NP-MRD: Showing NP-Card for 4'-Demethyldeoxypodophyllotoxin (NP0051501)

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Record Information

Version

2.0

Created at

2022-04-27 22:50:37 UTC

Updated at

2022-04-27 22:50:37 UTC

NP-MRD ID

NP0051501

Secondary Accession Numbers

None

Natural Product Identification

Common Name

4'-Demethyldeoxypodophyllotoxin

Description

4'-Demethyldeoxypodophyllotoxin, also known as a 80198, belongs to the class of organic compounds known as lignan lactones. These are lignans that contain a lactone moiety. They include 1-aryltetralin lactones, dibenzylbutyrolactone lignans, and podophyllotoxins, among others. 4'-Demethyldeoxypodophyllotoxin is a secondary metabolite. Secondary metabolites are metabolically or physiologically non-essential metabolites that may serve a role as defense or signalling molecules. In some cases they are simply molecules that arise from the incomplete metabolism of other secondary metabolites. 4'-Demethyldeoxypodophyllotoxin is found in Apis cerana, Bursera tonkinensis, Condea verticillata, Diphylleia grayi, Dysosma versipellis, Hyptis verticillata , Podophyllum peltatum, Polygala macradenia, Polygala paena, Sinopodophyllum emodi and Sinopodophyllum hexandrum. 4'-Demethyldeoxypodophyllotoxin was first documented in 2000 (PMID: 10680579). Based on a literature review a small amount of articles have been published on 4'-demethyldeoxypodophyllotoxin (PMID: 21676247) (PMID: 17256902) (PMID: 12873481) (PMID: 11800394).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282200502D          

 28 32  0  0  1  0            999 V2000
    3.3523    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668    0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7812    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7812    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5658    2.1904    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0508    1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5658    0.8555    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    1.1104    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9233    1.9354    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.6378    2.3479    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6378    3.1729    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    3.5854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    4.4104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    4.8229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    4.4104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    3.5854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668    4.8229    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668    5.6479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    5.6479    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2089    4.8229    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2089    5.6479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    2.1904    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8838    2.9750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6538    1.5229    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    0.8555    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  4  9  1  0  0  0  0
  2 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
  1 13  1  0  0  0  0
 13 14  1  6  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 14 19  1  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 17 22  1  0  0  0  0
 16 23  1  0  0  0  0
 23 24  1  0  0  0  0
 12 25  1  6  0  0  0
 25 26  2  0  0  0  0
 25 27  1  0  0  0  0
 27 28  1  0  0  0  0
 11 28  1  1  0  0  0
M  END

     RDKit          3D

 48 52  0  0  0  0  0  0  0  0999 V2000
    2.9593   -2.9729    1.2983 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5726   -1.6863    1.2575 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8950   -0.6399    0.6584 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6378   -0.7877    0.0922 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9493    0.2434   -0.5082 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3952    0.1052   -1.1158 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4741    0.3154   -0.1199 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3039    1.3250    0.8505 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2749    1.5644    1.7897 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4380    0.8022    1.7822 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5754   -0.1849    0.8132 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6193   -0.4375   -0.1295 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7985   -1.5051   -1.1433 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4267   -2.1146   -1.2768 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.2964   -3.2434   -2.2271 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0997   -3.1631   -2.5599 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5600   -1.8490   -2.3815 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7792   -1.5027   -2.5466 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5998   -1.0507   -1.9956 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.2724    1.2014    2.7978 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8154    2.4794    3.2187 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4290    2.4506    2.8542 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6145    1.4753   -0.5097 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8594    1.6611    0.0406 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5021    2.8917    0.0285 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8706    4.0020   -0.5652 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4999    0.5905    0.6282 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7599    0.7659    1.1885 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1521   -3.0397    2.0325 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7098   -3.7608    1.5521 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5798   -3.2676    0.2790 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2104   -1.7620    0.1392 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4885    1.0259   -1.7932 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3990    1.9032    0.8404 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4798   -0.8057    0.7771 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5613   -2.2463   -0.8593 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1214   -1.0264   -2.0795 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0299   -2.3649   -0.2997 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5172   -4.1952   -1.6862 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9204   -3.1757   -3.1289 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1387   -0.8010   -2.9489 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9631    2.5490    4.2973 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3665    3.2251    2.6268 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1175    2.3222   -0.9703 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1096    4.4294    0.1444 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6275    4.8135   -0.7598 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4256    3.7753   -1.5542 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2136    1.6662    1.1718 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5 23  2  0
 23 24  1  0
 24 25  1  0
 25 26  1  0
 24 27  2  0
 27 28  1  0
  5  6  1  0
  6 19  1  0
 19 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  2  0
 14 13  1  0
 13 12  1  0
 12  7  2  0
  7  8  1  0
  8  9  2  0
  9 22  1  0
 22 21  1  0
 21 20  1  0
 20 10  1  0
 10 11  2  0
 27  3  1  0
  7  6  1  0
 10  9  1  0
 17 19  1  0
 11 12  1  0
  1 29  1  0
  1 30  1  0
  1 31  1  0
  4 32  1  0
 23 44  1  0
 26 45  1  0
 26 46  1  0
 26 47  1  0
 28 48  1  0
  6 33  1  6
 19 41  1  6
 14 38  1  1
 15 39  1  0
 15 40  1  0
 13 36  1  0
 13 37  1  0
  8 34  1  0
 21 42  1  0
 21 43  1  0
 11 35  1  0
M  END


