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Record Information
Version2.0
Created at2022-03-17 21:11:32 UTC
Updated at2022-03-17 21:11:32 UTC
NP-MRD IDNP0049375
Secondary Accession NumbersNone
Natural Product Identification
Common Name6''-Malonylglycitin
Description6''-O-Malonylglycitin belongs to the class of organic compounds known as isoflavonoid o-glycosides. These are o-glycosylated derivatives of isoflavonoids, which are natural products derived from 3-phenylchromen-4-one. 6''-O-Malonylglycitin is an extremely weak basic (essentially neutral) compound (based on its pKa). Outside of the human body, 6''-O-Malonylglycitin is found, on average, in the highest concentration within a few different foods, such as soy beans, soy yogurts, and soy milks and in a lower concentration in miso, tofus, and other soy products. 6''-O-Malonylglycitin has also been detected, but not quantified in, pulses and soy sauces. This could make 6''-O-malonylglycitin a potential biomarker for the consumption of these foods. A glycosyloxyisoflavone that is glycitin substituted by a malonyl group at position 6''.
Structure
Thumb
Synonyms
ValueSource
6''-O-MalonylglycitinChEBI
Chemical FormulaC25H24O13
Average Mass532.4503 Da
Monoisotopic Mass532.12169 Da
IUPAC Name3-oxo-3-{[(2R,3S,4S,5R,6S)-3,4,5-trihydroxy-6-{[3-(4-hydroxyphenyl)-6-methoxy-4-oxo-4H-chromen-7-yl]oxy}oxan-2-yl]methoxy}propanoic acid
Traditional Namemalonylglycitin
CAS Registry Number137705-39-6
SMILES
COC1=CC2=C(OC=C(C2=O)C2=CC=C(O)C=C2)C=C1O[C@@H]1O[C@H](COC(=O)CC(O)=O)[C@@H](O)[C@H](O)[C@H]1O
InChI Identifier
InChI=1S/C25H24O13/c1-34-16-6-13-15(35-9-14(21(13)30)11-2-4-12(26)5-3-11)7-17(16)37-25-24(33)23(32)22(31)18(38-25)10-36-20(29)8-19(27)28/h2-7,9,18,22-26,31-33H,8,10H2,1H3,(H,27,28)/t18-,22-,23+,24-,25-/m1/s1
InChI KeyOWMHCYFEIJPHFB-GOZZSVHWSA-N
Experimental Spectra
Not Available
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Glycine maxFooDB
Chemical Taxonomy
Description Belongs to the class of organic compounds known as isoflavonoid o-glycosides. These are o-glycosylated derivatives of isoflavonoids, which are natural products derived from 3-phenylchromen-4-one.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassIsoflavonoids
Sub ClassIsoflavonoid O-glycosides
Direct ParentIsoflavonoid O-glycosides
Alternative Parents
Substituents
  • Isoflavonoid o-glycoside
  • Isoflavonoid-7-o-glycoside
  • Isoflavone
  • Phenolic glycoside
  • Chromone
  • Glycosyl compound
  • O-glycosyl compound
  • Benzopyran
  • 1-benzopyran
  • Anisole
  • 1-hydroxy-2-unsubstituted benzenoid
  • Alkyl aryl ether
  • Phenol
  • Pyranone
  • Dicarboxylic acid or derivatives
  • Monocyclic benzene moiety
  • 1,3-dicarbonyl compound
  • Monosaccharide
  • Benzenoid
  • Oxane
  • Pyran
  • Heteroaromatic compound
  • Secondary alcohol
  • Carboxylic acid ester
  • Carboxylic acid derivative
  • Carboxylic acid
  • Oxacycle
  • Organoheterocyclic compound
  • Acetal
  • Ether
  • Polyol
  • Alcohol
  • Carbonyl group
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP0.84ALOGPS
logP0.64ChemAxon
logS-3.2ALOGPS
pKa (Strongest Acidic)3.35ChemAxon
pKa (Strongest Basic)-3.6ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count12ChemAxon
Hydrogen Donor Count5ChemAxon
Polar Surface Area198.51 ŲChemAxon
Rotatable Bond Count9ChemAxon
Refractivity123.81 m³·mol⁻¹ChemAxon
Polarizability51.41 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDHMDB0039323
DrugBank IDNot Available
Phenol Explorer Compound ID408
FoodDB IDFDB018876
KNApSAcK IDNot Available
Chemspider ID30777345
KEGG Compound IDC16197
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound23724657
PDB IDNot Available
ChEBI ID80374
Good Scents IDNot Available
References
General References