NP-MRD: Showing NP-Card for Allamandin (NP0051760)

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Record Information

Version

2.0

Created at

2022-04-27 23:00:13 UTC

Updated at

2022-04-27 23:00:14 UTC

NP-MRD ID

NP0051760

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Allamandin

Description

Methyl (1R,4S,5S,6S,8S,10S,11E,14S)-11-ethylidene-6-hydroxy-12-oxo-7,9,13-trioxatetracyclo[6.5.1.0¹,¹⁰.0⁴,¹⁴]Tetradec-2-ene-5-carboxylate belongs to the class of organic compounds known as terpene lactones. These are prenol lipids containing a lactone ring. Allamandin is found in Allamanda cathartica , Allamanda schottii and Plumeria rubra. Based on a literature review very few articles have been published on methyl (1R,4S,5S,6S,8S,10S,11E,14S)-11-ethylidene-6-hydroxy-12-oxo-7,9,13-trioxatetracyclo[6.5.1.0¹,¹⁰.0⁴,¹⁴]Tetradec-2-ene-5-carboxylate.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 38 41  0  0  0  0  0  0  0  0999 V2000
   -4.6298   -0.3157    0.2515 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5817   -0.1552    1.2948 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3853    0.1617    0.8940 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1858    0.3711    1.7817 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1808    0.4817    3.0508 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0687    0.4168    0.8858 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5729   -0.4025   -0.1102 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3293   -1.6484    0.4797 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7430   -2.1268   -0.1755 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1742   -1.1427   -1.2212 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9714    0.0223   -0.8567 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6050   -0.0919    0.4787 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5007   -1.1921    1.0805 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2982    0.9170    1.1026 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8975    0.7785    2.3835 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3998    1.3631   -1.1840 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.9976    1.9322   -2.3392 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0640    1.5306   -1.3525 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6086    0.5713   -2.0802 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.9762    0.4011   -1.6123 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7725    0.4106   -0.3410 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1698   -0.6644   -1.4585 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.9655    0.6631   -0.1524 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2770   -0.9569   -0.5875 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5290   -0.8095    0.6716 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7773   -0.2906    2.3554 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8320   -2.2176    1.3023 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2706   -3.0824   -0.0190 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5237   -1.7156   -2.1271 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8945   -0.0427   -1.5449 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1253   -0.3027    2.6106 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2405    1.1293    3.1965 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8788    1.2875    2.3899 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7163    2.0461   -0.3663 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3793    1.9881   -3.0846 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5739    0.6589   -3.1584 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4621    1.5224   -0.2212 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8022   -1.4954   -1.8575 H   0  0  0  0  0  0  0  0  0  0  0  0
 15 14  1  0
 14 12  1  0
 12 13  2  0
 12 11  1  0
 11 10  1  0
 10  9  1  0
  9  8  2  0
  8  7  1  0
  7  6  1  1
  6  4  1  0
  4  5  2  0
  4  3  1  0
  3  2  2  0
  2  1  1  0
  3 21  1  0
 21 20  1  0
 20 19  1  0
 19 18  1  0
 18 16  1  0
 16 17  1  0
 19 22  1  0
 16 11  1  0
 22 10  1  0
 21  7  1  0
 22  7  1  0
 15 31  1  0
 15 32  1  0
 15 33  1  0
 11 30  1  6
 10 29  1  6
  9 28  1  0
  8 27  1  0
  2 26  1  0
  1 23  1  0
  1 24  1  0
  1 25  1  0
 21 37  1  1
 19 36  1  6
 16 34  1  1
 17 35  1  0
 22 38  1  6
M  END


  Mrv1652304282201002D          

 22 25  0  0  1  0            999 V2000
    1.9527    2.0945    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7561    2.2819    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3202    1.6798    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0807    0.8903    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.2773    0.7029    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7133    1.3050    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8884    1.2888    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6490    0.4993    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3259    0.0276    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6181    2.0682    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2758    2.5662    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2067    2.0520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7047    2.7097    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3841    3.4698    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4462    1.2625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2256    0.9921    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2307    0.7908    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6447    0.2883    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4482    0.4757    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4053   -0.5012    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9693   -1.1033    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1236    1.8672    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  6  5  1  1  0  0  0
  1  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  5  9  1  1  0  0  0
  7 10  1  0  0  0  0
 10 11  1  6  0  0  0
  1 11  1  1  0  0  0
 10 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 12 15  1  0  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
  7 17  1  1  0  0  0
  4 18  1  1  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
  3 22  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0051760

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC(=O)[C@H]1[C@H]2C=C[C@]34OC(=O)\C(=C\C)[C@@H]3O[C@@H](O[C@@H]1O)[C@@H]24

> <INCHI_IDENTIFIER>
InChI=1S/C15H16O7/c1-3-6-10-15(22-11(6)16)5-4-7-8(12(17)19-2)13(18)21-14(20-10)9(7)15/h3-5,7-10,13-14,18H,1-2H3/b6-3+/t7-,8-,9-,10+,13+,14+,15-/m1/s1

> <INCHI_KEY>
UEOKCUGZTJHPBW-HQWUMFAHSA-N

> <FORMULA>
C15H16O7

> <MOLECULAR_WEIGHT>
308.286

> <EXACT_MASS>
308.089602855

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
38

> <JCHEM_AVERAGE_POLARIZABILITY>
29.14750495776079

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
methyl (1R,4S,5S,6S,8S,10S,11E,14S)-11-ethylidene-6-hydroxy-12-oxo-7,9,13-trioxatetracyclo[6.5.1.0^{1,10}.0^{4,14}]tetradec-2-ene-5-carboxylate