  Mrv1652304282200502D          

 28 32  0  0  1  0            999 V2000
    3.3523    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668    0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7812    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7812    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5658    2.1904    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0508    1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5658    0.8555    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    1.1104    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9233    1.9354    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.6378    2.3479    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6378    3.1729    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    3.5854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    4.4104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    4.8229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    4.4104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    3.5854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668    4.8229    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668    5.6479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    5.6479    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2089    4.8229    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2089    5.6479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    2.1904    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8838    2.9750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6538    1.5229    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    0.8555    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  4  9  1  0  0  0  0
  2 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
  1 13  1  0  0  0  0
 13 14  1  6  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 14 19  1  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 17 22  1  0  0  0  0
 16 23  1  0  0  0  0
 23 24  1  0  0  0  0
 12 25  1  6  0  0  0
 25 26  2  0  0  0  0
 25 27  1  0  0  0  0
 27 28  1  0  0  0  0
 11 28  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0051501

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC(=CC(OC)=C1O)[C@H]1[C@@H]2[C@H](COC2=O)CC2=C1C=C1OCOC1=C2

> <INCHI_IDENTIFIER>
InChI=1S/C21H20O7/c1-24-16-5-11(6-17(25-2)20(16)22)18-13-7-15-14(27-9-28-15)4-10(13)3-12-8-26-21(23)19(12)18/h4-7,12,18-19,22H,3,8-9H2,1-2H3/t12-,18+,19-/m0/s1

> <INCHI_KEY>
RFDMNXDDRXVJTM-RQUSPXKASA-N

> <FORMULA>
C21H20O7

> <MOLECULAR_WEIGHT>
384.384

> <EXACT_MASS>
384.120902984

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
48

> <JCHEM_AVERAGE_POLARIZABILITY>
38.91279326446316

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(10R,11R,15R)-10-(4-hydroxy-3,5-dimethoxyphenyl)-4,6,13-trioxatetracyclo[7.7.0.0^{3,7}.0^{11,15}]hexadeca-1(9),2,7-trien-12-one

