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Record Information
Version2.0
Created at2022-04-27 22:17:54 UTC
Updated at2024-09-03 04:17:22 UTC
NP-MRD IDNP0050869
Natural Product DOIhttps://doi.org/10.57994/1011
Secondary Accession NumbersNone
Natural Product Identification
Common NameEvodiamine
DescriptionEvodiamine belongs to the class of organic compounds known as beta carbolines. Beta carbolines are compounds containing a 9H-pyrido[3,4-b]indole moiety. Evodiamine is found in Araliopsis tabouensis, Corydalis yanhusuo , Tetradium ruticarpum, Evodia rutaecarpa , Fagara rhetza (Roxb.) DC , Phellodendron amurense and Phellodendron chinense. Evodiamine was first documented in 2022 (PMID: 35463684). Based on a literature review a small amount of articles have been published on Evodiamine (PMID: 35435667) (PMID: 35388733) (PMID: 35385268) (PMID: 35379148).
Structure
Thumb
Synonyms
ValueSource
Evodiamine, (S)-isomerMeSH
IsoevodiamineMeSH
Chemical FormulaC19H17N3O
Average Mass303.3650 Da
Monoisotopic Mass303.13716 Da
IUPAC Name(1S)-21-methyl-3,13,21-triazapentacyclo[11.8.0.0^{2,10}.0^{4,9}.0^{15,20}]henicosa-2(10),4,6,8,15(20),16,18-heptaen-14-one
Traditional Name(1S)-21-methyl-3,13,21-triazapentacyclo[11.8.0.0^{2,10}.0^{4,9}.0^{15,20}]henicosa-2(10),4,6,8,15(20),16,18-heptaen-14-one
CAS Registry NumberNot Available
SMILES
CN1[C@H]2N(CCC3=C2NC2=CC=CC=C32)C(=O)C2=C1C=CC=C2
InChI Identifier
InChI=1S/C19H17N3O/c1-21-16-9-5-3-7-14(16)19(23)22-11-10-13-12-6-2-4-8-15(12)20-17(13)18(21)22/h2-9,18,20H,10-11H2,1H3/t18-/m0/s1
InChI KeyTXDUTHBFYKGSAH-SFHVURJKSA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
HSQC NMR[1H, 13C] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)bgnzk@missouri.eduMU Metabolomics Center, University of Missouri, Columbia. MO, USADr. Bharat Goel2023-10-02View Spectrum
HMBC NMR[1H, 13C] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)bgnzk@missouri.eduMU Metabolomics Center, University of Missouri, Columbia. MO, USADr. Bharat Goel2023-10-02View Spectrum
COSY NMR[1H, 1H] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)bgnzk@missouri.eduMU Metabolomics Center, University of Missouri, Columbia. MO, USADr. Bharat Goel2023-10-02View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, CDCl3, experimental)bgnzk@missouri.eduMU Metabolomics Center, University of Missouri, Columbia. MO, USADr. Bharat Goel2023-10-02View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, CDCl3, experimental)bgnzk@missouri.eduMU Metabolomics Center, University of Missouri, Columbia. MO, USADr. Bharat Goel2023-10-02View Spectrum
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Araliopsis tabouensisPlant
Corydalis yanhusuoPlant
Euodia rutaecarpaLOTUS Database
Evodia rutaecarpaPlant
Fagara rhetza (Roxb.) DCPlant
Phellodendron amurensePlant
Phellodendron chinenseLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as beta carbolines. Beta carbolines are compounds containing a 9H-pyrido[3,4-b]indole moiety.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassIndoles and derivatives
Sub ClassPyridoindoles
Direct ParentBeta carbolines
Alternative Parents
Substituents
  • Beta-carboline
  • Diazanaphthalene
  • Quinazoline
  • 3-alkylindole
  • Indole
  • Dialkylarylamine
  • Benzenoid
  • Pyrrole
  • Tertiary carboxylic acid amide
  • Vinylogous amide
  • Heteroaromatic compound
  • Lactam
  • Carboxamide group
  • Carboxylic acid derivative
  • Azacycle
  • Organic oxide
  • Organic nitrogen compound
  • Organopnictogen compound
  • Organooxygen compound
  • Organonitrogen compound
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.07ALOGPS
logP3.32ChemAxon
logS-3.3ALOGPS
pKa (Strongest Acidic)14.91ChemAxon
pKa (Strongest Basic)-1.7ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count2ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area39.34 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity91.01 m³·mol⁻¹ChemAxon
Polarizability33.88 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00001727
Chemspider ID390624
KEGG Compound IDC09187
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkEvodiamine
METLIN IDNot Available
PubChem Compound442088
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDrw1665391
References
General References
  1. Xu R, Yang X, Tao Y, Luo W, Xiong Y, He L, Zhou F, He Y: Analysis of the Molecular Mechanism of Evodia rutaecarpa Fruit in the Treatment of Nasopharyngeal Carcinoma Using Network Pharmacology and Molecular Docking. J Healthc Eng. 2022 Apr 13;2022:6277139. doi: 10.1155/2022/6277139. eCollection 2022. [PubMed:35463684 ]
  2. Liu J, Shi Y, Tian Z, Li F, Hao Z, Wen W, Zhang L, Wang Y, Li Y, Fan Z: Bioactivity-Guided Synthesis Accelerates the Discovery of Evodiamine Derivatives as Potent Insecticide Candidates. J Agric Food Chem. 2022 Apr 27;70(16):5197-5206. doi: 10.1021/acs.jafc.1c08297. Epub 2022 Apr 18. [PubMed:35435667 ]
  3. Li Y, Wang Y, Wang X, Jin L, Yang L, Zhu J, Wang H, Zheng F, Cui H, Li X, Jia Y: Evodiamine suppresses the progression of non-small cell lung carcinoma via endoplasmic reticulum stress-mediated apoptosis pathway in vivo and in vitro. Int J Immunopathol Pharmacol. 2022 Jan-Dec;36:3946320221086079. doi: 10.1177/03946320221086079. [PubMed:35388733 ]
  4. Liu Y, Wei X, Chen J, Yu YL, Wang JH, Qiu H: Acetylcholinesterase Activity Monitoring and Natural Anti-neurological Disease Drug Screening via Rational Design of Deep Eutectic Solvents and CeO2-Co(OH)2 Nanosheets. Anal Chem. 2022 Apr 19;94(15):5970-5979. doi: 10.1021/acs.analchem.2c00428. Epub 2022 Apr 6. [PubMed:35385268 ]
  5. Li D, Li Y, Jiang X, Liu W, Zhao Q: Evodiamine-A Privileged Structure with Broad-Ranging Biological Activities. Mini Rev Med Chem. 2022 Apr 4. pii: MRMC-EPUB-122213. doi: 10.2174/1389557522666220404090835. [PubMed:35379148 ]