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Record Information
Version2.0
Created at2022-04-27 22:29:48 UTC
Updated at2022-04-27 22:29:48 UTC
NP-MRD IDNP0051051
Secondary Accession NumbersNone
Natural Product Identification
Common NameLycobergine
DescriptionLycoflexine belongs to the class of organic compounds known as azaspirodecane derivatives. These are organic compounds containing a spirodecane moiety with at least one nitrogen atom. Lycobergine is found in Austrolycopodium fastigiatum, Lycopodium serratum, Lycopodium inundatum, Lycopodium carolinianum, Lycopodium clavatum var. borbonicum , Lycopodium clavatum var. inflexum , Lycopodium deuterodensum, Lycopodium fastigiatum, Lycopodium japonicum, Lycopodium serratum var. serratum f. intermedium, Lycopodium serratum var. serratum f. serratum, Lycopodium phlegmaria and Phlegmariurus varius. Lycobergine was first documented in 2011 (PMID: 21473623). Based on a literature review a small amount of articles have been published on Lycoflexine (PMID: 23650145) (PMID: 26287979) (PMID: 24295384) (PMID: 22519642).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC17H25NO2
Average Mass275.3920 Da
Monoisotopic Mass275.18853 Da
IUPAC Name(1S,4S,6R,9S)-6-methyl-13-azatetracyclo[11.3.1.0^{1,9}.0^{4,9}]heptadecane-2,8-dione
Traditional Name(1S,4S,6R,9S)-6-methyl-13-azatetracyclo[11.3.1.0^{1,9}.0^{4,9}]heptadecane-2,8-dione
CAS Registry NumberNot Available
SMILES
C[C@@H]1C[C@H]2CC(=O)[C@]34CCCN(C3)CCC[C@]24C(=O)C1
InChI Identifier
InChI=1S/C17H25NO2/c1-12-8-13-10-14(19)16-4-2-6-18(11-16)7-3-5-17(13,16)15(20)9-12/h12-13H,2-11H2,1H3/t12-,13+,16+,17-/m1/s1
InChI KeySJIMDGIDDDGXLI-OSRSDYAFSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Austrolycopodium fastigiatumLOTUS Database
Huperzia serrataPlant
Lycopodiella inundataPlant
Lycopodium carolinianumPlant
Lycopodium clavatum var. borbonicumPlant
Lycopodium clavatum var. inflexumPlant
Lycopodium deuterodensumPlant
Lycopodium fastigiatumPlant
Lycopodium japonicumLOTUS Database
Lycopodium serratum var. serratum f. intermediumPlant
Lycopodium serratum var. serratum f. serratumPlant
Phlegmariurus phlegmariaPlant
Phlegmariurus variusLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as azaspirodecane derivatives. These are organic compounds containing a spirodecane moiety with at least one nitrogen atom.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassAzaspirodecane derivatives
Sub ClassNot Available
Direct ParentAzaspirodecane derivatives
Alternative Parents
Substituents
  • Azaspirodecane
  • Azepane
  • Piperidine
  • Ketone
  • Tertiary amine
  • Tertiary aliphatic amine
  • Azacycle
  • Amine
  • Hydrocarbon derivative
  • Organic oxide
  • Organooxygen compound
  • Organonitrogen compound
  • Organopnictogen compound
  • Carbonyl group
  • Organic oxygen compound
  • Organic nitrogen compound
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.2ALOGPS
logP2.43ChemAxon
logS-2ALOGPS
pKa (Strongest Acidic)18.74ChemAxon
pKa (Strongest Basic)8.6ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area37.38 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity78.18 m³·mol⁻¹ChemAxon
Polarizability30.91 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00001946
Chemspider ID390917
KEGG Compound IDC09879
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound442486
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Itoh N, Iwata T, Sugihara H, Inagaki F, Mukai C: Total syntheses of (+/-)-fawcettimine, (+/-)-fawcettidine, (+/-)-lycoflexine, and (+/-)-lycoposerramine-Q. Chemistry. 2013 Jun 24;19(26):8665-72. doi: 10.1002/chem.201300364. Epub 2013 May 6. [PubMed:23650145 ]
  2. Liu YC, Fan M, Jiang WW, Liu F, Wu XD, He J, Cheng X, Peng LY, Su J, Zhang ZJ, Zhao QS: Four new fawcettimine-related alkaloids from Phlegmariurus squarrosus. J Asian Nat Prod Res. 2015;17(10):967-75. doi: 10.1080/10286020.2015.1043281. Epub 2015 Aug 19. [PubMed:26287979 ]
  3. Xu K, Cheng B, Li Y, Xu T, Yu C, Zhang J, Ma Z, Zhai H: Stereocontrolled total syntheses of (+/-)-fawcettimine, (+/-)-lycoflexine, and (+/-)-lycoflexine N-oxide. Org Lett. 2014 Jan 3;16(1):196-9. doi: 10.1021/ol403185g. Epub 2013 Dec 2. [PubMed:24295384 ]
  4. Pan G, Williams RM: Unified total syntheses of fawcettimine class alkaloids: fawcettimine, fawcettidine, lycoflexine, and lycoposerramine B. J Org Chem. 2012 May 18;77(10):4801-11. doi: 10.1021/jo3006045. Epub 2012 May 7. [PubMed:22519642 ]
  5. Yang YR, Shen L, Huang JZ, Xu T, Wei K: Application of the Helquist annulation in Lycopodium alkaloid synthesis: unified total syntheses of (-)-8-deoxyserratinine, (+)-fawcettimine, and (+)-lycoflexine. J Org Chem. 2011 May 20;76(10):3684-90. doi: 10.1021/jo1023188. Epub 2011 Apr 7. [PubMed:21473623 ]