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Showing NP-Card for Δ24-25-sitosterol (NP0050006)

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Record Information
Version2.0
Created at2022-03-17 21:21:42 UTC
Updated at2022-03-17 21:21:42 UTC
NP-MRD IDNP0050006
Secondary Accession NumbersNone
Natural Product Identification
Common NameΔ24-25-sitosterol
DescriptionΔ24-25-Sitosterol belongs to the class of organic compounds known as stigmastanes and derivatives. These are sterol lipids with a structure based on the stigmastane skeleton, which consists of a cholestane moiety bearing an ethyl group at the carbon atom C24. Δ24-25-Sitosterol is an extremely weak basic (essentially neutral) compound (based on its pKa).
Structure
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MOLSDFPDBSMILESInChI

MOL for NP0050006 (Δ24-25-sitosterol)


  Mrv0541 02241212362D          

 30 33  0  0  0  0            999 V2000
   -3.3995   -0.1257    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1140   -0.5382    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1140   -1.3632    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.3995   -1.7757    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6851   -1.3632    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6851   -0.5382    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.9706   -0.1257    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9706   -1.7757    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2561   -1.3632    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2561   -0.5382    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2561    1.1118    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9706    0.6993    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1728    1.1118    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5417    0.6993    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.5417   -0.1257    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8872   -0.1257    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8872    0.6993    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8285   -1.7757    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6851    0.2868    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5417    1.5243    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8873    2.3493    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1728    1.9368    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6017    1.9368    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3162    2.3493    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0307    1.9368    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7451    2.3493    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0307    1.1118    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5417    2.3493    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3162    3.1743    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0307    3.5868    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  1  6  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  3 18  1  1  0  0  0
  4  5  1  0  0  0  0
  6  5  1  0  0  0  0
  5  8  2  0  0  0  0
  7  6  1  0  0  0  0
  6 19  1  1  0  0  0
 12  7  1  0  0  0  0
  7 10  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 15  1  0  0  0  0
 11 12  1  0  0  0  0
 11 14  1  0  0  0  0
 13 14  1  0  0  0  0
 22 13  1  0  0  0  0
 13 17  1  0  0  0  0
 14 15  1  0  0  0  0
 14 20  1  1  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 22 28  1  6  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 25 26  1  0  0  0  0
 25 27  1  0  0  0  0
 24 29  1  1  0  0  0
 29 30  1  0  0  0  0
M  END
Download

3D MOL for NP0050006 (Δ24-25-sitosterol)

Download
3D SDF for NP0050006 (Δ24-25-sitosterol)

  Mrv0541 02241212362D          

 30 33  0  0  0  0            999 V2000
   -3.3995   -0.1257    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1140   -0.5382    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1140   -1.3632    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.3995   -1.7757    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6851   -1.3632    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6851   -0.5382    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.9706   -0.1257    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9706   -1.7757    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2561   -1.3632    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2561   -0.5382    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2561    1.1118    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9706    0.6993    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1728    1.1118    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5417    0.6993    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.5417   -0.1257    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8872   -0.1257    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8872    0.6993    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8285   -1.7757    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6851    0.2868    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5417    1.5243    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8873    2.3493    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1728    1.9368    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6017    1.9368    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3162    2.3493    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0307    1.9368    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7451    2.3493    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0307    1.1118    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5417    2.3493    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3162    3.1743    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0307    3.5868    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  1  6  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  3 18  1  1  0  0  0
  4  5  1  0  0  0  0
  6  5  1  0  0  0  0
  5  8  2  0  0  0  0
  7  6  1  0  0  0  0
  6 19  1  1  0  0  0
 12  7  1  0  0  0  0
  7 10  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 15  1  0  0  0  0
 11 12  1  0  0  0  0
 11 14  1  0  0  0  0
 13 14  1  0  0  0  0
 22 13  1  0  0  0  0
 13 17  1  0  0  0  0
 14 15  1  0  0  0  0
 14 20  1  1  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 22 28  1  6  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 25 26  1  0  0  0  0
 25 27  1  0  0  0  0
 24 29  1  1  0  0  0
 29 30  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0050006

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCC(CC[C@@H](C)C1CCC2C3CC=C4C[C@@H](O)CC[C@]4(C)C3CC[C@]12C)=C(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C29H48O/c1-7-21(19(2)3)9-8-20(4)25-12-13-26-24-11-10-22-18-23(30)14-16-28(22,5)27(24)15-17-29(25,26)6/h10,20,23-27,30H,7-9,11-18H2,1-6H3/t20-,23+,24?,25?,26?,27?,28+,29-/m1/s1

> <INCHI_KEY>
YYLFLRIUDMIWTD-JUTJDYIZSA-N

> <FORMULA>
C29H48O

> <MOLECULAR_WEIGHT>
412.6908

> <EXACT_MASS>
412.370516158

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_AVERAGE_POLARIZABILITY>
52.86012681364182

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R,5S,15R)-14-[(2R)-5-ethyl-6-methylhept-5-en-2-yl]-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-7-en-5-ol

> <ALOGPS_LOGP>
6.86

> <JCHEM_LOGP>
7.395239486000001

> <ALOGPS_LOGS>
-6.19

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
18.20428950550382

> <JCHEM_PKA_STRONGEST_BASIC>
-1.3972437702926293

> <JCHEM_POLAR_SURFACE_AREA>
20.23

> <JCHEM_REFRACTIVITY>
130.34949999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.65e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2R,5S,15R)-14-[(2R)-5-ethyl-6-methylhept-5-en-2-yl]-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-7-en-5-ol

