    0.4881    1.8968 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9445    0.3112   -0.1456 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5874    0.2651    0.3391 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0231    1.5094   -0.2874 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5063    1.2743   -0.3631 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7895    0.9349    0.9128 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4282    2.0063    0.3260 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.8885    1.6810    0.3103 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1663    0.2554    0.8925 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3606   -0.7446    0.0474 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5162   -1.6767    0.5046 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0627   -1.7476    0.4847 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6735   -1.8987    1.8745 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6690   -2.2715    1.8463 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3347   -2.7981    2.7927 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1406   -1.9320    0.5146 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2509   -2.3136   -0.0188 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0156   -1.0394   -0.0497 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.5134   -0.6748   -1.4797 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2155   -0.4828   -1.9143 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8599    0.8246   -1.6779 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.8374    1.6178   -2.3405 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6627    0.3017   -1.8746 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4856    0.4154   -1.6755 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6088    1.5129    1.5092 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4753    0.4891    0.2984 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0427   -0.3886    2.6007 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6671    0.3365    1.4354 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3910    1.7288   -1.2747 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2074    2.3525    0.3961 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1763    2.9858    0.8320 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4529    2.3547    1.0250 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4061    1.8098   -0.6342 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2363    0.0841    0.7698 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8067    0.4186    1.9008 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8759   -2.6452    1.0199 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8512   -2.8103    0.0686 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9517   -2.9438    0.5026 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5080   -2.0040   -1.0193 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2697   -1.1628   -1.1511 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0573   -1.4954   -1.9275 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0371    0.2208   -1.8364 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9809    0.9729   -2.3906 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4974    2.5575   -2.2743 H   0  0  0  0  0  0  0  0  0  0  0  0
  4  3  1  0
  3  2  1  0
  2  1  2  3
  2  5  1  0
  5  6  2  0
  5  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  1
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 15 16  2  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  2  0
 19 21  1  0
 21 22  2  3
 21 23  1  0
 23  8  1  0
 12 10  1  0
 23 17  1  0
 26 10  1  0
  4 32  1  0
  3 30  1  0
  3 31  1  0
  1 28  1  0
  1 29  1  0
  8 33  1  1
  9 34  1  0
  9 35  1  0
 12 36  1  1
 13 37  1  0
 13 38  1  0
 14 39  1  0
 14 40  1  0
 24 46  1  0
 24 47  1  0
 26 48  1  6
 27 49  1  0
 16 41  1  0
 17 42  1  6
 22 43  1  0
 22 44  1  0
 23 45  1  6
M  END


  Mrv1652304282201062D          

 27 30  0  0  1  0            999 V2000
    5.9514    0.3219    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0036    1.1452    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2547   -0.1199    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.4594   -0.9190    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.2828   -0.9712    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.5869   -0.2043    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3860    0.0005    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2661   -1.8114    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6057   -2.3933    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4053   -1.6276    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8874   -1.0415    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7994   -0.2594    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.0123   -0.0258    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7428   -0.8788    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0850   -1.7029    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7388   -2.3009    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2001   -0.2309    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6979    0.5425    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5822    0.4408    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.9071    1.1991    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4128    1.8596    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7376    2.6180    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5936    1.7618    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2687    1.0034    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0993    2.4223    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2801    2.3245    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5646    0.0489    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  3  1  1  1  0  0  0
  3  4  1  0  0  0  0
  4  5  1  1  0  0  0
  5  6  1  0  0  0  0
  1  6  1  0  0  0  0
  6  7  2  0  0  0  0
  4  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
  9 16  1  0  0  0  0
 14 17  1  1  0  0  0
 13 17  1  1  0  0  0
 13 18  1  0  0  0  0
 18 19  1  0  0  0  0
  3 19  1  0  0  0  0
 19 20  1  6  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 21 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 12 27  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0051910

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OCC(=C)C(=O)O[C@H]1C[C@@]23O[C@@H]2CCC(CO[C@H]3O)=C[C@@H]2OC(=O)C(=C)[C@H]12

> <INCHI_IDENTIFIER>
InChI=1S/C19H22O8/c1-9(7-20)16(21)26-13-6-19-14(27-19)4-3-11(8-24-18(19)23)5-12-15(13)10(2)17(22)25-12/h5,12-15,18,20,23H,1-4,6-8H2/b11-5-/t12-,13-,14+,15-,18+,19+/m0/s1

> <INCHI_KEY>
VPZCNCFYAPSUAL-VBFCZMEJSA-N

> <FORMULA>
C19H22O8

> <MOLECULAR_WEIGHT>
378.377

> <EXACT_MASS>
378.131467668

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
49

> <JCHEM_AVERAGE_POLARIZABILITY>
35.830062664548564

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,3S,4R,8S,9Z,13R,15R)-15-hydroxy-5-methylidene-6-oxo-7,14,16-trioxatetracyclo[8.4.3.0^{1,13}.0^{4,8}]heptadec-9-en-3-yl 2-(hydroxymethyl)prop-2-enoate