> <ALOGPS_LOGP>
2.81

> <JCHEM_LOGP>
2.6661585533333327

> <ALOGPS_LOGS>
-3.94

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.330444562303912

> <JCHEM_PKA_STRONGEST_BASIC>
-4.365561941700972

> <JCHEM_POLAR_SURFACE_AREA>
83.45

> <JCHEM_REFRACTIVITY>
98.006

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.37e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(10R,11R,15R)-10-(4-hydroxy-3,5-dimethoxyphenyl)-4,6,13-trioxatetracyclo[7.7.0.0^{3,7}.0^{11,15}]hexadeca-1(9),2,7-trien-12-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       6.258   3.613   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.258   2.073   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.591   1.303   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       8.925   2.073   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       8.925   3.613   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       7.591   4.383   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      10.390   4.089   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0      11.295   2.843   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      10.390   1.597   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       4.924   1.303   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       3.590   2.073   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       3.590   3.613   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.924   4.383   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.924   5.923   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       3.590   6.693   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       3.590   8.233   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.924   9.003   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       6.258   8.233   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       6.258   6.693   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       7.591   9.003   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       7.591  10.543   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       4.924  10.543   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0       2.257   9.003   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       2.257  10.543   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       2.126   4.089   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       1.650   5.553   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0       1.220   2.843   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       2.126   1.597   0.000  0.00  0.00           C+0
CONECT    1    2    6   13                                                  
CONECT    2    1    3   10                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5    9                                                  
CONECT    5    4    6    7                                                  
CONECT    6    5    1                                                       
CONECT    7    5    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8    4                                                       
CONECT   10    2   11                                                       
CONECT   11   10   12   28                                                  
CONECT   12   11   13   25                                                  
CONECT   13   12    1   14                                                  
CONECT   14   13   15   19                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17   23                                                  
CONECT   17   16   18   22                                                  
CONECT   18   17   19   20                                                  
CONECT   19   18   14                                                       
CONECT   20   18   21                                                       
CONECT   21   20                                                            
CONECT   22   17                                                            
CONECT   23   16   24                                                       
CONECT   24   23                                                            
CONECT   25   12   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28                                                       
CONECT   28   27   11                                                       
MASTER        0    0    0    0    0    0    0    0   28    0   64    0
END

View in JSmol

Synonyms

Value	Source
(-)-4'-Demethyldeoxypodophyllotoxin	ChEBI
(-)-4'-Desmethyl-deoxypodophyllotoxin	ChEBI
4'-Desmethyldesoxypodophyllotoxin	ChEBI
a 80198	ChEBI
(5R,5AR,8ar)-5-(4-hydroxy-3,5-dimethoxyphenyl)-5,8,8a,9-tetrahydrofuro[3',4':6,7]naphtho[2,3-D][1,3]dioxol-6(5ah)-one	Kegg
4'-Demethyldesoxypodophyllotoxin	MeSH

Chemical Formula

C₂₁H₂₀O₇

Average Mass

384.3840 Da

Monoisotopic Mass

384.12090 Da

IUPAC Name

(10R,11R,15R)-10-(4-hydroxy-3,5-dimethoxyphenyl)-4,6,13-trioxatetracyclo[7.7.0.0^{3,7}.0^{11,15}]hexadeca-1(9),2,7-trien-12-one

Traditional Name

(10R,11R,15R)-10-(4-hydroxy-3,5-dimethoxyphenyl)-4,6,13-trioxatetracyclo[7.7.0.0^{3,7}.0^{11,15}]hexadeca-1(9),2,7-trien-12-one

CAS Registry Number

Not Available

SMILES

COC1=CC(=CC(OC)=C1O)[C@H]1[C@@H]2[C@H](COC2=O)CC2=C1C=C1OCOC1=C2

InChI Identifier

InChI=1S/C21H20O7/c1-24-16-5-11(6-17(25-2)20(16)22)18-13-7-15-14(27-9-28-15)4-10(13)3-12-8-26-21(23)19(12)18/h4-7,12,18-19,22H,3,8-9H2,1-2H3/t12-,18+,19-/m0/s1

InChI Key

RFDMNXDDRXVJTM-RQUSPXKASA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Apis cerana	LOTUS Database	35616633
Bursera tonkinensis	LOTUS Database	35616633
Condea verticillata	LOTUS Database	35616633
Diphylleia grayi	LOTUS Database	35616633
Dysosma versipellis	LOTUS Database	35616633
Hyptis verticillata	Plant	KNApSAcK
Podophyllum peltatum	LOTUS Database	35616633
Polygala macradenia	Plant	KNApSAcK
Polygala paena	Plant	KNApSAcK
Sinopodophyllum emodi	Plant	KNApSAcK
Sinopodophyllum hexandrum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as lignan lactones. These are lignans that contain a lactone moiety. They include 1-aryltetralin lactones, dibenzylbutyrolactone lignans, and podophyllotoxins, among others.

