NP-MRD: Showing NP-Card for Cyclovirobuxine C (NP0051295)

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Record Information

Version

2.0

Created at

2022-04-27 22:40:32 UTC

Updated at

2022-04-27 22:40:32 UTC

NP-MRD ID

NP0051295

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Cyclovirobuxine C

Description

Cyclovirobuxine C belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units. Cyclovirobuxine C is found in Buxus argentea, Buxus malayana, Buxus microphylla, Buxus sempervirens and Buxus wallichiana . Based on a literature review very few articles have been published on Cyclovirobuxine C.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282200402D          

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M  END

     RDKit          3D

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M  END


  Mrv1652304282200402D          

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M  END
> <DATABASE_ID>
NP0051295

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CN[C@H]1CC[C@]23C[C@]22CC[C@]4(C)[C@@H]([C@H](C)N(C)C)[C@H](O)C[C@@]4(C)[C@@H]2CC[C@H]3C1(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C27H48N2O/c1-17(29(7)8)22-18(30)15-25(5)20-10-9-19-23(2,3)21(28-6)11-12-26(19)16-27(20,26)14-13-24(22,25)4/h17-22,28,30H,9-16H2,1-8H3/t17-,18+,19-,20-,21-,22-,24+,25-,26+,27-/m0/s1

> <INCHI_KEY>
IDOHCEDWHOEHNL-ZUDQDPCPSA-N

> <FORMULA>
C27H48N2O

> <MOLECULAR_WEIGHT>
416.694

> <EXACT_MASS>
416.376664174

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
78

> <JCHEM_AVERAGE_POLARIZABILITY>
52.12344955402864

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,3R,6S,8R,11S,12S,14R,15S,16R)-15-[(1S)-1-(dimethylamino)ethyl]-7,7,12,16-tetramethyl-6-(methylamino)pentacyclo[9.7.0.0^{1,3}.0^{3,8}.0^{12,16}]octadecan-14-ol

> <ALOGPS_LOGP>
4.16

> <JCHEM_LOGP>
3.903493812333333

> <ALOGPS_LOGS>
-5.51

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
2

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.865508585371643

> <JCHEM_PKA_STRONGEST_BASIC>
10.795551540225869

> <JCHEM_POLAR_SURFACE_AREA>
35.5

> <JCHEM_REFRACTIVITY>
125.08109999999996

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.30e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,3R,6S,8R,11S,12S,14R,15S,16R)-15-[(1S)-1-(dimethylamino)ethyl]-7,7,12,16-tetramethyl-6-(methylamino)pentacyclo[9.7.0.0^{1,3}.0^{3,8}.0^{12,16}]octadecan-14-ol

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       7.556   2.761   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.033   1.312   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       8.026   0.135   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       9.542   0.406   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      10.065   1.854   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       9.072   3.032   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      11.604   1.804   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      12.032   0.325   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      10.757  -0.539   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      13.480  -0.198   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      12.549   3.020   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      11.969   4.447   0.000  0.00  0.00           C+0
HETATM   13  N   UNK     0      14.075   2.809   0.000  0.00  0.00           N+0
HETATM   14  C   UNK     0      15.020   4.025   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      14.655   1.383   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      10.737   3.240   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       9.173  -1.089   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       7.502  -1.314   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.986  -1.585   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       4.994  -0.407   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       5.517   1.041   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.524   2.218   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       3.008   1.947   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       2.485   0.499   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       3.478  -0.678   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       2.336  -1.712   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       3.696  -2.203   0.000  0.00  0.00           C+0
HETATM   28  N   UNK     0       0.969   0.228   0.000  0.00  0.00           N+0
HETATM   29  C   UNK     0       0.446  -1.221   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       6.040   2.489   0.000  0.00  0.00           C+0
CONECT    1    2    6                                                       
CONECT    2    1    3   21   30                                             
CONECT    3    2    4   18                                                  
CONECT    4    3    5    9   17                                             
CONECT    5    4    6    7   16                                             
CONECT    6    5    1                                                       
CONECT    7    5    8   11                                                  
CONECT    8    7    9   10                                                  
CONECT    9    8    4                                                       
CONECT   10    8                                                            
CONECT   11    7   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13                                                            
CONECT   16    5                                                            
CONECT   17    4                                                            
CONECT   18    3   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   25                                                  
CONECT   21   20    2   22   30                                             
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25   28                                                  
CONECT   25   24   20   26   27                                             
CONECT   26   25                                                            
CONECT   27   25                                                            
CONECT   28   24   29                                                       
CONECT   29   28                                                            
CONECT   30   21    2                                                       
MASTER        0    0    0    0    0    0    0    0   30    0   68    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₇H₄₈N₂O

