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Record Information
Version2.0
Created at2022-04-27 22:55:57 UTC
Updated at2022-04-27 22:55:57 UTC
NP-MRD IDNP0051639
Secondary Accession NumbersNone
Natural Product Identification
Common Name1,3-Dihydroxy-2-methyl-9,10-anthraquinone
DescriptionRubiadin belongs to the class of organic compounds known as hydroxyanthraquinones. Hydroxyanthraquinones are compounds containing a hydroxyanthraquinone moiety, which consists of an anthracene bearing a quinone, and hydroxyl group. 1,3-Dihydroxy-2-methyl-9,10-anthraquinone is found in Cinchona ledgeriana, Cinchona pubescens, Coelospermum paniculatum, Commitheca liebrechtsiana, Coprosma linariifolia Hook.f., Coprosma lucida, Coprosma robusta , Coprosma rotundifolia, Coprosma spp., Coprosma tenuicaulis, Hedyotis capitellata , Faramea occidentalis, Galium aparine, Galium rubioides, Galium spp., Galium verum, Gynochthodes jasminoides, Morinda umbellata, Oldenlandia hedyotidea, Heterophyllaea pustulata, Hymenodictyon excelsum , Hymenodictyon orixense, Morinda angustifolia, Morinda citrifolia , Morinda officinalis , Morinda pandurifolia, Morinda tinctoria var.tomentosa. , Ophiorrhiza hayatana, Plocama pendula, Prismatomeris fragrans, Prismatomeris sessiliflora, Prismatomeris tetrandra, Proclema pendula, Rennellia elliptica, Rubia cordifolia , Rubia lanceolata, Rubia tinctorum , Rubia wallichiana, Rubia wallichiana DECNE , Rubia yunnanensis and Tectona grandis . 1,3-Dihydroxy-2-methyl-9,10-anthraquinone was first documented in 1997 (PMID: 9425750). Rubiadin is an extremely weak basic (essentially neutral) compound (based on its pKa) (PMID: 10410466) (PMID: 16213120) (PMID: 19793347) (PMID: 20965744) (PMID: 22822668) (PMID: 24062780).
Structure
Thumb
Synonyms
ValueSource
1,3-Dihydroxy-2-methyl-9,10-anthracenedioneMeSH
Chemical FormulaC15H10O4
Average Mass254.2410 Da
Monoisotopic Mass254.05791 Da
IUPAC Name1,3-dihydroxy-2-methyl-9,10-dihydroanthracene-9,10-dione
Traditional Namerubiadin
CAS Registry NumberNot Available
SMILES
CC1=C(O)C=C2C(=O)C3=CC=CC=C3C(=O)C2=C1O
InChI Identifier
InChI=1S/C15H10O4/c1-7-11(16)6-10-12(13(7)17)15(19)9-5-3-2-4-8(9)14(10)18/h2-6,16-17H,1H3
InChI KeyIRZTUXPRIUZXMP-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Cinchona calisayaPlant
Cinchona pubescensLOTUS Database
Coelospermum paniculatumLOTUS Database
Commitheca liebrechtsiana-
Coprosma linariifoliaPlant
Coprosma lucidaLOTUS Database
Coprosma robustaPlant
Coprosma rotundifoliaPlant
Coprosma spp.Plant
Coprosma tenuicaulisPlant
Dimetia capitellataPlant
Faramea occidentalisLOTUS Database
Galium aparineLOTUS Database
Galium rubioidesLOTUS Database
Galium spp.Plant
Galium verumLOTUS Database
Gynochthodes jasminoidesLOTUS Database
Gynochthodes umbellataPlant
Hedyotis hedyotideaLOTUS Database
Heterophyllaea pustulataLOTUS Database
Hymenodictyon excelsumPlant
Hymenodictyon orixenseLOTUS Database
Morinda angustifoliaLOTUS Database
Morinda citrifoliaPlant
Morinda officinalisPlant
Morinda pandurifoliaPlant
Morinda tinctoria var.tomentosa.Plant
Ophiorrhiza hayatanaLOTUS Database
Plocama pendulaPlant
Prismatomeris fragransLOTUS Database
Prismatomeris sessilifloraLOTUS Database
Prismatomeris tetrandraPlant
Proclema pendula-
Rennellia ellipticaLOTUS Database
Rubia cordifoliaPlant
Rubia lanceolataLOTUS Database
Rubia tinctorumPlant
Rubia wallichianaLOTUS Database
Rubia wallichiana DECNEPlant
Rubia yunnanensisPlant
Tectona grandisPlant
Chemical Taxonomy
Description Belongs to the class of organic compounds known as hydroxyanthraquinones. Hydroxyanthraquinones are compounds containing a hydroxyanthraquinone moiety, which consists of an anthracene bearing a quinone, and hydroxyl group.
