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Showing NP-Card for Luciculine (NP0050806)

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Record Information
Version2.0
Created at2022-04-27 22:08:13 UTC
Updated at2022-04-27 22:08:13 UTC
NP-MRD IDNP0050806
Secondary Accession NumbersNone
Natural Product Identification
Common NameLuciculine
Description Luciculine is found in Aconitum karakolicum, Aconitum napellus and Aconitum soongoricum.
Structure
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MOLSDFPDBSMILESInChI

MOL for NP0050806 (Luciculine)


  Mrv1652304282200082D          

 26 31  0  0  1  0            999 V2000
    0.5123   -0.4648    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0168   -1.1591    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3156   -1.9802    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0516   -1.7554    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7001   -1.4890    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3454   -0.6463    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8727   -0.0118    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3968   -0.9883    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0288   -1.5922    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5009   -2.2827    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4527   -2.4785    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9595   -2.5007    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3651   -3.1279    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.5567   -2.8264    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5512   -3.9316    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9483   -4.4947    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8752   -1.8871    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.4466   -1.2272    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2690   -1.2924    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9968   -0.5023    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4155    0.1233    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5936   -0.1033    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6408    0.9170    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4608   -1.0369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0880   -2.6841    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4692   -2.2344    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  5  4  1  1  0  0  0
  5  6  1  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  6  0  0  0
  5  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  1  0  0  0
  4 11  1  6  0  0  0
 10 12  1  0  0  0  0
  5 12  1  0  0  0  0
 12 13  1  1  0  0  0
 13 14  1  0  0  0  0
  3 14  1  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
  9 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
  8 22  1  6  0  0  0
 21 23  1  6  0  0  0
 20 24  1  6  0  0  0
  9 24  1  6  0  0  0
 17 25  1  1  0  0  0
  3 26  1  1  0  0  0
M  END
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3D MOL for NP0050806 (Luciculine)

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3D SDF for NP0050806 (Luciculine)

  Mrv1652304282200082D          

 26 31  0  0  1  0            999 V2000
    0.5123   -0.4648    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0168   -1.1591    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3156   -1.9802    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0516   -1.7554    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7001   -1.4890    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3454   -0.6463    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8727   -0.0118    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3968   -0.9883    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0288   -1.5922    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5009   -2.2827    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4527   -2.4785    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9595   -2.5007    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3651   -3.1279    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.5567   -2.8264    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5512   -3.9316    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9483   -4.4947    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8752   -1.8871    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.4466   -1.2272    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2690   -1.2924    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9968   -0.5023    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4155    0.1233    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5936   -0.1033    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6408    0.9170    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4608   -1.0369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0880   -2.6841    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4692   -2.2344    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  5  4  1  1  0  0  0
  5  6  1  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  6  0  0  0
  5  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  1  0  0  0
  4 11  1  6  0  0  0
 10 12  1  0  0  0  0
  5 12  1  0  0  0  0
 12 13  1  1  0  0  0
 13 14  1  0  0  0  0
  3 14  1  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
  9 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
  8 22  1  6  0  0  0
 21 23  1  6  0  0  0
 20 24  1  6  0  0  0
  9 24  1  6  0  0  0
 17 25  1  1  0  0  0
  3 26  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0050806

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCN1C[C@]2(C)CC[C@H](O)[C@]34[C@H]1[C@H](C[C@H]23)[C@@]12C[C@@H]([C@@H](O)C[C@@H]41)C(=C)[C@H]2O

> <INCHI_IDENTIFIER>
InChI=1S/C22H33NO3/c1-4-23-10-20(3)6-5-17(25)22-15(20)7-13(18(22)23)21-9-12(11(2)19(21)26)14(24)8-16(21)22/h12-19,24-26H,2,4-10H2,1,3H3/t12-,13+,14+,15?,16-,17+,18-,19-,20+,21+,22+/m1/s1

> <INCHI_KEY>
AZAZKLKDEOMJBJ-JSUSZRJDSA-N

> <FORMULA>
C22H33NO3

> <MOLECULAR_WEIGHT>
359.51

> <EXACT_MASS>
359.246043927

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
59

> <JCHEM_AVERAGE_POLARIZABILITY>
40.957147912790106

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,2R,4S,5R,7R,8R,9R,10R,13R,16S,17R)-11-ethyl-13-methyl-6-methylidene-11-azahexacyclo[7.7.2.1^{5,8}.0^{1,10}.0^{2,8}.0^{13,17}]nonadecane-4,7,16-triol

> <ALOGPS_LOGP>
1.05

> <JCHEM_LOGP>
0.5308862870000011

> <ALOGPS_LOGS>
-2.02

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
14.56524837358453

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.954239611085207

> <JCHEM_PKA_STRONGEST_BASIC>
9.946043611762859

> <JCHEM_POLAR_SURFACE_AREA>
63.93000000000001

> <JCHEM_REFRACTIVITY>
99.6886

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.43e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2R,4S,5R,7R,8R,9R,10R,13R,16S,17R)-11-ethyl-13-methyl-6-methylidene-11-azahexacyclo[7.7.2.1^{5,8}.0^{1,10}.0^{2,8}.0^{13,17}]nonadecane-4,7,16-triol