> <JCHEM_VEBER_RULE>
1

$$$$

Download
3D-SDF for NP0050006 (Δ24-25-sitosterol)
Download
PDB for NP0050006 (Δ24-25-sitosterol)
HEADER    PROTEIN                                 24-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-FEB-12         0                                  
HETATM    1  C   UNK     0      -6.346  -0.235   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -7.679  -1.005   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -7.679  -2.545   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -6.346  -3.315   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -5.012  -2.545   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -5.012  -1.005   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -3.678  -0.235   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -3.678  -3.315   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -2.345  -2.545   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -2.345  -1.005   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -2.345   2.075   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -3.678   1.305   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.323   2.075   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -1.011   1.305   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -1.011  -0.235   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.656  -0.235   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.656   1.305   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      -9.013  -3.315   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0      -5.012   0.535   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -1.011   2.845   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       1.656   4.385   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       0.323   3.615   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       2.990   3.615   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       4.324   4.385   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       5.657   3.615   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       6.991   4.385   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       5.657   2.075   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      -1.011   4.385   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       4.324   5.925   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       5.657   6.695   0.000  0.00  0.00           C+0
CONECT    1    2    6                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4   18                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6    8                                                  
CONECT    6    1    5    7   19                                             
CONECT    7    6   12   10                                                  
CONECT    8    5    9                                                       
CONECT    9    8   10                                                       
CONECT   10    7    9   15                                                  
CONECT   11   12   14                                                       
CONECT   12    7   11                                                       
CONECT   13   14   22   17                                                  
CONECT   14   11   13   15   20                                             
CONECT   15   10   14   16                                                  
CONECT   16   15   17                                                       
CONECT   17   13   16                                                       
CONECT   18    3                                                            
CONECT   19    6                                                            
CONECT   20   14                                                            
CONECT   21   22   23                                                       
CONECT   22   13   21   28                                                  
CONECT   23   21   24                                                       
CONECT   24   23   25   29                                                  
CONECT   25   24   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25                                                            
CONECT   28   22                                                            
CONECT   29   24   30                                                       
CONECT   30   29                                                            
MASTER        0    0    0    0    0    0    0    0   30    0   66    0
END

Download
3D PDB for NP0050006 (Δ24-25-sitosterol)
Download
SMILES for NP0050006 (Δ24-25-sitosterol)
CCC(CC[C@@H](C)C1CCC2C3CC=C4C[C@@H](O)CC[C@]4(C)C3CC[C@]12C)=C(C)C
Download
INCHI for NP0050006 (Δ24-25-sitosterol)
InChI=1S/C29H48O/c1-7-21(19(2)3)9-8-20(4)25-12-13-26-24-11-10-22-18-23(30)14-16-28(22,5)27(24)15-17-29(25,26)6/h10,20,23-27,30H,7-9,11-18H2,1-6H3/t20-,23+,24?,25?,26?,27?,28+,29-/m1/s1
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View in JSmol
Synonyms
ValueSource
Δ-5,24-stigmastadienolGenerator
Chemical FormulaC29H48O
Average Mass412.6908 Da
Monoisotopic Mass412.37052 Da
IUPAC Name(2R,5S,15R)-14-[(2R)-5-ethyl-6-methylhept-5-en-2-yl]-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-7-en-5-ol
Traditional Name(2R,5S,15R)-14-[(2R)-5-ethyl-6-methylhept-5-en-2-yl]-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-7-en-5-ol
CAS Registry NumberNot Available
SMILES
CCC(CC[C@@H](C)C1CCC2C3CC=C4C[C@@H](O)CC[C@]4(C)C3CC[C@]12C)=C(C)C
InChI Identifier
InChI=1S/C29H48O/c1-7-21(19(2)3)9-8-20(4)25-12-13-26-24-11-10-22-18-23(30)14-16-28(22,5)27(24)15-17-29(25,26)6/h10,20,23-27,30H,7-9,11-18H2,1-6H3/t20-,23+,24?,25?,26?,27?,28+,29-/m1/s1
InChI KeyYYLFLRIUDMIWTD-JUTJDYIZSA-N
Experimental Spectra
Not Available
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Prunus armeniacaFooDB
Chemical Taxonomy
Description Belongs to the class of organic compounds known as stigmastanes and derivatives. These are sterol lipids with a structure based on the stigmastane skeleton, which consists of a cholestane moiety bearing an ethyl group at the carbon atom C24.
KingdomOrganic compounds  
Super ClassLipids and lipid-like molecules  
ClassSteroids and steroid derivatives  
Sub ClassStigmastanes and derivatives  
Direct ParentStigmastanes and derivatives  
Alternative Parents
Substituents
  • Triterpenoid
    • 

  • Stigmastane-skeleton
    • 

  • 3-beta-hydroxysteroid
    • 

  • 3-beta-hydroxy-delta-5-steroid
    • 

  • Hydroxysteroid
    • 

  • 3-hydroxysteroid
    • 

  • 3-hydroxy-delta-5-steroid
    • 

  • Delta-5-steroid
    • 

  • Cyclic alcohol
    • 

  • Secondary alcohol
    • 

  • Organic oxygen compound
    • 

  • Hydrocarbon derivative
    • 

  • Organooxygen compound
    • 

  • Alcohol
    • 

  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP6.86ALOGPS
logP7.4ChemAxon
logS-6.2ALOGPS
pKa (Strongest Acidic)18.2ChemAxon
pKa (Strongest Basic)-1.4ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count1ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area20.23 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity130.35 m³·mol⁻¹ChemAxon
Polarizability52.86 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDFDB031307  
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound25201027  
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General ReferencesNot Available