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Record Information
Version2.0
Created at2022-04-27 22:15:27 UTC
Updated at2022-04-27 22:15:27 UTC
NP-MRD IDNP0050848
Secondary Accession NumbersNone
Natural Product Identification
Common NameCaracurine V
DescriptionCaracurine V belongs to the class of organic compounds known as strychnos alkaloids. These are alkaloids having a core structure based on the strychnan, stemmadenine (seco-curan), or the akuammicine (curan) skeleton. Caracurine V is found in Apis cerana, Strychnos afzelii, Strychnos dolichothyrsa and Strychnos toxifera . Caracurine V was first documented in 2002 (PMID: 12825791). Based on a literature review a small amount of articles have been published on Caracurine V (PMID: 35220906) (PMID: 17722904) (PMID: 15519170) (PMID: 15214783).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC38H40N4O2
Average Mass584.7640 Da
Monoisotopic Mass584.31513 Da
IUPAC Name(1R,9R,16S,18R,19R,20S,21R,29R,36S,38R,39R,40S)-10,30-dioxa-8,15,28,35-tetraazatridecacyclo[33.5.2.2^{15,21}.0^{1,36}.0^{2,7}.0^{8,40}.0^{9,19}.0^{13,18}.0^{16,21}.0^{20,28}.0^{22,27}.0^{29,39}.0^{33,38}]tetratetraconta-2,4,6,12,22(27),23,25,32-octaene
Traditional Name(1R,9R,16S,18R,19R,20S,21R,29R,36S,38R,39R,40S)-10,30-dioxa-8,15,28,35-tetraazatridecacyclo[33.5.2.2^{15,21}.0^{1,36}.0^{2,7}.0^{8,40}.0^{9,19}.0^{13,18}.0^{16,21}.0^{20,28}.0^{22,27}.0^{29,39}.0^{33,38}]tetratetraconta-2,4,6,12,22(27),23,25,32-octaene
CAS Registry NumberNot Available
SMILES
C1C[C@@]23[C@@H]4C[C@@H]5[C@@H]6[C@@H]2N([C@@H]2OCC=C7CN8CC[C@@]9%10[C@@H]8C[C@@H]7[C@@H]2[C@@H]9N([C@@H]6OCC=C5CN14)C1=C%10C=CC=C1)C1=CC=CC=C31
InChI Identifier
InChI=1S/C38H40N4O2/c1-3-7-27-25(5-1)37-11-13-39-19-21-10-16-44-36-31(23(21)17-29(37)39)33(37)41(27)35-32-24-18-30-38(12-14-40(30)20-22(24)9-15-43-35)26-6-2-4-8-28(26)42(36)34(32)38/h1-10,23-24,29-36H,11-20H2/t23-,24-,29-,30-,31+,32+,33-,34-,35+,36+,37+,38+/m0/s1
InChI KeyCIRUUTNLDXXBKU-HCKBHOMASA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Apis ceranaLOTUS Database
Strychnos afzeliiPlant
Strychnos dolichothyrsaPlant
Strychnos toxiferaPlant
Chemical Taxonomy
Description Belongs to the class of organic compounds known as strychnos alkaloids. These are alkaloids having a core structure based on the strychnan, stemmadenine (seco-curan), or the akuammicine (curan) skeleton.
KingdomOrganic compounds
Super ClassAlkaloids and derivatives
ClassStrychnos alkaloids
Sub ClassNot Available
Direct ParentStrychnos alkaloids
Alternative Parents
Substituents
  • Strychnan skeleton
  • Akuammicine-skeleton
  • Stemmadenine-skeleton
  • Carbazole
  • Indole or derivatives
  • Indolizidine
  • Dialkylarylamine
  • Aralkylamine
  • Piperidine
  • Benzenoid
  • N-alkylpyrrolidine
  • Pyrrolidine
  • Tertiary aliphatic amine
  • Tertiary amine
  • Organoheterocyclic compound
  • Azacycle
  • Oxacycle
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organonitrogen compound
  • Organopnictogen compound
  • Organic oxygen compound
  • Organic nitrogen compound
  • Amine
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.89ALOGPS
logP4.39ChemAxon
logS-3.8ALOGPS
pKa (Strongest Basic)9.81ChemAxon
Physiological Charge2ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area31.42 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity171.42 m³·mol⁻¹ChemAxon
Polarizability64.44 ųChemAxon
Number of Rings13ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00001702
Chemspider ID10207549
KEGG Compound IDC09100
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound168927
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Joshi BP, Bhandare VV, Patel P, Sharma A, Patel R, Krishnamurthy R: Molecular modelling studies and identification of novel phytochemical inhibitor of DLL3. J Biomol Struct Dyn. 2022 Feb 27:1-21. doi: 10.1080/07391102.2022.2045224. [PubMed:35220906 ]
  2. Jensen AA, Zlotos DP, Liljefors T: Pharmacological characteristics and binding modes of caracurine V analogues and related compounds at the neuronal alpha7 nicotinic acetylcholine receptor. J Med Chem. 2007 Sep 20;50(19):4616-29. doi: 10.1021/jm070574f. Epub 2007 Aug 28. [PubMed:17722904 ]
  3. Zlotos DP, Gundisch D, Ferraro S, Tilotta MC, Stiefl N, Baumann K: Bisquaternary caracurine V and iso-caracurine V salts as ligands for the muscle type of nicotinic acetylcholine receptors: SAR and QSAR studies. Bioorg Med Chem. 2004 Dec 1;12(23):6277-85. doi: 10.1016/j.bmc.2004.08.053. [PubMed:15519170 ]
  4. Zlotos DP, Buller S, Stiefl N, Baumann K, Mohr K: Probing the pharmacophore for allosteric ligands of muscarinic M2 receptors: SAR and QSAR studies in a series of bisquaternary salts of caracurine V and related ring systems. J Med Chem. 2004 Jul 1;47(14):3561-71. doi: 10.1021/jm0311341. [PubMed:15214783 ]
  5. Johren K, Holtje HD: A model of the human M2 muscarinic acetylcholine receptor. J Comput Aided Mol Des. 2002 Nov;16(11):795-801. doi: 10.1023/a:1023880611709. [PubMed:12825791 ]