NP-MRD: Showing NP-Card for Ostruthin (NP0051455)

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Record Information

Version

2.0

Created at

2022-04-27 22:48:54 UTC

Updated at

2022-04-27 22:48:55 UTC

NP-MRD ID

NP0051455

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Ostruthin

Description

Ostruthin belongs to the class of organic compounds known as terpene lactones. These are prenol lipids containing a lactone ring. Ostruthin is found in Angelica decursiva, Eriostemon tomentellus, Flacourtia jangomas, Hansenia weberbaueriana, Luvunga eleutherandra , Luvunga sarmentosa (Bl.) Kurz., Pamburus missionis and Peucedanum ostruthium . Based on a literature review very few articles have been published on Ostruthin.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 44 45  0  0  0  0  0  0  0  0999 V2000
   -5.2421   -1.5038    1.8070 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8011   -0.2978    1.0753 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8014    0.6828    0.6140 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4914   -0.1062    0.8362 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0035    1.0693    0.1174 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3440    0.8619   -1.1884 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1464    0.0132   -1.2170 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2682   -1.4224   -0.8778 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0578    0.4877   -1.5896 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2333   -0.3686   -1.6092 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3570    0.0564   -0.7482 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5082   -0.7022   -0.8109 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6202   -0.3999   -0.0527 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7600   -1.1714   -0.1308 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8433   -0.8165    0.6557 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6896    0.2956    1.4635 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6837    0.6198    2.1841 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5734    0.9989    1.4986 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5199    0.7006    0.7709 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3730    1.4685    0.8430 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2590    1.1522    0.0729 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1023    1.9301    0.1491 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7375   -2.2209    1.1328 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3650   -1.9936    2.3230 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9791   -1.1885    2.5839 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8250    0.2602    0.7429 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6975    0.8661   -0.4792 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7133    1.6545    1.1715 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8045   -0.8475    1.2138 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3576    1.7020    0.7790 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8997    1.7311   -0.0784 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1675    1.8674   -1.6580 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1075    0.3620   -1.8612 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3379   -1.7360   -0.8636 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8326   -2.0772   -1.6893 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8400   -1.6020    0.1041 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0453    1.5456   -1.8687 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6509   -0.5452   -2.6230 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9466   -1.3852   -1.2273 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5941   -1.5829   -1.4669 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8148   -2.0406   -0.7924 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7720   -1.3867    0.6386 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3137    2.3373    1.5024 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0448    2.7319    0.7569 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  2  3
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  7  9  2  0
  9 10  1  0
 10 11  1  0
 11 21  2  0
 21 22  1  0
 21 20  1  0
 20 19  2  0
 19 18  1  0
 18 16  1  0
 16 17  2  0
 16 15  1  0
 15 14  2  0
 14 13  1  0
 13 12  2  0
 12 11  1  0
 13 19  1  0
  1 23  1  0
  1 24  1  0
  1 25  1  0
  3 26  1  0
  3 27  1  0
  3 28  1  0
  4 29  1  0
  5 30  1  0
  5 31  1  0
  6 32  1  0
  6 33  1  0
  8 34  1  0
  8 35  1  0
  8 36  1  0
  9 37  1  0
 10 38  1  0
 10 39  1  0
 22 44  1  0
 20 43  1  0
 15 42  1  0
 14 41  1  0
 12 40  1  0
M  END


  Mrv1652304282200482D          

 22 23  0  0  0  0            999 V2000
   -0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0013   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7158    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4302   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7158    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
  4 11  1  0  0  0  0
  2 12  1  0  0  0  0
  1 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 20 22  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0051455

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)=CCC\C(C)=C\CC1=C(O)C=C2OC(=O)C=CC2=C1

> <INCHI_IDENTIFIER>
InChI=1S/C19H22O3/c1-13(2)5-4-6-14(3)7-8-15-11-16-9-10-19(21)22-18(16)12-17(15)20/h5,7,9-12,20H,4,6,8H2,1-3H3/b14-7+

> <INCHI_KEY>
INBMTJJPUABOQJ-VGOFMYFVSA-N

> <FORMULA>
C19H22O3

> <MOLECULAR_WEIGHT>
298.382

> <EXACT_MASS>
298.156894568

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
44

> <JCHEM_AVERAGE_POLARIZABILITY>
33.742093059798876

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
6-[(2E)-3,7-dimethylocta-2,6-dien-1-yl]-7-hydroxy-2H-chromen-2-one

