NP-MRD: Showing NP-Card for Gibberellin A106 (NP0050501)

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Record Information

Version

2.0

Created at

2022-04-27 21:46:13 UTC

Updated at

2022-04-27 21:46:13 UTC

NP-MRD ID

NP0050501

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Gibberellin A106

Description

(1R,2S,5R,7R,8S,9S,10R,11R,12S)-12-hydroxy-11-methyl-6-methylidene-16-oxo-15-oxahexacyclo[9.3.2.1⁵,⁸.0¹,¹⁰.0²,⁷.0²,⁸]Heptadecane-9-carboxylic acid belongs to the class of organic compounds known as c19-gibberellin 6-carboxylic acids. These are c19-gibberellins with a carboxyl group at the 6-position. Gibberellin A106 is found in Malus domestica . Based on a literature review very few articles have been published on (1R,2S,5R,7R,8S,9S,10R,11R,12S)-12-hydroxy-11-methyl-6-methylidene-16-oxo-15-oxahexacyclo[9.3.2.1⁵,⁸.0¹,¹⁰.0²,⁷.0²,⁸]Heptadecane-9-carboxylic acid.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652304272223462D          

 24 29  0  0  1  0            999 V2000
    2.8041    0.2256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7371   -0.5967    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.0525   -1.0570    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5032   -0.2753    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3864    0.6730    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.2030    0.7907    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4087    0.8755    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0067    0.1897    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.6866   -0.4777    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.4444   -1.4363    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9450   -2.2847    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3342   -1.8681    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4605   -0.5759    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1462   -0.4938    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0618    0.2530    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0485    0.8994    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8309   -0.0629    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7048    0.0708    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4839    0.7431    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9693   -0.0388    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2657   -0.8087    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1039   -1.6676    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4552   -1.8263    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5238   -0.9515    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  4  3  1  1  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  1  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  4  9  1  0  0  0  0
  9 10  1  6  0  0  0
 10 11  2  0  0  0  0
 10 12  1  0  0  0  0
  8 13  1  1  0  0  0
 14 13  1  6  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
  7 16  1  1  0  0  0
 14 17  1  0  0  0  0
 17 18  2  0  0  0  0
 19 17  1  1  0  0  0
  7 19  1  0  0  0  0
  8 19  1  0  0  0  0
  5 20  1  6  0  0  0
 20 21  1  0  0  0  0
  3 21  1  0  0  0  0
 21 22  2  0  0  0  0
  3 23  1  1  0  0  0
  2 24  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0050501

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@]12[C@H]3[C@H](C(O)=O)[C@@]45C[C@H]6CC[C@@]4([C@@H]5C6=C)[C@]3(CC[C@@H]1O)OC2=O

> <INCHI_IDENTIFIER>
InChI=1S/C19H22O5/c1-8-9-3-5-18-12(8)17(18,7-9)11(14(21)22)13-16(2)10(20)4-6-19(13,18)24-15(16)23/h9-13,20H,1,3-7H2,2H3,(H,21,22)/t9-,10+,11-,12-,13-,16+,17-,18+,19-/m1/s1

> <INCHI_KEY>
LFLLPNOJQRBWAP-IWXPITLJSA-N

> <FORMULA>
C19H22O5

> <MOLECULAR_WEIGHT>
330.38

> <EXACT_MASS>
330.146723808

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
46

> <JCHEM_AVERAGE_POLARIZABILITY>
34.29453710754553

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,2S,5R,7R,8S,9S,10R,11R,12S)-12-hydroxy-11-methyl-6-methylidene-16-oxo-15-oxahexacyclo[9.3.2.1^{5,8}.0^{1,10}.0^{2,7}.0^{2,8}]heptadecane-9-carboxylic acid

