Np mrd loader

Record Information
Version2.0
Created at2022-04-27 22:50:01 UTC
Updated at2022-04-27 22:50:01 UTC
NP-MRD IDNP0051486
Secondary Accession NumbersNone
Natural Product Identification
Common NamePseudobaptigenin
DescriptionPseudobaptigenin, also known as psi-baptigenin, belongs to the class of organic compounds known as isoflavones. These are polycyclic compounds containing a 2-isoflavene skeleton which bears a ketone group at the C4 carbon atom. Thus, pseudobaptigenin is considered to be a flavonoid lipid molecule. Pseudobaptigenin is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral. Outside of the human body, Pseudobaptigenin has been detected, but not quantified in, several different foods, such as sweet rowanberries, mandarin orange (clementine, tangerine), sweet cherries, strawberry guava, and burdocks. Pseudobaptigenin is found in Andira inermis, Baptisia tinctoria , Cicer arietinum, Cladrastis platycarpa, Dalbergia assamica, Dalbergia frutescens, Dalbergia latifolia , Dalbergia sericea, Dalbergia spruceana, Dalbergia stevensonii, Maackia amurensis, Maackia spp., Oxytropis falcata, Paraburkholderia phymatum, Pisum sativum , Pongamia pinnata, Pterocarpus erinaceus , Pterocarpus marsupium, Pterocarpus spp., Sophora alopecuroides, Sophora secundiflora , Spatholobus suberectus, Sophora japonica , Taxus fuana, Taxus yunnanensis, Trifolium pratense and Trifolium repens . Pseudobaptigenin was first documented in 2004 (PMID: 15283457). This could make pseudobaptigenin a potential biomarker for the consumption of these foods (PMID: 16413562) (PMID: 23265844).
Structure
Thumb
Synonyms
ValueSource
3-(1,3-Benzodioxol-5-yl)-7-hydroxy-4H-1-benzopyran-4-oneChEBI
7-Hydroxy-3',4'-(methylenedioxy)isoflavoneChEBI
Pseudobaptisin aglyconeChEBI
Psi-baptigeninChEBI
.psi.-baptigeninHMDB
3-(1,3-Benzodioxol-5-yl)-7-hydroxy-4H-1-benzopyran-4-one, 9ciHMDB
3-(1,3-Benzodioxol-5-yl)-7-hydroxy-4H-chromen-4-oneHMDB
7-Hydroxy-3', 4'-methylenedioxyisoflavoneHMDB
7-Hydroxy-3',4'-(methylenedioxy)-isoflavoneHMDB
Y-baptigeninHMDB
Chemical FormulaC16H10O5
Average Mass282.2476 Da
Monoisotopic Mass282.05282 Da
IUPAC Name3-(2H-1,3-benzodioxol-5-yl)-7-hydroxy-4H-chromen-4-one
Traditional Namepseudobaptigenin
CAS Registry NumberNot Available
SMILES
OC1=CC2=C(C=C1)C(=O)C(=CO2)C1=CC2=C(OCO2)C=C1
InChI Identifier
InChI=1S/C16H10O5/c17-10-2-3-11-14(6-10)19-7-12(16(11)18)9-1-4-13-15(5-9)21-8-20-13/h1-7,17H,8H2
InChI KeyKNJNBKINYHZUGC-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Andira inermisLOTUS Database
Baptisia tinctoriaPlant
Cicer arietinumLOTUS Database
Cladrastis platycarpaPlant
Dalbergia assamicaPlant
Dalbergia frutescensLOTUS Database
Dalbergia latifoliaPlant
Dalbergia sericeaPlant
Dalbergia spruceanaPlant
Dalbergia stevensoniiPlant
Maackia amurensisLOTUS Database
Maackia spp.Plant
Oxytropis falcataLOTUS Database
Paraburkholderia phymatum-
Pisum sativumPlant
Pongamia pinnataLOTUS Database
Pterocarpus erinaceusPlant
Pterocarpus marsupiumLOTUS Database
Pterocarpus spp.Plant
Sophora alopecuroidesLOTUS Database
Sophora secundifloraPlant
Spatholobus suberectusLOTUS Database
Styphnolobium japonicumPlant
Taxus fuanaPlant
Taxus wallichiana var. yunnanensisPlant
Trifolium pratensePlant
Trifolium repensPlant
Chemical Taxonomy
Description Belongs to the class of organic compounds known as isoflavones. These are polycyclic compounds containing a 2-isoflavene skeleton which bears a ketone group at the C4 carbon atom.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassIsoflavonoids
Sub ClassIsoflav-2-enes
Direct ParentIsoflavones
Alternative Parents
Substituents
  • Isoflavone
  • Hydroxyisoflavonoid
  • Chromone
  • Benzopyran
  • 1-benzopyran
  • Benzodioxole
  • Pyranone
  • 1-hydroxy-2-unsubstituted benzenoid
  • Benzenoid
  • Pyran
  • Heteroaromatic compound
  • Oxacycle
  • Organoheterocyclic compound
  • Acetal
  • Organooxygen compound
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.76ALOGPS
logP2.66ChemAxon
logS-3.5ALOGPS
pKa (Strongest Acidic)6.48ChemAxon
pKa (Strongest Basic)-4.6ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area64.99 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity73.49 m³·mol⁻¹ChemAxon
Polarizability28.21 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDHMDB0036616
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDFDB015532
KNApSAcK IDC00002565
Chemspider ID4445117
KEGG Compound IDC10522
BioCyc IDCPD-3628
BiGG IDNot Available
Wikipedia LinkPseudobaptigenin
METLIN IDNot Available
PubChem Compound5281805
PDB IDNot Available
ChEBI ID8602
Good Scents IDNot Available
References
General References
  1. Yoon JS, Sung SH, Park JH, Kim YC: Flavonoids from Spatholobus suberectus. Arch Pharm Res. 2004 Jun;27(6):589-92. doi: 10.1007/BF02980154. [PubMed:15283457 ]
  2. Delmonte P, Perry J, Rader JI: Determination of isoflavones in dietary supplements containing soy, Red Clover and kudzu: extraction followed by basic or acid hydrolysis. J Chromatogr A. 2006 Feb 24;1107(1-2):59-69. doi: 10.1016/j.chroma.2005.11.060. Epub 2006 Jan 18. [PubMed:16413562 ]
  3. Matin A, Doddareddy MR, Gavande N, Nammi S, Groundwater PW, Roubin RH, Hibbs DE: The discovery of novel isoflavone pan peroxisome proliferator-activated receptor agonists. Bioorg Med Chem. 2013 Feb 1;21(3):766-78. doi: 10.1016/j.bmc.2012.11.040. Epub 2012 Dec 3. [PubMed:23265844 ]