NP-MRD: Showing NP-Card for Granilin (NP0051907)

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Record Information

Version

2.0

Created at

2022-04-27 23:06:32 UTC

Updated at

2022-04-27 23:06:32 UTC

NP-MRD ID

NP0051907

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Granilin

Description

Granilin belongs to the class of organic compounds known as eudesmanolides, secoeudesmanolides, and derivatives. These are terpenoids with a structure based on the eudesmanolide (a 3,5a,9-trimethyl-naphtho[1,2-b]furan-2-one derivative) or secoeudesmanolide (a 3,6-dimethyl-5-(pentan-2-yl)-1-benzofuran-2-one derivative) skeleton. Granilin is found in Ambrosia polystachya, Artemisia aschurbajewii, Artemisia ashurbajevii, Carpesium abrotanoides and Inula grandis. Granilin was first documented in 2016 (PMID: 28901108). Based on a literature review very few articles have been published on Granilin.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 39 41  0  0  0  0  0  0  0  0999 V2000
    3.7736    1.9631   -0.9162 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3265    0.8861   -0.3224 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0004   -0.3936   -0.2244 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0702   -0.7688   -0.8120 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2735   -1.1783    0.6413 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9722   -0.6718    0.8779 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9852   -1.5328    0.1614 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3783   -0.9187    0.0014 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8622   -1.2571   -1.3966 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3931   -1.4680    0.9624 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1387   -2.5122    0.4084 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3227   -0.4681    1.5288 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7926    0.5910    0.5744 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.8374    0.2168   -0.2240 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6264    1.1306   -0.1810 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7767    2.0401   -1.1381 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3298    0.5768    0.2216 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8529    1.1222   -0.4812 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0465    0.7409    0.3724 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1917    2.8743   -0.9346 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7419    2.0043   -1.4184 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8044   -0.7354    1.9730 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4236   -1.8514   -0.8069 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8544   -2.4626    0.7561 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9610   -1.3835   -1.4411 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5078   -0.5684   -2.1621 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4419   -2.2698   -1.6560 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8123   -1.9335    1.8057 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1088   -2.3666    0.5277 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8517    0.0159    2.4198 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2208   -1.0161    1.9273 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1547    1.4505    1.2128 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6881    0.3645    0.2803 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7829    2.3818   -1.3556 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9679    2.4515   -1.7019 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2081    0.7277    1.3254 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8470    2.2157   -0.6208 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0155    0.5971   -1.4680 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9846    1.4059    1.2832 H   0  0  0  0  0  0  0  0  0  0  0  0
  8  9  1  6
  8  7  1  0
  7  6  1  0
  6  5  1  0
  5  3  1  0
  3  4  2  0
  3  2  1  0
  2  1  2  3
  2 19  1  0
 19 18  1  0
 18 17  1  0
 17 15  1  0
 15 16  2  3
 15 13  1  0
 13 14  1  0
 13 12  1  0
 12 10  1  0
 10 11  1  0
 17  8  1  0
 10  8  1  0
 19  6  1  0
  9 25  1  0
  9 26  1  0
  9 27  1  0
  7 23  1  0
  7 24  1  0
  6 22  1  1
  1 20  1  0
  1 21  1  0
 19 39  1  1
 18 37  1  0
 18 38  1  0
 17 36  1  1
 16 34  1  0
 16 35  1  0
 13 32  1  1
 14 33  1  0
 12 30  1  0
 12 31  1  0
 10 28  1  1
 11 29  1  0
M  END


  Mrv1652304282201062D          

 19 21  0  0  1  0            999 V2000
    4.7812    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7812    1.9354    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.0668    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668    3.1729    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    1.9354    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.3523    1.1104    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.0668    0.6979    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.0668   -0.1271    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    1.1104    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9233    1.9354    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6378    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    2.1904    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8838    2.9750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6538    1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1712    1.5229    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    0.8555    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    0.2854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4957    2.3479    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  5  3  1  1  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  1  7  1  0  0  0  0
  7  8  1  1  0  0  0
  6  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
  5 12  1  0  0  0  0
 11 13  1  1  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
 10 17  1  1  0  0  0
  6 18  1  1  0  0  0
  2 19  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0051907

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@]12C[C@H]3OC(=O)C(=C)[C@H]3C[C@H]1C(=C)[C@@H](O)C[C@H]2O

> <INCHI_IDENTIFIER>
InChI=1S/C15H20O4/c1-7-9-4-10-8(2)11(16)5-13(17)15(10,3)6-12(9)19-14(7)18/h9-13,16-17H,1-2,4-6H2,3H3/t9-,10+,11+,12-,13-,15-/m1/s1

