NP-MRD: Showing NP-Card for Aspidinol (NP0051541)

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Record Information

Version

2.0

Created at

2022-04-27 22:52:10 UTC

Updated at

2022-04-27 22:52:10 UTC

NP-MRD ID

NP0051541

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Aspidinol

Description

Aspidinol belongs to the class of organic compounds known as alkyl-phenylketones. These are aromatic compounds containing a ketone substituted by one alkyl group, and a phenyl group. Aspidinol is found in Acorus calamus, Aspidium filix-mas, Athyrium filix-femina , Calyptranthes pallens, Dryopteris austriaca, Dryopteris crassirhizoma, Dryopteris dilatata, Dryopteris filix-mas , Dryopteris fragrans, Dryopteris hawaiiensis, Dryopteris villarii and Leucosidea sericea. Aspidinol is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 32 32  0  0  0  0  0  0  0  0999 V2000
    4.8448   -0.1633    1.0319 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9344    0.2815   -0.0873 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4983   -0.0233    0.3702 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5881    0.4159   -0.7360 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0895    0.9033   -1.7715 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1424    0.2855   -0.6256 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6895    0.6861   -1.6441 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3021    1.2326   -2.8328 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0868    0.5370   -1.4899 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5623   -0.0060   -0.3205 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9375   -0.1780   -0.1114 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8134    0.2158   -1.1200 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7393   -0.4078    0.6997 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3082   -0.9887    1.9428 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3784   -0.2615    0.5471 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4425   -0.6762    1.5967 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6617    0.4780    1.9200 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5705   -1.2312    1.2485 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8875   -0.0905    0.6549 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0325    1.3489   -0.3073 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1363   -0.3700   -0.9583 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3789   -1.1185    0.4508 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3711    0.5440    1.2899 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5766    1.4419   -3.1918 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7722    0.8417   -2.2715 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8512   -0.1764   -0.9126 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5014   -0.2310   -2.0857 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8844    1.3127   -1.2503 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0871   -2.0891    1.9070 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8770   -0.5368    2.8567 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4139   -0.9068    1.9118 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0498   -1.0698    2.4381 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  4  6  1  0
  6 15  2  0
 15 16  1  0
 15 13  1  0
 13 14  1  0
 13 10  2  0
 10 11  1  0
 11 12  1  0
 10  9  1  0
  9  7  2  0
  7  8  1  0
  7  6  1  0
  1 17  1  0
  1 18  1  0
  1 19  1  0
  2 20  1  0
  2 21  1  0
  3 22  1  0
  3 23  1  0
 16 32  1  0
 14 29  1  0
 14 30  1  0
 14 31  1  0
 12 26  1  0
 12 27  1  0
 12 28  1  0
  9 25  1  0
  8 24  1  0
M  END


  Mrv1533004241518412D          

 16 16  0  0  0  0            999 V2000
   -0.7145    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
  6 11  1  0  0  0  0
 11 12  1  0  0  0  0
  9 13  1  0  0  0  0
 13 14  1  0  0  0  0
  8 15  1  0  0  0  0
  7 16  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0051541

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCC(=O)C1=C(O)C(C)=C(OC)C=C1O

> <INCHI_IDENTIFIER>
InChI=1S/C12H16O4/c1-4-5-8(13)11-9(14)6-10(16-3)7(2)12(11)15/h6,14-15H,4-5H2,1-3H3

> <INCHI_KEY>
GJRJTYFSORWKBE-UHFFFAOYSA-N

> <FORMULA>
C12H16O4

> <MOLECULAR_WEIGHT>
224.256

> <EXACT_MASS>
224.104858995

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
32

> <JCHEM_AVERAGE_POLARIZABILITY>
23.645902019552352

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
1-(2,6-dihydroxy-4-methoxy-3-methylphenyl)butan-1-one