> <ALOGPS_LOGP>
-0.03

> <JCHEM_LOGP>
0.5127589229999989

> <ALOGPS_LOGS>
-1.85

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.896472797148949

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.16420049555923

> <JCHEM_PKA_STRONGEST_BASIC>
-2.8441180521630773

> <JCHEM_POLAR_SURFACE_AREA>
114.82000000000002

> <JCHEM_REFRACTIVITY>
91.00319999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
5.36e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,3S,4R,8S,9Z,13R,15R)-15-hydroxy-5-methylidene-6-oxo-7,14,16-trioxatetracyclo[8.4.3.0^{1,13}.0^{4,8}]heptadec-9-en-3-yl 2-(hydroxymethyl)prop-2-enoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0      11.109   0.601   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      11.207   2.138   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       9.809  -0.224   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      10.191  -1.716   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0      11.728  -1.813   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0      12.295  -0.381   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      13.787   0.001   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       9.830  -3.381   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       8.597  -4.467   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       8.223  -3.038   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       7.257  -1.944   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       7.092  -0.484   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.623  -0.048   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.120  -1.640   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.759  -3.179   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       6.979  -4.295   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       4.107  -0.431   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       6.903   1.013   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       8.553   0.823   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       9.160   2.238   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       8.237   3.471   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       8.844   4.887   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       6.708   3.289   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       6.102   1.873   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       5.785   4.522   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       4.256   4.339   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0       8.521   0.091   0.000  0.00  0.00           O+0
CONECT    1    2    3    6                                                  
CONECT    2    1                                                            
CONECT    3    1    4   19                                                  
CONECT    4    3    5    8                                                  
CONECT    5    4    6                                                       
CONECT    6    5    1    7                                                  
CONECT    7    6                                                            
CONECT    8    4    9                                                       
CONECT    9    8   10   16                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   27                                                  
CONECT   13   12   14   17   18                                             
CONECT   14   13   15   17                                                  
CONECT   15   14   16                                                       
CONECT   16   15    9                                                       
CONECT   17   14   13                                                       
CONECT   18   13   19                                                       
CONECT   19   18    3   20                                                  
CONECT   20   19   21                                                       
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26                                                       
CONECT   26   25                                                            
CONECT   27   12                                                            
MASTER        0    0    0    0    0    0    0    0   27    0   60    0
END

View in JSmol

Synonyms

Value	Source
(1R,3S,4R,8S,13R,15R)-15-Hydroxy-5-methylidene-6-oxo-7,14,16-trioxatetracyclo[8.4.3.0,.0,]heptadec-9-en-3-yl 2-(hydroxymethyl)prop-2-enoic acid	Generator

Chemical Formula

C₁₉H₂₂O₈

Average Mass

378.3770 Da

Monoisotopic Mass

378.13147 Da

IUPAC Name

(1R,3S,4R,8S,9Z,13R,15R)-15-hydroxy-5-methylidene-6-oxo-7,14,16-trioxatetracyclo[8.4.3.0^{1,13}.0^{4,8}]heptadec-9-en-3-yl 2-(hydroxymethyl)prop-2-enoate

Traditional Name

(1R,3S,4R,8S,9Z,13R,15R)-15-hydroxy-5-methylidene-6-oxo-7,14,16-trioxatetracyclo[8.4.3.0^{1,13}.0^{4,8}]heptadec-9-en-3-yl 2-(hydroxymethyl)prop-2-enoate

CAS Registry Number

Not Available

SMILES

OCC(=C)C(=O)O[C@H]1C[C@@]23O[C@@H]2CCC(CO[C@H]3O)=C[C@@H]2OC(=O)C(=C)[C@H]12

InChI Identifier

InChI=1S/C19H22O8/c1-9(7-20)16(21)26-13-6-19-14(27-19)4-3-11(8-24-18(19)23)5-12-15(13)10(2)17(22)25-12/h5,12-15,18,20,23H,1-4,6-8H2/b11-5-/t12-,13-,14+,15-,18+,19+/m0/s1

InChI Key

VPZCNCFYAPSUAL-VBFCZMEJSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Vernonia amygdalina	Plant	KNApSAcK
Vernonia colorata	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as beta hydroxy acids and derivatives. Beta hydroxy acids and derivatives are compounds containing a carboxylic acid substituted with a hydroxyl group on the C3 carbon atom.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Hydroxy acids and derivatives

Sub Class

Beta hydroxy acids and derivatives

Direct Parent

Beta hydroxy acids and derivatives

Alternative Parents

Substituents

Beta-hydroxy acid
Gamma butyrolactone
Dicarboxylic acid or derivatives
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Tetrahydrofuran
Lactone
Hemiacetal
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Ether
Oxirane
Dialkyl ether
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.03	ALOGPS
logP	0.51	ChemAxon
logS	-1.8	ALOGPS
pKa (Strongest Acidic)	11.16	ChemAxon
pKa (Strongest Basic)	-2.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	114.82 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	91 m³·mol⁻¹	ChemAxon
Polarizability	35.83 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162985271

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Hydroxyvernolide (NP0051910)

MOL for NP0051910 (Hydroxyvernolide)

3D MOL for NP0051910 (Hydroxyvernolide)

3D SDF for NP0051910 (Hydroxyvernolide)

3D-SDF for NP0051910 (Hydroxyvernolide)

PDB for NP0051910 (Hydroxyvernolide)

3D PDB for NP0051910 (Hydroxyvernolide)

SMILES for NP0051910 (Hydroxyvernolide)

INCHI for NP0051910 (Hydroxyvernolide)

Structure for NP0051910 (Hydroxyvernolide)

3D Structure for NP0051910 (Hydroxyvernolide)