> <INCHI_KEY>
ZEIYNPAINVEWGP-NQHOMTGGSA-N

> <FORMULA>
C15H20O4

> <MOLECULAR_WEIGHT>
264.321

> <EXACT_MASS>
264.136159124

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
39

> <JCHEM_AVERAGE_POLARIZABILITY>
27.78685998562311

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3aR,4aS,6S,8R,8aR,9aR)-6,8-dihydroxy-8a-methyl-3,5-dimethylidene-dodecahydronaphtho[2,3-b]furan-2-one

> <ALOGPS_LOGP>
0.98

> <JCHEM_LOGP>
0.8235591820000003

> <ALOGPS_LOGS>
-1.67

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.97015204767904

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.264701297380867

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9767066928764256

> <JCHEM_POLAR_SURFACE_AREA>
66.76

> <JCHEM_REFRACTIVITY>
69.1848

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
5.64e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
granilin

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       8.925   2.073   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       8.925   3.613   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.591   4.383   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       7.591   5.923   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.258   3.613   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.258   2.073   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.591   1.303   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       7.591  -0.237   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       4.924   1.303   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       3.590   2.073   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       3.590   3.613   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.924   4.383   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.126   4.089   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.650   5.553   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.220   2.843   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      -0.320   2.843   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0       2.126   1.597   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       6.258   0.533   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      10.259   4.383   0.000  0.00  0.00           O+0
CONECT    1    2    7                                                       
CONECT    2    1    3   19                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   12                                                  
CONECT    6    5    7    9   18                                             
CONECT    7    6    1    8                                                  
CONECT    8    7                                                            
CONECT    9    6   10                                                       
CONECT   10    9   11   17                                                  
CONECT   11   10   12   13                                                  
CONECT   12   11    5                                                       
CONECT   13   11   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   10                                                       
CONECT   18    6                                                            
CONECT   19    2                                                            
MASTER        0    0    0    0    0    0    0    0   19    0   42    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₂₀O₄

Average Mass

264.3210 Da

Monoisotopic Mass

264.13616 Da

IUPAC Name

(3aR,4aS,6S,8R,8aR,9aR)-6,8-dihydroxy-8a-methyl-3,5-dimethylidene-dodecahydronaphtho[2,3-b]furan-2-one

Traditional Name

granilin

CAS Registry Number

Not Available

SMILES

C[C@@]12C[C@H]3OC(=O)C(=C)[C@H]3C[C@H]1C(=C)[C@@H](O)C[C@H]2O

InChI Identifier

InChI=1S/C15H20O4/c1-7-9-4-10-8(2)11(16)5-13(17)15(10,3)6-12(9)19-14(7)18/h9-13,16-17H,1-2,4-6H2,3H3/t9-,10+,11+,12-,13-,15-/m1/s1

InChI Key

ZEIYNPAINVEWGP-NQHOMTGGSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Ambrosia polystachya	Plant	KNApSAcK
Artemisia aschurbajewii	LOTUS Database	35616633
Artemisia ashurbajevii	Plant	KNApSAcK
Carpesium abrotanoides	Plant	KNApSAcK
Inula grandis	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as eudesmanolides, secoeudesmanolides, and derivatives. These are terpenoids with a structure based on the eudesmanolide (a 3,5a,9-trimethyl-naphtho[1,2-b]furan-2-one derivative) or secoeudesmanolide (a 3,6-dimethyl-5-(pentan-2-yl)-1-benzofuran-2-one derivative) skeleton.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Eudesmanolides, secoeudesmanolides, and derivatives

Alternative Parents

Substituents

Eudesmanolide
Sesquiterpenoid
Naphthofuran
Gamma butyrolactone
Cyclic alcohol
Tetrahydrofuran
Enoate ester
Alpha,beta-unsaturated carboxylic ester
Secondary alcohol
Lactone
Carboxylic acid ester
Oxacycle
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organoheterocyclic compound
Organooxygen compound
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Alcohol
Carbonyl group
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

eudesmane sesquiterpenoid (CHEBI:5536 )
Eudesmanes (C09470 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.98	ALOGPS
logP	0.82	ChemAxon
logS	-1.7	ALOGPS
pKa (Strongest Acidic)	14.26	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	66.76 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	69.18 m³·mol⁻¹	ChemAxon
Polarizability	27.79 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00003296

Chemspider ID

390737

KEGG Compound ID

C09470

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

442254

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Yang YX: [Studies on sesquiterpene lactones from Carpesium faberi]. Zhongguo Zhong Yao Za Zhi. 2016 Jun;41(11):2105-2111. doi: 10.4268/cjcmm20161121. [PubMed:28901108 ]

Showing NP-Card for Granilin (NP0051907)

MOL for NP0051907 (Granilin)

3D MOL for NP0051907 (Granilin)

3D SDF for NP0051907 (Granilin)

3D-SDF for NP0051907 (Granilin)

PDB for NP0051907 (Granilin)

3D PDB for NP0051907 (Granilin)

SMILES for NP0051907 (Granilin)

INCHI for NP0051907 (Granilin)

Structure for NP0051907 (Granilin)

3D Structure for NP0051907 (Granilin)