> <ALOGPS_LOGP>
4.99

> <JCHEM_LOGP>
4.868075568

> <ALOGPS_LOGS>
-4.96

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.639982374935119

> <JCHEM_PKA_STRONGEST_BASIC>
-6.940648093899691

> <JCHEM_POLAR_SURFACE_AREA>
46.53

> <JCHEM_REFRACTIVITY>
91.5749

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.28e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
ostruthin

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0      -1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.000  -3.080   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.000  -0.000   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       5.335  -3.080   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0       2.667  -3.080   0.000  0.00  0.00           O+0
HETATM   12  O   UNK     0      -2.667  -3.080   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      -2.667   0.000   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -5.335   0.000   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -5.335   1.540   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -8.002   0.000   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -9.336  -0.770   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0     -10.669   0.000   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0     -12.003  -0.770   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0     -10.669   1.540   0.000  0.00  0.00           C+0
CONECT    1    2    6   13                                                  
CONECT    2    1    3   12                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   11                                                  
CONECT    5    4    6    7                                                  
CONECT    6    5    1                                                       
CONECT    7    5    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9    4                                                       
CONECT   12    2                                                            
CONECT   13    1   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20                                                            
MASTER        0    0    0    0    0    0    0    0   22    0   46    0
END

View in JSmol

Synonyms

Value	Source
6-(3,7-Dimethyl-2,6-octadienyl)-7-hydroxycoumarin	MeSH
6-Geranyl-7-hydroxycoumarin	MeSH

Chemical Formula

C₁₉H₂₂O₃

Average Mass

298.3820 Da

Monoisotopic Mass

298.15689 Da

IUPAC Name

6-[(2E)-3,7-dimethylocta-2,6-dien-1-yl]-7-hydroxy-2H-chromen-2-one

Traditional Name

ostruthin

CAS Registry Number

Not Available

SMILES

CC(C)=CCC\C(C)=C\CC1=C(O)C=C2OC(=O)C=CC2=C1

InChI Identifier

InChI=1S/C19H22O3/c1-13(2)5-4-6-14(3)7-8-15-11-16-9-10-19(21)22-18(16)12-17(15)20/h5,7,9-12,20H,4,6,8H2,1-3H3/b14-7+

InChI Key

INBMTJJPUABOQJ-VGOFMYFVSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Angelica decursiva	LOTUS Database	35616633
Eriostemon tomentellus	Plant	KNApSAcK
Flacourtia jangomas	LOTUS Database	35616633
Hansenia weberbaueriana	LOTUS Database	35616633
Luvunga eleutherandra	Plant	KNApSAcK
Luvunga sarmentosa (Bl.) Kurz.	Plant	KNApSAcK
Pamburus missionis	LOTUS Database	35616633
Peucedanum ostruthium	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as terpene lactones. These are prenol lipids containing a lactone ring.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Terpene lactones

Alternative Parents

Substituents

Terpene lactone
7-hydroxycoumarin
Hydroxycoumarin
Coumarin
Aromatic monoterpenoid
Benzopyran
Bicyclic monoterpenoid
Monoterpenoid
1-benzopyran
1-hydroxy-2-unsubstituted benzenoid
Pyranone
Benzenoid
Pyran
Heteroaromatic compound
Lactone
Organoheterocyclic compound
Oxacycle
Organic oxygen compound
Hydrocarbon derivative
Organic oxide
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

terpene lactone (CHEBI:69833 )
coumarins (C09281 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.99	ALOGPS
logP	4.87	ChemAxon
logS	-5	ALOGPS
pKa (Strongest Acidic)	7.64	ChemAxon
pKa (Strongest Basic)	-6.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	46.53 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	91.57 m³·mol⁻¹	ChemAxon
Polarizability	33.74 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00002489

Chemspider ID

4444768

KEGG Compound ID

C09281

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

5281420

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

rw1068721

References

General References

Not Available

Showing NP-Card for Ostruthin (NP0051455)

MOL for NP0051455 (Ostruthin)

3D MOL for NP0051455 (Ostruthin)

3D SDF for NP0051455 (Ostruthin)

3D-SDF for NP0051455 (Ostruthin)

PDB for NP0051455 (Ostruthin)

3D PDB for NP0051455 (Ostruthin)

SMILES for NP0051455 (Ostruthin)

INCHI for NP0051455 (Ostruthin)

Structure for NP0051455 (Ostruthin)

3D Structure for NP0051455 (Ostruthin)