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Record Information
Version2.0
Created at2022-04-27 22:57:48 UTC
Updated at2022-04-27 22:57:48 UTC
NP-MRD IDNP0051690
Secondary Accession NumbersNone
Natural Product Identification
Common Name6-Deoxyjacareubin
Description6-Deoxyjacareubin belongs to the class of organic compounds known as pyranoxanthones. These are organic aromatic compounds containing a pyran or a hydrogenated derivative fused to a xanthone ring system. 6-Deoxyjacareubin is found in Calophyllum bracteatum, Calophyllum brasilience, Calophyllum brasiliense, Calophyllum brasiliensis, Calophyllum calaba, Calophyllum cuneifolium, Calophyllum fragrans, Calophyllum inophyllum , Calophyllum neo-ebudicum, Calophyllum scriblitifolium, Calophyllum soulattri, Calophyllum tomentosum, Calophyllum trapezifolium, Calophyllum zeylanicum, Cratoxylum formosum, Garcinia bracteata, Garcinia lancilimba, Garcinia merguensis, Garcinia nigrolineata , Garcinia xanthochymus, Hypericum brasiliense, Kielmeyera coriacea Mart., Kielmeyera ferruginea A.P.Duarte., Kielmeyera pumila, Kielmeyera speciosa, Cudrania cochinchinensis , Maclura pomifera, Mourera fluviatilis and Toxylon pomiferum. 6-Deoxyjacareubin is an extremely weak basic (essentially neutral) compound (based on its pKa).
Structure
Thumb
Synonyms
ValueSource
5,10-Dihydroxy-2,2-dimethylpyrano(3,2-b)xanthen-6(2H)-oneMeSH
Chemical FormulaC18H14O5
Average Mass310.3050 Da
Monoisotopic Mass310.08412 Da
IUPAC Name5,10-dihydroxy-2,2-dimethyl-2,6-dihydro-1,11-dioxatetracen-6-one
Traditional Name6-deoxyjacareubin
CAS Registry NumberNot Available
SMILES
CC1(C)OC2=CC3=C(C(O)=C2C=C1)C(=O)C1=CC=CC(O)=C1O3
InChI Identifier
InChI=1S/C18H14O5/c1-18(2)7-6-9-12(23-18)8-13-14(15(9)20)16(21)10-4-3-5-11(19)17(10)22-13/h3-8,19-20H,1-2H3
InChI KeyNHNIESSJWQBRJW-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Calophyllum bracteatumPlant
Calophyllum brasiliencePlant
Calophyllum brasilienseLOTUS Database
Calophyllum brasiliensisPlant
Calophyllum calabaPlant
Calophyllum cuneifoliumPlant
Calophyllum fragransPlant
Calophyllum inophyllumPlant
Calophyllum neo-ebudicumPlant
Calophyllum scriblitifoliumPlant
Calophyllum soulattriPlant
Calophyllum tomentosumPlant
Calophyllum trapezifoliumPlant
Calophyllum zeylanicumPlant
Cratoxylum formosumLOTUS Database
Garcinia bracteata (nom. inval.)Plant
Garcinia lancilimbaPlant
Garcinia merguensisPlant
Garcinia nigrolineataPlant
Garcinia xanthochymusLOTUS Database
Hypericum brasilienseLOTUS Database
Kielmeyera coriacea Mart.Plant
Kielmeyera ferruginea A.P.Duarte.Plant
Kielmeyera pumilaLOTUS Database
Kielmeyera speciosaPlant
Maclura cochinchinensisPlant
Maclura pomiferaLOTUS Database
Mourera fluviatilisLOTUS Database
Toxylon pomiferum-
Chemical Taxonomy
Description Belongs to the class of organic compounds known as pyranoxanthones. These are organic aromatic compounds containing a pyran or a hydrogenated derivative fused to a xanthone ring system.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassBenzopyrans
Sub Class1-benzopyrans
Direct ParentPyranoxanthones
Alternative Parents
Substituents
  • Pyranoxanthone
  • Pyranochromene
  • 2,2-dimethyl-1-benzopyran
  • Chromone
  • 1-hydroxy-4-unsubstituted benzenoid
  • 1-hydroxy-2-unsubstituted benzenoid
  • Alkyl aryl ether
  • Pyranone
  • Pyran
  • Benzenoid
  • Heteroaromatic compound
  • Vinylogous acid
  • Ether
  • Oxacycle
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organic oxide
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.89ALOGPS
logP3.9ChemAxon
logS-3.8ALOGPS
pKa (Strongest Acidic)7.72ChemAxon
pKa (Strongest Basic)-3.8ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area75.99 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity85.17 m³·mol⁻¹ChemAxon
Polarizability32.09 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00002947
Chemspider IDNot Available
KEGG Compound IDC10059
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound5281629
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General ReferencesNot Available