> <ALOGPS_LOGP>
2.14

> <JCHEM_LOGP>
3.7246173269999994

> <ALOGPS_LOGS>
-2.31

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
10.52529135056474

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.312456952322707

> <JCHEM_PKA_STRONGEST_BASIC>
-4.603712154191471

> <JCHEM_POLAR_SURFACE_AREA>
66.76

> <JCHEM_REFRACTIVITY>
61.15490000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.11e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
aspidinol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 24-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-APR-15         0                                  
HETATM    1  C   UNK     0      -1.334   6.930   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.000   6.160   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.000   4.620   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.334   3.850   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       2.667   4.620   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      -1.334   2.310   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0       1.334  -2.310   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       4.001   2.310   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7   11                                                  
CONECT    7    6    8   16                                                  
CONECT    8    7    9   15                                                  
CONECT    9    8   10   13                                                  
CONECT   10    9   11                                                       
CONECT   11   10    6   12                                                  
CONECT   12   11                                                            
CONECT   13    9   14                                                       
CONECT   14   13                                                            
CONECT   15    8                                                            
CONECT   16    7                                                            
MASTER        0    0    0    0    0    0    0    0   16    0   32    0
END

View in JSmol

Synonyms

Value	Source
Aspidinol-b	ChEMBL

Chemical Formula

C₁₂H₁₆O₄

Average Mass

224.2560 Da

Monoisotopic Mass

224.10486 Da

IUPAC Name

1-(2,6-dihydroxy-4-methoxy-3-methylphenyl)butan-1-one

Traditional Name

aspidinol

CAS Registry Number

Not Available

SMILES

CCCC(=O)C1=C(O)C(C)=C(OC)C=C1O

InChI Identifier

InChI=1S/C12H16O4/c1-4-5-8(13)11-9(14)6-10(16-3)7(2)12(11)15/h6,14-15H,4-5H2,1-3H3

InChI Key

GJRJTYFSORWKBE-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Acorus calamus	LOTUS Database	35616633
Aspidium filix-mas	Plant	KNApSAcK
Athyrium filix-femina	Plant	KNApSAcK
Calyptranthes pallens	LOTUS Database	35616633
Dryopteris austriaca	Plant	KNApSAcK
Dryopteris crassirhizoma	Plant	KNApSAcK
Dryopteris dilatata	LOTUS Database	35616633
Dryopteris filix-mas	Plant	KNApSAcK
Dryopteris fragrans	LOTUS Database	35616633
Dryopteris hawaiiensis	LOTUS Database	35616633
Dryopteris villarii	LOTUS Database	35616633
Leucosidea sericea	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as alkyl-phenylketones. These are aromatic compounds containing a ketone substituted by one alkyl group, and a phenyl group.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbonyl compounds

Direct Parent

Alkyl-phenylketones

Alternative Parents

Substituents

Alkyl-phenylketone
Butyrophenone
Methoxyphenol
Benzoyl
Phenoxy compound
O-cresol
P-cresol
Phenol ether
Resorcinol
Aryl alkyl ketone
Methoxybenzene
Anisole
Toluene
Phenol
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Alkyl aryl ether
Benzenoid
Monocyclic benzene moiety
Vinylogous acid
Ether
Hydrocarbon derivative
Organic oxide
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

carboxylic ester (CHEBI:2884 )
Phloroglucinols (C10673 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.14	ALOGPS
logP	3.72	ChemAxon
logS	-2.3	ALOGPS
pKa (Strongest Acidic)	9.31	ChemAxon
pKa (Strongest Basic)	-4.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	66.76 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	61.15 m³·mol⁻¹	ChemAxon
Polarizability	23.65 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00002691

Chemspider ID

Not Available

KEGG Compound ID

C10673

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

122841

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Aspidinol (NP0051541)

MOL for NP0051541 (Aspidinol)

3D MOL for NP0051541 (Aspidinol)

3D SDF for NP0051541 (Aspidinol)

3D-SDF for NP0051541 (Aspidinol)

PDB for NP0051541 (Aspidinol)

3D PDB for NP0051541 (Aspidinol)

SMILES for NP0051541 (Aspidinol)

INCHI for NP0051541 (Aspidinol)

Structure for NP0051541 (Aspidinol)

3D Structure for NP0051541 (Aspidinol)