> <ALOGPS_LOGP>
0.71

> <JCHEM_LOGP>
0.8637245826666667

> <ALOGPS_LOGS>
-1.25

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.85137669724165

> <JCHEM_PKA_STRONGEST_BASIC>
-4.152556906144654

> <JCHEM_POLAR_SURFACE_AREA>
91.29

> <JCHEM_REFRACTIVITY>
71.90000000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.73e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
methyl (1R,4S,5S,6S,8S,10S,11E,14S)-11-ethylidene-6-hydroxy-12-oxo-7,9,13-trioxatetracyclo[6.5.1.0^{1,10}.0^{4,14}]tetradec-2-ene-5-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       3.645   3.910   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       5.145   4.260   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       6.198   3.136   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.751   1.662   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.251   1.312   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.198   2.436   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.658   2.406   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.212   0.932   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.475   0.052   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.154   3.861   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       2.382   4.790   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      -0.386   3.830   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.316   5.058   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.717   6.477   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -0.833   2.357   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      -2.288   1.852   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0       0.431   1.476   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       6.804   0.538   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       8.303   0.888   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0       6.357  -0.936   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       7.409  -2.060   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       7.697   3.486   0.000  0.00  0.00           O+0
CONECT    1    2    6   11                                                  
CONECT    2    1    3                                                       
CONECT    3    2    4   22                                                  
CONECT    4    3    5   18                                                  
CONECT    5    4    6    9                                                  
CONECT    6    5    1    7                                                  
CONECT    7    6    8   10   17                                             
CONECT    8    7    9                                                       
CONECT    9    8    5                                                       
CONECT   10    7   11   12                                                  
CONECT   11   10    1                                                       
CONECT   12   10   13   15                                                  
CONECT   13   12   14                                                       
CONECT   14   13                                                            
CONECT   15   12   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15    7                                                       
CONECT   18    4   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20                                                            
CONECT   22    3                                                            
MASTER        0    0    0    0    0    0    0    0   22    0   50    0
END

View in JSmol

Synonyms

Value	Source
Methyl (1R,4S,5S,6S,8S,10S,11E,14S)-11-ethylidene-6-hydroxy-12-oxo-7,9,13-trioxatetracyclo[6.5.1.0,.0,]tetradec-2-ene-5-carboxylic acid	Generator

Chemical Formula

C₁₅H₁₆O₇

Average Mass

308.2860 Da

Monoisotopic Mass

308.08960 Da

IUPAC Name

methyl (1R,4S,5S,6S,8S,10S,11E,14S)-11-ethylidene-6-hydroxy-12-oxo-7,9,13-trioxatetracyclo[6.5.1.0^{1,10}.0^{4,14}]tetradec-2-ene-5-carboxylate

Traditional Name

methyl (1R,4S,5S,6S,8S,10S,11E,14S)-11-ethylidene-6-hydroxy-12-oxo-7,9,13-trioxatetracyclo[6.5.1.0^{1,10}.0^{4,14}]tetradec-2-ene-5-carboxylate

CAS Registry Number

Not Available

SMILES

COC(=O)[C@H]1[C@H]2C=C[C@]34OC(=O)\C(=C\C)[C@@H]3O[C@@H](O[C@@H]1O)[C@@H]24

InChI Identifier

InChI=1S/C15H16O7/c1-3-6-10-15(22-11(6)16)5-4-7-8(12(17)19-2)13(18)21-14(20-10)9(7)15/h3-5,7-10,13-14,18H,1-2H3/b6-3+/t7-,8-,9-,10+,13+,14+,15-/m1/s1

InChI Key

UEOKCUGZTJHPBW-HQWUMFAHSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Allamanda cathartica	Plant	KNApSAcK
Allamanda neriifolia	LOTUS Database	35616633
Plumeria rubra	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as terpene lactones. These are prenol lipids containing a lactone ring.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Terpene lactones

Alternative Parents

Substituents

Terpene lactone
Iridoid-skeleton
Monoterpenoid
Furopyran
Furofuran
Beta-hydroxy acid
Pyran
Oxane
Monosaccharide
Hydroxy acid
Gamma butyrolactone
Dicarboxylic acid or derivatives
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Methyl ester
Tetrahydrofuran
Furan
Lactone
Hemiacetal
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Carboxylic acid derivative
Acetal
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.71	ALOGPS
logP	0.86	ChemAxon
logS	-1.2	ALOGPS
pKa (Strongest Acidic)	11.85	ChemAxon
pKa (Strongest Basic)	-4.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	91.29 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	71.9 m³·mol⁻¹	ChemAxon
Polarizability	29.15 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

14036036

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Allamandin (NP0051760)

MOL for NP0051760 (Allamandin)

3D MOL for NP0051760 (Allamandin)

3D SDF for NP0051760 (Allamandin)

3D-SDF for NP0051760 (Allamandin)

PDB for NP0051760 (Allamandin)

3D PDB for NP0051760 (Allamandin)

SMILES for NP0051760 (Allamandin)

INCHI for NP0051760 (Allamandin)

Structure for NP0051760 (Allamandin)

3D Structure for NP0051760 (Allamandin)