Kingdom

Organic compounds

Super Class

Lignans, neolignans and related compounds

Class

Lignan lactones

Sub Class

Not Available

Direct Parent

Lignan lactones

Alternative Parents

Substituents

Lignan lactone
1-aryltetralin lignan
Linear furanonaphthodioxole
Naphthofuran
Methoxyphenol
M-dimethoxybenzene
Dimethoxybenzene
Tetralin
Benzodioxole
Phenoxy compound
Anisole
Methoxybenzene
Phenol ether
Alkyl aryl ether
Phenol
Benzenoid
Gamma butyrolactone
Monocyclic benzene moiety
Tetrahydrofuran
Carboxylic acid ester
Lactone
Organoheterocyclic compound
Ether
Acetal
Carboxylic acid derivative
Oxacycle
Monocarboxylic acid or derivatives
Organic oxygen compound
Carbonyl group
Hydrocarbon derivative
Organic oxide
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

lactone (CHEBI:1729 )
lignan (CHEBI:1729 )
Lignans (C10552 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.81	ALOGPS
logP	2.67	ChemAxon
logS	-3.9	ALOGPS
pKa (Strongest Acidic)	9.33	ChemAxon
pKa (Strongest Basic)	-4.4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	83.45 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	98.01 m³·mol⁻¹	ChemAxon
Polarizability	38.91 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Chemspider ID

KEGG Compound ID

BioCyc ID

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

160705

PDB ID

Not Available

ChEBI ID

1729

Good Scents ID

Not Available

References

General References

Ng TB, Liu F, Wang ZT: Antioxidative activity of natural products from plants. Life Sci. 2000 Jan 14;66(8):709-23. doi: 10.1016/s0024-3205(99)00642-6. [PubMed:10680579 ]
Xu X, Gao X, Jin L, Bhadury PS, Yuan K, Hu D, Song B, Yang S: Antiproliferation and cell apoptosis inducing bioactivities of constituents from Dysosma versipellis in PC3 and Bcap-37 cell lines. Cell Div. 2011 Jun 15;6(1):14. doi: 10.1186/1747-1028-6-14. [PubMed:21676247 ]
Jiang RW, Zhou JR, Hon PM, Li SL, Zhou Y, Li LL, Ye WC, Xu HX, Shaw PC, But PP: Lignans from Dysosma versipellis with inhibitory effects on prostate cancer cell lines. J Nat Prod. 2007 Feb;70(2):283-6. doi: 10.1021/np060430o. Epub 2007 Jan 26. [PubMed:17256902 ]
You YJ, Kim Y, Nam NH, Ahn BZ: Antitumor activity of unsaturated fatty acid esters of 4'-demethyldeoxypodophyllotoxin. Bioorg Med Chem Lett. 2003 Aug 18;13(16):2629-32. doi: 10.1016/s0960-894x(03)00558-4. [PubMed:12873481 ]
Molog GA, Empt U, Kuhlmann S, van Uden W, Pras N, Alfermann AW, Petersen M: Deoxypodophyllotoxin 6-hydroxylase, a cytochrome P450 monooxygenase from cell cultures of Linum flavum involved in the biosynthesis of cytotoxic lignans. Planta. 2001 Dec;214(2):288-94. doi: 10.1007/s004250100617. [PubMed:11800394 ]

Showing NP-Card for 4'-Demethyldeoxypodophyllotoxin (NP0051501)

MOL for NP0051501 (4'-Demethyldeoxypodophyllotoxin)

3D MOL for NP0051501 (4'-Demethyldeoxypodophyllotoxin)

3D SDF for NP0051501 (4'-Demethyldeoxypodophyllotoxin)

3D-SDF for NP0051501 (4'-Demethyldeoxypodophyllotoxin)

PDB for NP0051501 (4'-Demethyldeoxypodophyllotoxin)

3D PDB for NP0051501 (4'-Demethyldeoxypodophyllotoxin)

SMILES for NP0051501 (4'-Demethyldeoxypodophyllotoxin)

INCHI for NP0051501 (4'-Demethyldeoxypodophyllotoxin)

Structure for NP0051501 (4'-Demethyldeoxypodophyllotoxin)

3D Structure for NP0051501 (4'-Demethyldeoxypodophyllotoxin)