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Record Information
Version2.0
Created at2022-04-27 22:10:14 UTC
Updated at2022-04-27 22:10:14 UTC
NP-MRD IDNP0050826
Secondary Accession NumbersNone
Natural Product Identification
Common NameAgroclavine
DescriptionAgroclavine belongs to the class of organic compounds known as clavines and derivatives. These are hydroxy and dehydro derivatives of 6,8-dimethylergolenes and the corresponding ergolines. Agroclavine is a primary metabolite. Primary metabolites are metabolically or physiologically essential metabolites. They are directly involved in an organism’s growth, development or reproduction. Agroclavine is found in Agropyrum ciliare, Agropyrum semicostatum, Argyreia nervosa , Bakabsua obtecta B249, Balansia epichloe, Balansia strangulans, Claviceps paspali, Claviceps purpurea , Cuscuta spp., Epichloe festucae Fl1, Epichloe inebrians e818, Ipomoea capillacea, Ipomoea corymbosa, Ipomoea hederacea, Ipomoea spp., Neotyphodium gansuense, Penicillium dierckxii, Pennisetum typhoideum , Periglandula ipomoeae lasaF13 and Rivea spp.. Agroclavine was first documented in 2018 (PMID: 29235356). Based on a literature review a small amount of articles have been published on agroclavine (PMID: 34902590) (PMID: 34680698) (PMID: 32072845).
Structure
Thumb
Synonyms
ValueSource
(-)-AgroclavineChEBI
(5R,10R)-AgroclavineChEBI
(6AR,10ar)-7,9-dimethyl-4,6,6a,7,8,10a-hexahydroindolo[4,3-FG]quinolineChEBI
8,9-Didehydro-6,8-dimethylergolineChEBI
Agroclavine-1MeSH
Chemical FormulaC16H18N2
Average Mass238.3340 Da
Monoisotopic Mass238.14700 Da
IUPAC Name(2R,7R)-4,6-dimethyl-6,11-diazatetracyclo[7.6.1.0^{2,7}.0^{12,16}]hexadeca-1(16),3,9,12,14-pentaene
Traditional Name(2R,7R)-4,6-dimethyl-6,11-diazatetracyclo[7.6.1.0^{2,7}.0^{12,16}]hexadeca-1(16),3,9,12,14-pentaene
CAS Registry NumberNot Available
SMILES
CN1CC(C)=C[C@H]2[C@H]1CC1=CNC3=CC=CC2=C13
InChI Identifier
InChI=1S/C16H18N2/c1-10-6-13-12-4-3-5-14-16(12)11(8-17-14)7-15(13)18(2)9-10/h3-6,8,13,15,17H,7,9H2,1-2H3/t13-,15-/m1/s1
InChI KeyXJOOMMHNYOJWCZ-UKRRQHHQSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Agropyrum ciliare-
Agropyrum semicostatum-
Argyreia nervosaPlant
Bakabsua obtecta B249-
Balansia epichloeLOTUS Database
Balansia strangulansLOTUS Database
Claviceps paspaliFungi
Claviceps purpureaFungi
Cuscuta spp.Plant
Epichloe festucae Fl1Fungi
Epichloe inebrians e818Fungi
Ipomoea capillaceaLOTUS Database
Ipomoea corymbosaPlant
Ipomoea hederaceaLOTUS Database
Ipomoea spp.Plant
Neotyphodium gansuense-
Penicillium dierckxiiLOTUS Database
Pennisetum americanumPlant
Periglandula ipomoeae lasaF13-
Rivea spp.Plant
Chemical Taxonomy
Description Belongs to the class of organic compounds known as clavines and derivatives. These are hydroxy and dehydro derivatives of 6,8-dimethylergolenes and the corresponding ergolines.
KingdomOrganic compounds
Super ClassAlkaloids and derivatives
ClassErgoline and derivatives
Sub ClassClavines and derivatives
Direct ParentClavines and derivatives
Alternative Parents
Substituents
  • Clavine skeleton
  • Benzoquinoline
  • Pyrroloquinoline
  • Quinoline
  • 3-alkylindole
  • Indole
  • Indole or derivatives
  • Isoindole or derivatives
  • Aralkylamine
  • Benzenoid
  • Pyrrole
  • Heteroaromatic compound
  • Tertiary aliphatic amine
  • Tertiary amine
  • Organoheterocyclic compound
  • Azacycle
  • Amine
  • Organonitrogen compound
  • Hydrocarbon derivative
  • Organopnictogen compound
  • Organic nitrogen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.84ALOGPS
logP2.78ChemAxon
logS-3.3ALOGPS
pKa (Strongest Acidic)17.05ChemAxon
pKa (Strongest Basic)8.4ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count1ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area19.03 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity76.01 m³·mol⁻¹ChemAxon
Polarizability28.13 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00001677
Chemspider ID66176
KEGG Compound IDC09023
BioCyc IDCPD-12357
BiGG IDNot Available
Wikipedia LinkAgroclavine
METLIN IDNot Available
PubChem Compound73484
PDB IDNot Available
ChEBI ID2519
Good Scents IDNot Available
References
General References
  1. Chaudhuri S, Bhunia S, Roy A, Das MK, Bisai A: Biomimetic Total Syntheses of Clavine Alkaloids. Org Lett. 2018 Jan 5;20(1):288-291. doi: 10.1021/acs.orglett.7b03683. Epub 2017 Dec 13. [PubMed:29235356 ]
  2. Yao Y, Wang W, Shi W, Yan R, Zhang J, Wei G, Liu L, Che Y, An C, Gao SS: Overproduction of medicinal ergot alkaloids based on a fungal platform. Metab Eng. 2022 Jan;69:198-208. doi: 10.1016/j.ymben.2021.12.002. Epub 2021 Dec 10. [PubMed:34902590 ]
  3. Chen XD, Kaur N, Horton DR, Cooper WR, Qureshi JA, Stelinski LL: Crude Extracts and Alkaloids Derived from Ipomoea-Periglandula Symbiotic Association Cause Mortality of Asian Citrus Psyllid Diaphorina citri Kuwayama (Hemiptera: Psyllidae). Insects. 2021 Oct 12;12(10). pii: insects12100929. doi: 10.3390/insects12100929. [PubMed:34680698 ]
  4. Vorobyov V, Medvinskaya N, Deev A, Sengpiel F, Bobkova N, Lunin S: Spatial memory deficits initiated by agroclavine injection or olfactory bulbectomy in rats are characterized by different levels of long-term potentiation expression in the hippocampus. Int J Neurosci. 2020 Dec;130(12):1225-1229. doi: 10.1080/00207454.2020.1732963. Epub 2020 Feb 28. [PubMed:32072845 ]