| Record Information |
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| Version | 2.0 |
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| Created at | 2022-04-27 22:10:14 UTC |
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| Updated at | 2022-04-27 22:10:14 UTC |
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| NP-MRD ID | NP0050826 |
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| Secondary Accession Numbers | None |
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| Natural Product Identification |
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| Common Name | Agroclavine |
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| Description | Agroclavine belongs to the class of organic compounds known as clavines and derivatives. These are hydroxy and dehydro derivatives of 6,8-dimethylergolenes and the corresponding ergolines. Agroclavine is a primary metabolite. Primary metabolites are metabolically or physiologically essential metabolites. They are directly involved in an organism’s growth, development or reproduction. Agroclavine is found in Agropyrum ciliare, Agropyrum semicostatum, Argyreia nervosa , Bakabsua obtecta B249, Balansia epichloe, Balansia strangulans, Claviceps paspali, Claviceps purpurea , Cuscuta spp., Epichloe festucae Fl1, Epichloe inebrians e818, Ipomoea capillacea, Ipomoea corymbosa, Ipomoea hederacea, Ipomoea spp., Neotyphodium gansuense, Penicillium dierckxii, Pennisetum typhoideum , Periglandula ipomoeae lasaF13 and Rivea spp.. Agroclavine was first documented in 2018 (PMID: 29235356). Based on a literature review a small amount of articles have been published on agroclavine (PMID: 34902590) (PMID: 34680698) (PMID: 32072845). |
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| Structure | CN1CC(C)=C[C@H]2[C@H]1CC1=CNC3=CC=CC2=C13 InChI=1S/C16H18N2/c1-10-6-13-12-4-3-5-14-16(12)11(8-17-14)7-15(13)18(2)9-10/h3-6,8,13,15,17H,7,9H2,1-2H3/t13-,15-/m1/s1 |
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| Synonyms | | Value | Source |
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| (-)-Agroclavine | ChEBI | | (5R,10R)-Agroclavine | ChEBI | | (6AR,10ar)-7,9-dimethyl-4,6,6a,7,8,10a-hexahydroindolo[4,3-FG]quinoline | ChEBI | | 8,9-Didehydro-6,8-dimethylergoline | ChEBI | | Agroclavine-1 | MeSH |
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| Chemical Formula | C16H18N2 |
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| Average Mass | 238.3340 Da |
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| Monoisotopic Mass | 238.14700 Da |
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| IUPAC Name | (2R,7R)-4,6-dimethyl-6,11-diazatetracyclo[7.6.1.0^{2,7}.0^{12,16}]hexadeca-1(16),3,9,12,14-pentaene |
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| Traditional Name | (2R,7R)-4,6-dimethyl-6,11-diazatetracyclo[7.6.1.0^{2,7}.0^{12,16}]hexadeca-1(16),3,9,12,14-pentaene |
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| CAS Registry Number | Not Available |
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| SMILES | CN1CC(C)=C[C@H]2[C@H]1CC1=CNC3=CC=CC2=C13 |
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| InChI Identifier | InChI=1S/C16H18N2/c1-10-6-13-12-4-3-5-14-16(12)11(8-17-14)7-15(13)18(2)9-10/h3-6,8,13,15,17H,7,9H2,1-2H3/t13-,15-/m1/s1 |
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| InChI Key | XJOOMMHNYOJWCZ-UKRRQHHQSA-N |
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| Experimental Spectra |
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| Not Available | | Predicted Spectra |
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| | Spectrum Type | Description | Depositor ID | Depositor Organization | Depositor | Deposition Date | View |
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| 1D NMR | 13C NMR Spectrum (1D, 25 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 100 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 252 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 1000 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 50 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 200 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 75 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 300 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 101 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 400 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 126 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 500 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 151 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 600 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 176 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 700 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 201 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 800 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 226 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 900 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum |
| | Chemical Shift Submissions |
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| Not Available | | Species |
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| Species of Origin | |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as clavines and derivatives. These are hydroxy and dehydro derivatives of 6,8-dimethylergolenes and the corresponding ergolines. |
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| Kingdom | Organic compounds |
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| Super Class | Alkaloids and derivatives |
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| Class | Ergoline and derivatives |
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| Sub Class | Clavines and derivatives |
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| Direct Parent | Clavines and derivatives |
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| Alternative Parents | |
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| Substituents | - Clavine skeleton
- Benzoquinoline
- Pyrroloquinoline
- Quinoline
- 3-alkylindole
- Indole
- Indole or derivatives
- Isoindole or derivatives
- Aralkylamine
- Benzenoid
- Pyrrole
- Heteroaromatic compound
- Tertiary aliphatic amine
- Tertiary amine
- Organoheterocyclic compound
- Azacycle
- Amine
- Organonitrogen compound
- Hydrocarbon derivative
- Organopnictogen compound
- Organic nitrogen compound
- Aromatic heteropolycyclic compound
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| Molecular Framework | Aromatic heteropolycyclic compounds |
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| External Descriptors | |
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| Physical Properties |
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| State | Not Available |
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| Experimental Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Predicted Properties | |
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| General References | - Chaudhuri S, Bhunia S, Roy A, Das MK, Bisai A: Biomimetic Total Syntheses of Clavine Alkaloids. Org Lett. 2018 Jan 5;20(1):288-291. doi: 10.1021/acs.orglett.7b03683. Epub 2017 Dec 13. [PubMed:29235356 ]
- Yao Y, Wang W, Shi W, Yan R, Zhang J, Wei G, Liu L, Che Y, An C, Gao SS: Overproduction of medicinal ergot alkaloids based on a fungal platform. Metab Eng. 2022 Jan;69:198-208. doi: 10.1016/j.ymben.2021.12.002. Epub 2021 Dec 10. [PubMed:34902590 ]
- Chen XD, Kaur N, Horton DR, Cooper WR, Qureshi JA, Stelinski LL: Crude Extracts and Alkaloids Derived from Ipomoea-Periglandula Symbiotic Association Cause Mortality of Asian Citrus Psyllid Diaphorina citri Kuwayama (Hemiptera: Psyllidae). Insects. 2021 Oct 12;12(10). pii: insects12100929. doi: 10.3390/insects12100929. [PubMed:34680698 ]
- Vorobyov V, Medvinskaya N, Deev A, Sengpiel F, Bobkova N, Lunin S: Spatial memory deficits initiated by agroclavine injection or olfactory bulbectomy in rats are characterized by different levels of long-term potentiation expression in the hippocampus. Int J Neurosci. 2020 Dec;130(12):1225-1229. doi: 10.1080/00207454.2020.1732963. Epub 2020 Feb 28. [PubMed:32072845 ]
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