NP-MRD: Showing NP-Card for 2-Deoxycastasterone (NP0050215)

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Record Information

Version

2.0

Created at

2022-04-27 20:48:27 UTC

Updated at

2022-04-27 20:48:27 UTC

NP-MRD ID

NP0050215

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2-Deoxycastasterone

Description

(1S,2R,5R,7S,10S,11S,14R,15R)-14-[(2S,3R,4R,5S)-3,4-dihydroxy-5,6-dimethylheptan-2-yl]-5-hydroxy-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]Heptadecan-8-one belongs to the class of organic compounds known as trihydroxy bile acids, alcohols and derivatives. These are prenol lipids structurally characterized by a bile acid or alcohol which bears three hydroxyl groups. 2-Deoxycastasterone is found in Arabidopsis thaliana, Thea sinensis , Dolichos lablab L. , Picea sitchensis , Pinus thunbergi, Pinus thunbergii, Triticum aestivum , Typha latifolia , Zea mays and Zea mays . Based on a literature review very few articles have been published on (1S,2R,5R,7S,10S,11S,14R,15R)-14-[(2S,3R,4R,5S)-3,4-dihydroxy-5,6-dimethylheptan-2-yl]-5-hydroxy-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]Heptadecan-8-one.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652304272222482D          

 32 35  0  0  1  0            999 V2000
   -3.8560    1.2638    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4080    1.8769    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.1531    2.6615    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3461    2.8330    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.7941    2.2199    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.0490    1.4353    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9871    2.3915    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7322    3.1761    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9252    3.3476    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3732    2.7345    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6281    1.9499    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4351    1.7784    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3805    3.0701    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2943    3.8905    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5127    4.0621    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0950    2.6576    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8094    3.0701    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5239    2.6576    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5239    1.8326    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2384    3.0701    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.9529    2.6576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6673    3.0701    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9529    1.8326    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2384    3.8951    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8094    3.8951    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0950    1.8326    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2399    2.1825    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2842    3.7892    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0912    3.6176    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6432    4.2307    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2421    1.6068    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2150    1.7053    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  4  3  1  6  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  1  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
  7 12  1  6  0  0  0
 10 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
  9 15  1  6  0  0  0
 13 16  1  6  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  1  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 20 24  1  1  0  0  0
 17 25  1  1  0  0  0
 16 26  1  1  0  0  0
 10 27  1  1  0  0  0
  8 28  1  1  0  0  0
 28 29  1  0  0  0  0
  4 29  1  0  0  0  0
 29 30  2  0  0  0  0
  5 31  1  6  0  0  0
  2 32  1  1  0  0  0
M  END


  Mrv1652304272222482D          

 32 35  0  0  1  0            999 V2000
   -3.8560    1.2638    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4080    1.8769    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.1531    2.6615    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3461    2.8330    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.7941    2.2199    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.0490    1.4353    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9871    2.3915    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7322    3.1761    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9252    3.3476    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3732    2.7345    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6281    1.9499    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4351    1.7784    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3805    3.0701    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2943    3.8905    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5127    4.0621    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0950    2.6576    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8094    3.0701    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5239    2.6576    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5239    1.8326    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2384    3.0701    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.9529    2.6576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6673    3.0701    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9529    1.8326    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2384    3.8951    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8094    3.8951    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0950    1.8326    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2399    2.1825    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2842    3.7892    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0912    3.6176    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6432    4.2307    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2421    1.6068    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2150    1.7053    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  4  3  1  6  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  1  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
  7 12  1  6  0  0  0
 10 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
  9 15  1  6  0  0  0
 13 16  1  6  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  1  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 20 24  1  1  0  0  0
 17 25  1  1  0  0  0
 16 26  1  1  0  0  0
 10 27  1  1  0  0  0
  8 28  1  1  0  0  0
 28 29  1  0  0  0  0
  4 29  1  0  0  0  0
 29 30  2  0  0  0  0
  5 31  1  6  0  0  0
  2 32  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0050215

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)[C@H](C)[C@@H](O)[C@H](O)[C@@H](C)[C@H]1CC[C@H]2[C@@H]3CC(=O)[C@H]4C[C@H](O)CC[C@]4(C)[C@H]3CC[C@@]12C

> <INCHI_IDENTIFIER>
InChI=1S/C28H48O4/c1-15(2)16(3)25(31)26(32)17(4)20-7-8-21-19-14-24(30)23-13-18(29)9-11-28(23,6)22(19)10-12-27(20,21)5/h15-23,25-26,29,31-32H,7-14H2,1-6H3/t16-,17-,18+,19-,20+,21-,22-,23+,25+,26+,27-,28+/m0/s1

> <INCHI_KEY>
SBSXXCCMIWEPEE-DIQOEJRUSA-N

> <FORMULA>
C28H48O4

> <MOLECULAR_WEIGHT>
448.688

> <EXACT_MASS>
448.355260026

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
80

> <JCHEM_AVERAGE_POLARIZABILITY>
53.77406719679708

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,2R,5R,7S,10S,11S,14R,15R)-14-[(2S,3R,4R,5S)-3,4-dihydroxy-5,6-dimethylheptan-2-yl]-5-hydroxy-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-8-one