Average Mass

416.6940 Da

Monoisotopic Mass

416.37666 Da

IUPAC Name

(1S,3R,6S,8R,11S,12S,14R,15S,16R)-15-[(1S)-1-(dimethylamino)ethyl]-7,7,12,16-tetramethyl-6-(methylamino)pentacyclo[9.7.0.0^{1,3}.0^{3,8}.0^{12,16}]octadecan-14-ol

Traditional Name

(1S,3R,6S,8R,11S,12S,14R,15S,16R)-15-[(1S)-1-(dimethylamino)ethyl]-7,7,12,16-tetramethyl-6-(methylamino)pentacyclo[9.7.0.0^{1,3}.0^{3,8}.0^{12,16}]octadecan-14-ol

CAS Registry Number

Not Available

SMILES

CN[C@H]1CC[C@]23C[C@]22CC[C@]4(C)[C@@H]([C@H](C)N(C)C)[C@H](O)C[C@@]4(C)[C@@H]2CC[C@H]3C1(C)C

InChI Identifier

InChI=1S/C27H48N2O/c1-17(29(7)8)22-18(30)15-25(5)20-10-9-19-23(2,3)21(28-6)11-12-26(19)16-27(20,26)14-13-24(22,25)4/h17-22,28,30H,9-16H2,1-8H3/t17-,18+,19-,20-,21-,22-,24+,25-,26+,27-/m0/s1

InChI Key

IDOHCEDWHOEHNL-ZUDQDPCPSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Buxus argentea	Plant	KNApSAcK
Buxus malayana	Plant	KNApSAcK
Buxus microphylla	Plant	KNApSAcK
Buxus sempervirens	Plant	KNApSAcK
Buxus wallichiana	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Triterpenoids

Direct Parent

Triterpenoids

Alternative Parents

Substituents

Triterpenoid
22-azasteroid
9(beta),19-cyclo-4,4-14(alpha)-trimethyl-5(alpha)-pregnane-skeleton
Steroidal alkaloid
Hydroxysteroid
16-hydroxysteroid
16-alpha-hydroxysteroid
Azasteroid
Steroid
Alkaloid or derivatives
Cyclic alcohol
Tertiary aliphatic amine
Secondary alcohol
Tertiary amine
Secondary amine
Secondary aliphatic amine
Organooxygen compound
Organonitrogen compound
Hydrocarbon derivative
Alcohol
Organopnictogen compound
Organic oxygen compound
Organic nitrogen compound
Amine
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

steroid alkaloid (CHEBI:4032 )
Steroidal alkaloids (C10801 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.16	ALOGPS
logP	3.9	ChemAxon
logS	-5.5	ALOGPS
pKa (Strongest Acidic)	14.87	ChemAxon
pKa (Strongest Basic)	10.8	ChemAxon
Physiological Charge	2	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	35.5 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	125.08 m³·mol⁻¹	ChemAxon
Polarizability	52.12 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00002247

Chemspider ID

391276

KEGG Compound ID

C10801

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

442973

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Cyclovirobuxine C (NP0051295)

MOL for NP0051295 (Cyclovirobuxine C)

3D MOL for NP0051295 (Cyclovirobuxine C)

3D SDF for NP0051295 (Cyclovirobuxine C)

3D-SDF for NP0051295 (Cyclovirobuxine C)

PDB for NP0051295 (Cyclovirobuxine C)

3D PDB for NP0051295 (Cyclovirobuxine C)

SMILES for NP0051295 (Cyclovirobuxine C)

INCHI for NP0051295 (Cyclovirobuxine C)

Structure for NP0051295 (Cyclovirobuxine C)

3D Structure for NP0051295 (Cyclovirobuxine C)