KingdomOrganic compounds
Super ClassBenzenoids
ClassAnthracenes
Sub ClassAnthraquinones
Direct ParentHydroxyanthraquinones
Alternative Parents
Substituents
  • Hydroxyanthraquinone
  • Aryl ketone
  • 1-hydroxy-4-unsubstituted benzenoid
  • 1-hydroxy-2-unsubstituted benzenoid
  • Vinylogous acid
  • Ketone
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Aromatic homopolycyclic compound
Molecular FrameworkAromatic homopolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.08ALOGPS
logP3.47ChemAxon
logS-3.2ALOGPS
pKa (Strongest Acidic)7.81ChemAxon
pKa (Strongest Basic)-5.3ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area74.6 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity70.15 m³·mol⁻¹ChemAxon
Polarizability25.54 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00002862
Chemspider IDNot Available
KEGG Compound IDC10402
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkRubiadin
METLIN IDNot Available
PubChem Compound124062
PDB IDNot Available
ChEBI ID69533
Good Scents IDNot Available
References
General References
  1. Tripathi YB, Sharma M: Comparison of the antioxidant action of the alcoholic extract of Rubia cordifolia with rubiadin. Indian J Biochem Biophys. 1998 Oct;35(5):313-6. [PubMed:10410466 ]
  2. Rao GM, Rao CV, Pushpangadan P, Shirwaikar A: Hepatoprotective effects of rubiadin, a major constituent of Rubia cordifolia Linn. J Ethnopharmacol. 2006 Feb 20;103(3):484-90. doi: 10.1016/j.jep.2005.08.073. Epub 2005 Oct 5. [PubMed:16213120 ]
  3. Inoue K, Yoshida M, Takahashi M, Fujimoto H, Shibutani M, Hirose M, Nishikawa A: Carcinogenic potential of alizarin and rubiadin, components of madder color, in a rat medium-term multi-organ bioassay. Cancer Sci. 2009 Dec;100(12):2261-7. doi: 10.1111/j.1349-7006.2009.01342.x. Epub 2009 Sep 2. [PubMed:19793347 ]
  4. Comini LR, Montoya SC, Paez PL, Arguello GA, Albesa I, Cabrera JL: Antibacterial activity of anthraquinone derivatives from Heterophyllaea pustulata (Rubiaceae). J Photochem Photobiol B. 2011 Feb 7;102(2):108-14. doi: 10.1016/j.jphotobiol.2010.09.009. Epub 2010 Sep 29. [PubMed:20965744 ]
  5. Lan MS, Luo C, Tan CH, Chen L, Wei S, Zhu DY: [Study on chemical constituents of the ethyl acetate extract from Blumea aromatica]. Zhong Yao Cai. 2012 Feb;35(2):229-31. [PubMed:22822668 ]
  6. Bussmann RW, Hennig L, Giannis A, Ortwein J, Kutchan TM, Feng X: Anthraquinone Content in Noni (Morinda citrifolia L.). Evid Based Complement Alternat Med. 2013;2013:208378. doi: 10.1155/2013/208378. Epub 2013 Aug 26. [PubMed:24062780 ]
  7. Tripathi YB, Sharma M, Manickam M: Rubiadin, a new antioxidant from Rubia cordifolia. Indian J Biochem Biophys. 1997 Jun;34(3):302-6. [PubMed:9425750 ]