> <ALOGPS_LOGP>
3.73

> <JCHEM_LOGP>
4.576522391

> <ALOGPS_LOGS>
-4.45

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.861077440618988

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.644363838141157

> <JCHEM_PKA_STRONGEST_BASIC>
-2.696313461282922

> <JCHEM_POLAR_SURFACE_AREA>
77.76

> <JCHEM_REFRACTIVITY>
127.85939999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.60e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,2R,5R,7S,10S,11S,14R,15R)-14-[(2S,3R,4R,5S)-3,4-dihydroxy-5,6-dimethylheptan-2-yl]-5-hydroxy-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-8-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 27-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   27-APR-22         0                                  
HETATM    1  C   UNK     0      -7.198   2.359   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -8.228   3.503   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -7.752   4.968   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -6.246   5.288   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -5.216   4.144   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -5.692   2.679   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -3.709   4.464   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -3.233   5.929   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -1.727   6.249   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.697   5.104   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -1.172   3.640   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -2.679   3.320   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.710   5.731   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.549   7.262   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -0.957   7.583   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.044   4.961   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.378   5.731   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.711   4.961   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       4.711   3.421   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       6.045   5.731   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       7.379   4.961   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       8.712   5.731   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       7.379   3.421   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       6.045   7.271   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       3.378   7.271   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0       2.044   3.421   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       0.448   4.074   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      -4.264   7.073   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      -5.770   6.753   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      -6.801   7.897   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0      -4.185   2.999   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0      -9.735   3.183   0.000  0.00  0.00           O+0
CONECT    1    2    6                                                       
CONECT    2    1    3   32                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   29                                                  
CONECT    5    4    6    7   31                                             
CONECT    6    5    1                                                       
CONECT    7    5    8   12                                                  
CONECT    8    7    9   28                                                  
CONECT    9    8   10   15                                                  
CONECT   10    9   11   13   27                                             
CONECT   11   10   12                                                       
CONECT   12   11    7                                                       
CONECT   13   10   14   16                                                  
CONECT   14   13   15                                                       
CONECT   15   14    9                                                       
CONECT   16   13   17   26                                                  
CONECT   17   16   18   25                                                  
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21   24                                                  
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21                                                            
CONECT   24   20                                                            
CONECT   25   17                                                            
CONECT   26   16                                                            
CONECT   27   10                                                            
CONECT   28    8   29                                                       
CONECT   29   28    4   30                                                  
CONECT   30   29                                                            
CONECT   31    5                                                            
CONECT   32    2                                                            
MASTER        0    0    0    0    0    0    0    0   32    0   70    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₈H₄₈O₄

Average Mass

448.6880 Da

Monoisotopic Mass

448.35526 Da

IUPAC Name

(1S,2R,5R,7S,10S,11S,14R,15R)-14-[(2S,3R,4R,5S)-3,4-dihydroxy-5,6-dimethylheptan-2-yl]-5-hydroxy-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-8-one

Traditional Name

(1S,2R,5R,7S,10S,11S,14R,15R)-14-[(2S,3R,4R,5S)-3,4-dihydroxy-5,6-dimethylheptan-2-yl]-5-hydroxy-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-8-one

CAS Registry Number

Not Available

SMILES

CC(C)[C@H](C)[C@@H](O)[C@H](O)[C@@H](C)[C@H]1CC[C@H]2[C@@H]3CC(=O)[C@H]4C[C@H](O)CC[C@]4(C)[C@H]3CC[C@@]12C

InChI Identifier

InChI=1S/C28H48O4/c1-15(2)16(3)25(31)26(32)17(4)20-7-8-21-19-14-24(30)23-13-18(29)9-11-28(23,6)22(19)10-12-27(20,21)5/h15-23,25-26,29,31-32H,7-14H2,1-6H3/t16-,17-,18+,19-,20+,21-,22-,23+,25+,26+,27-,28+/m0/s1

InChI Key

SBSXXCCMIWEPEE-DIQOEJRUSA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Arabidopsis thaliana	Plant	KNApSAcK
Camellia sinensis	Plant	KNApSAcK
Lablab purpureus	Plant	KNApSAcK
Picea sitchensis	Plant	KNApSAcK
Pinus thunbergi	Plant	KNApSAcK
Pinus thunbergii	Plant	KNApSAcK
Triticum aestivum	Plant	KNApSAcK
Typha latifolia	Plant	KNApSAcK
Zea mays	LOTUS Database	35616633
Zea mays L.	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as trihydroxy bile acids, alcohols and derivatives. These are prenol lipids structurally characterized by a bile acid or alcohol which bears three hydroxyl groups.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Bile acids, alcohols and derivatives

Direct Parent

Trihydroxy bile acids, alcohols and derivatives

Alternative Parents

Substituents

Ergostane-skeleton
Ergosterol-skeleton
Ecdysteroid
Trihydroxy bile acid, alcohol, or derivatives
23-hydroxysteroid
22-hydroxysteroid
6-oxosteroid
3-alpha-hydroxysteroid
Oxosteroid
Hydroxysteroid
3-hydroxysteroid
Cyclic alcohol
Secondary alcohol
Ketone
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.73	ALOGPS
logP	4.58	ChemAxon
logS	-4.4	ALOGPS
pKa (Strongest Acidic)	13.64	ChemAxon
pKa (Strongest Basic)	-2.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	77.76 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	127.86 m³·mol⁻¹	ChemAxon
Polarizability	53.77 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

13475124

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for 2-Deoxycastasterone (NP0050215)

MOL for NP0050215 (2-Deoxycastasterone)

3D MOL for NP0050215 (2-Deoxycastasterone)

3D SDF for NP0050215 (2-Deoxycastasterone)

3D-SDF for NP0050215 (2-Deoxycastasterone)

PDB for NP0050215 (2-Deoxycastasterone)

3D PDB for NP0050215 (2-Deoxycastasterone)

SMILES for NP0050215 (2-Deoxycastasterone)

INCHI for NP0050215 (2-Deoxycastasterone)

Structure for NP0050215 (2-Deoxycastasterone)

3D Structure for NP0050215 (2-Deoxycastasterone)