> <ALOGPS_LOGP>
1.39

> <JCHEM_LOGP>
0.8724764990000002

> <ALOGPS_LOGS>
-2.36

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
14.445556073620313

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.19229710020304

> <JCHEM_PKA_STRONGEST_BASIC>
-3.0419727914674226

> <JCHEM_POLAR_SURFACE_AREA>
83.83

> <JCHEM_REFRACTIVITY>
82.02129999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.45e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2S,5R,7R,8S,9S,10R,11R,12S)-12-hydroxy-11-methyl-6-methylidene-16-oxo-15-oxahexacyclo[9.3.2.1^{5,8}.0^{1,10}.0^{2,7}.0^{2,8}]heptadecane-9-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 27-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   27-APR-22         0                                  
HETATM    1  C   UNK     0       5.234   0.421   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.109  -1.114   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.831  -1.973   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.806  -0.514   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.588   1.256   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.112   1.476   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.763   1.634   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.013   0.354   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.282  -0.892   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.829  -2.681   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       1.764  -4.265   0.000  0.00  0.00           O+0
HETATM   12  O   UNK     0      -0.624  -3.487   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      -0.860  -1.075   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.273  -0.922   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.982   0.472   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.957   1.679   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -1.551  -0.117   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -3.182   0.132   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -0.903   1.387   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       1.809  -0.072   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       2.363  -1.510   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       2.061  -3.113   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       4.583  -3.409   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       6.578  -1.776   0.000  0.00  0.00           O+0
CONECT    1    2    6                                                       
CONECT    2    1    3   24                                                  
CONECT    3    2    4   21   23                                             
CONECT    4    3    5    9                                                  
CONECT    5    4    6    7   20                                             
CONECT    6    5    1                                                       
CONECT    7    5    8   16   19                                             
CONECT    8    7    9   13   19                                             
CONECT    9    8    4   10                                                  
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10                                                            
CONECT   13    8   14                                                       
CONECT   14   13   15   17                                                  
CONECT   15   14   16                                                       
CONECT   16   15    7                                                       
CONECT   17   14   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17    7    8                                                  
CONECT   20    5   21                                                       
CONECT   21   20    3   22                                                  
CONECT   22   21                                                            
CONECT   23    3                                                            
CONECT   24    2                                                            
MASTER        0    0    0    0    0    0    0    0   24    0   58    0
END

View in JSmol

Synonyms

Value	Source
(1R,2S,5R,7R,8S,9S,10R,11R,12S)-12-Hydroxy-11-methyl-6-methylidene-16-oxo-15-oxahexacyclo[9.3.2.1,.0,.0,.0,]heptadecane-9-carboxylate	Generator

Chemical Formula

C₁₉H₂₂O₅

Average Mass

330.3800 Da

Monoisotopic Mass

330.14672 Da

IUPAC Name

(1R,2S,5R,7R,8S,9S,10R,11R,12S)-12-hydroxy-11-methyl-6-methylidene-16-oxo-15-oxahexacyclo[9.3.2.1^{5,8}.0^{1,10}.0^{2,7}.0^{2,8}]heptadecane-9-carboxylic acid

Traditional Name

(1R,2S,5R,7R,8S,9S,10R,11R,12S)-12-hydroxy-11-methyl-6-methylidene-16-oxo-15-oxahexacyclo[9.3.2.1^{5,8}.0^{1,10}.0^{2,7}.0^{2,8}]heptadecane-9-carboxylic acid

CAS Registry Number

Not Available

SMILES

C[C@@]12[C@H]3[C@H](C(O)=O)[C@@]45C[C@H]6CC[C@@]4([C@@H]5C6=C)[C@]3(CC[C@@H]1O)OC2=O

InChI Identifier

InChI=1S/C19H22O5/c1-8-9-3-5-18-12(8)17(18,7-9)11(14(21)22)13-16(2)10(20)4-6-19(13,18)24-15(16)23/h9-13,20H,1,3-7H2,2H3,(H,21,22)/t9-,10+,11-,12-,13-,16+,17-,18+,19-/m1/s1

InChI Key

LFLLPNOJQRBWAP-IWXPITLJSA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Malus domestica	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as c19-gibberellin 6-carboxylic acids. These are c19-gibberellins with a carboxyl group at the 6-position.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

C19-gibberellin 6-carboxylic acids

Alternative Parents

Substituents

20-norgibberellane-6-carboxylic acid
Diterpene lactone
Naphthofuran
Caprolactone
Oxepane
Gamma butyrolactone
Dicarboxylic acid or derivatives
Tetrahydrofuran
Cyclic alcohol
Secondary alcohol
Lactone
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.39	ALOGPS
logP	0.87	ChemAxon
logS	-2.4	ALOGPS
pKa (Strongest Acidic)	4.19	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	83.83 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	82.02 m³·mol⁻¹	ChemAxon
Polarizability	34.29 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163104850

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Gibberellin A106 (NP0050501)

MOL for NP0050501 (Gibberellin A106)

3D MOL for NP0050501 (Gibberellin A106)

3D SDF for NP0050501 (Gibberellin A106)

3D-SDF for NP0050501 (Gibberellin A106)

PDB for NP0050501 (Gibberellin A106)

3D PDB for NP0050501 (Gibberellin A106)

SMILES for NP0050501 (Gibberellin A106)

INCHI for NP0050501 (Gibberellin A106)

Structure for NP0050501 (Gibberellin A106)

3D Structure for NP0050501 (Gibberellin A106)