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Record Information
Version2.0
Created at2022-04-27 22:29:43 UTC
Updated at2022-04-27 22:29:43 UTC
NP-MRD IDNP0051049
Secondary Accession NumbersNone
Natural Product Identification
Common Name(-)-Lycodine
DescriptionLycodine belongs to the class of organic compounds known as phenanthrolines. These are aromatic polycyclic compounds containing the phenanthroline skeleton, which is a derivative of phenanthrene, and consists of two pyridine rings non-linearly joined by a benzene ring. (-)-Lycodine is found in Austrolycopodium fastigiatum, Austrolycopodium magellanicum, Dendrolycopodium obscurum, Diphasiastrum tristachyum, Huperzia lucidula, Huperzia serrata , Lycopodiastrum casuarinoides, Lycopodium australianum, Lycopodium clavatum var. borbonicum , Lycopodium deuterodensum, Lycopodium fastigiatum, Lycopodium fawcettii, Lycopodium flabelliforme, Lycopodium lucidulum, Lycopodium magellanicum, Lycopodium obscurum, Lycopodium serratum var. serratum f. intermedium, Lycopodium serratum var. serratum f. serratum, Lycopodium serratum var. thunbergii, Lycopodium tristachyum, Palhinhaea cernua, Lycopodium phlegmaria and Lycopodium annotinum. (-)-Lycodine was first documented in 2019 (PMID: 31676395). Based on a literature review a small amount of articles have been published on Lycodine (PMID: 32009077) (PMID: 34570487) (PMID: 34368579) (PMID: 33729783).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC16H22N2
Average Mass242.3660 Da
Monoisotopic Mass242.17830 Da
IUPAC Name(1R,9S,10R,16R)-16-methyl-6,14-diazatetracyclo[7.5.3.0^{1,10}.0^{2,7}]heptadeca-2,4,6-triene
Traditional Name(1R,9S,10R,16R)-16-methyl-6,14-diazatetracyclo[7.5.3.0^{1,10}.0^{2,7}]heptadeca-2,4,6-triene
CAS Registry NumberNot Available
SMILES
C[C@@H]1C[C@H]2CC3=NC=CC=C3[C@]3(C1)NCCC[C@H]23
InChI Identifier
InChI=1S/C16H22N2/c1-11-8-12-9-15-14(5-2-6-17-15)16(10-11)13(12)4-3-7-18-16/h2,5-6,11-13,18H,3-4,7-10H2,1H3/t11-,12+,13-,16-/m1/s1
InChI KeyJJPMUZRSJKMFRK-OQMKEHIESA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Austrolycopodium fastigiatumLOTUS Database
Austrolycopodium magellanicumLOTUS Database
Dendrolycopodium obscurumLOTUS Database
Diphasiastrum tristachyumLOTUS Database
Huperzia lucidulaLOTUS Database
Huperzia serrataPlant
Lycopodiastrum casuarinoides-
Lycopodium australianumPlant
Lycopodium clavatum var. borbonicumPlant
Lycopodium deuterodensumPlant
Lycopodium fastigiatumPlant
Lycopodium fawcettiiPlant
Lycopodium flabelliformePlant
Lycopodium lucidulumPlant
Lycopodium magellanicumPlant
Lycopodium obscurumPlant
Lycopodium serratum var. serratum f. intermediumPlant
Lycopodium serratum var. serratum f. serratumPlant
Lycopodium serratum var. thunbergiiPlant
Lycopodium tristachyumPlant
Palhinhaea cernua-
Phlegmariurus phlegmariaPlant
Spinulum annotinumPlant
Chemical Taxonomy
Description Belongs to the class of organic compounds known as phenanthrolines. These are aromatic polycyclic compounds containing the phenanthroline skeleton, which is a derivative of phenanthrene, and consists of two pyridine rings non-linearly joined by a benzene ring.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassPhenanthrolines
Sub ClassNot Available
Direct ParentPhenanthrolines
Alternative Parents
Substituents
  • 1,7-phenanthroline
  • Quinolidine
  • Aralkylamine
  • Pyridine
  • Piperidine
  • Heteroaromatic compound
  • Azacycle
  • Secondary amine
  • Secondary aliphatic amine
  • Organic nitrogen compound
  • Organopnictogen compound
  • Hydrocarbon derivative
  • Organonitrogen compound
  • Amine
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.73ALOGPS
logP2.43ChemAxon
logS-4ALOGPS
pKa (Strongest Basic)9.42ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count2ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area24.92 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity72.71 m³·mol⁻¹ChemAxon
Polarizability28.16 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00001944
Chemspider ID16735882
KEGG Compound IDC09876
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound5462443
PDB IDNot Available
ChEBI ID6591
Good Scents IDNot Available
References
General References
  1. Takayama H: Total Syntheses of Lycopodium and Monoterpenoid Indole Alkaloids Based on Biosynthesis-Inspired Strategies. Chem Pharm Bull (Tokyo). 2020;68(2):103-116. doi: 10.1248/cpb.c19-00872. [PubMed:32009077 ]
  2. Ma D, Martin BS, Gallagher KS, Saito T, Dai M: One-Carbon Insertion and Polarity Inversion Enabled a Pyrrole Strategy to the Total Syntheses of Pyridine-Containing Lycopodium Alkaloids: Complanadine A and Lycodine. J Am Chem Soc. 2021 Oct 13;143(40):16383-16387. doi: 10.1021/jacs.1c08626. Epub 2021 Sep 27. [PubMed:34570487 ]
  3. Anukanon S, Pongpamorn P, Tiyabhorn W, Chatwichien J, Niwetmarin W, Sessions RB, Ruchirawat S, Thasana N: In Silico-Guided Rational Drug Design and Semi-synthesis of C(2)-Functionalized Huperzine A Derivatives as Acetylcholinesterase Inhibitors. ACS Omega. 2021 Jul 26;6(30):19924-19939. doi: 10.1021/acsomega.1c02875. eCollection 2021 Aug 3. [PubMed:34368579 ]
  4. Haley HMS, Payer SE, Papidocha SM, Clemens S, Nyenhuis J, Sarpong R: Bioinspired Diversification Approach Toward the Total Synthesis of Lycodine-Type Alkaloids. J Am Chem Soc. 2021 Mar 31;143(12):4732-4740. doi: 10.1021/jacs.1c00457. Epub 2021 Mar 17. [PubMed:33729783 ]
  5. Feng Z, Chen S, Wang W, Feng L, Dong Y, Zou Y, Ke C, Tang C, Yao S, Zhang H, Gan L, Ye Y, Lin L: Lycodine-type alkaloids from Lycopodiastrum casuarinoides and their acetylcholinesterase inhibitory activity. Fitoterapia. 2019 Nov;139:104378. doi: 10.1016/j.fitote.2019.104378. Epub 2019 Oct 30. [PubMed:31676395 ]