> <JCHEM_VEBER_RULE>
0

$$$$

Download
3D-SDF for NP0050806 (Luciculine)
Download
PDB for NP0050806 (Luciculine)
HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       0.956  -0.868   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.031  -2.164   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.589  -3.696   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.963  -3.277   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.174  -2.779   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.511  -1.206   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       3.496  -0.022   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       4.474  -1.845   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.654  -2.972   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.668  -4.261   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.712  -4.627   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       3.658  -4.668   0.000  0.00  0.00           C+0
HETATM   13  N   UNK     0       2.548  -5.839   0.000  0.00  0.00           N+0
HETATM   14  C   UNK     0       1.039  -5.276   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.896  -7.339   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.770  -8.390   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       7.234  -3.523   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       8.300  -2.291   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       9.836  -2.413   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       7.461  -0.938   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       6.376   0.230   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.841  -0.193   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       6.796   1.712   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       6.460  -1.936   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       7.631  -5.010   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      -0.876  -4.171   0.000  0.00  0.00           C+0
CONECT    1    2    6                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4   14   26                                             
CONECT    4    3    5   11                                                  
CONECT    5    4    6    8   12                                             
CONECT    6    5    1    7                                                  
CONECT    7    6                                                            
CONECT    8    5    9   22                                                  
CONECT    9    8   10   17   24                                             
CONECT   10    9   11   12                                                  
CONECT   11   10    4                                                       
CONECT   12   10    5   13                                                  
CONECT   13   12   14   15                                                  
CONECT   14   13    3                                                       
CONECT   15   13   16                                                       
CONECT   16   15                                                            
CONECT   17    9   18   25                                                  
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21   24                                                  
CONECT   21   20   22   23                                                  
CONECT   22   21    8                                                       
CONECT   23   21                                                            
CONECT   24   20    9                                                       
CONECT   25   17                                                            
CONECT   26    3                                                            
MASTER        0    0    0    0    0    0    0    0   26    0   62    0
END

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3D PDB for NP0050806 (Luciculine)
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SMILES for NP0050806 (Luciculine)
CCN1C[C@]2(C)CC[C@H](O)[C@]34[C@H]1[C@H](C[C@H]23)[C@@]12C[C@@H]([C@@H](O)C[C@@H]41)C(=C)[C@H]2O
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INCHI for NP0050806 (Luciculine)
InChI=1S/C22H33NO3/c1-4-23-10-20(3)6-5-17(25)22-15(20)7-13(18(22)23)21-9-12(11(2)19(21)26)14(24)8-16(21)22/h12-19,24-26H,2,4-10H2,1,3H3/t12-,13+,14+,15?,16-,17+,18-,19-,20+,21+,22+/m1/s1
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View in JSmol
SynonymsNot Available
Chemical FormulaC22H33NO3
Average Mass359.5100 Da
Monoisotopic Mass359.24604 Da
IUPAC Name(1R,2R,4S,5R,7R,8R,9R,10R,13R,16S,17R)-11-ethyl-13-methyl-6-methylidene-11-azahexacyclo[7.7.2.1^{5,8}.0^{1,10}.0^{2,8}.0^{13,17}]nonadecane-4,7,16-triol
Traditional Name(1R,2R,4S,5R,7R,8R,9R,10R,13R,16S,17R)-11-ethyl-13-methyl-6-methylidene-11-azahexacyclo[7.7.2.1^{5,8}.0^{1,10}.0^{2,8}.0^{13,17}]nonadecane-4,7,16-triol
CAS Registry NumberNot Available
SMILES
CCN1C[C@]2(C)CC[C@H](O)[C@]34[C@H]1[C@H](C[C@H]23)[C@@]12C[C@@H]([C@@H](O)C[C@@H]41)C(=C)[C@H]2O
InChI Identifier
InChI=1S/C22H33NO3/c1-4-23-10-20(3)6-5-17(25)22-15(20)7-13(18(22)23)21-9-12(11(2)19(21)26)14(24)8-16(21)22/h12-19,24-26H,2,4-10H2,1,3H3/t12-,13+,14+,15?,16-,17+,18-,19-,20+,21+,22+/m1/s1
InChI KeyAZAZKLKDEOMJBJ-JSUSZRJDSA-N
Experimental Spectra
Not Available
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Aconitum karakolicumPlant
Aconitum napellusPlant
Aconitum soongoricumPlant
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1.05ALOGPS
logP0.53ChemAxon
logS-2ALOGPS
pKa (Strongest Acidic)13.95ChemAxon
pKa (Strongest Basic)9.95ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area63.93 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity99.69 m³·mol⁻¹ChemAxon
Polarizability40.96 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
External LinksNot Available
References
General ReferencesNot Available