NP-MRD: Showing NP-Card for Gibberellin GA126 (NP0049064)

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Record Information

Version

2.0

Created at

2022-03-17 21:06:34 UTC

Updated at

2022-03-17 21:06:34 UTC

NP-MRD ID

NP0049064

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Gibberellin GA126

Description

Gibberellin GA126, also known as GA126, belongs to the class of organic compounds known as c19-gibberellin 6-carboxylic acids. These are c19-gibberellins with a carboxyl group at the 6-position. Gibberellin GA126 is an extremely weak basic (essentially neutral) compound (based on its pKa). Outside of the human body, gibberellin GA126 has been detected, but not quantified in, fruits and peachs. This could make gibberellin GA126 a potential biomarker for the consumption of these foods.

Structure

MOL SDF PDB SMILES InChI


  Mrv0541 02241218002D          

 25 29  0  0  0  0            999 V2000
   -2.3430    0.0744    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2758   -0.9094    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3457   -1.1620    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3933   -1.9762    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5911    0.5334    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8050    0.1159    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1483    0.4528    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1556    1.2608    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9831    1.4000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6670   -0.7116    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1372   -0.6847    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4510   -1.4549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0555   -2.1043    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2200   -1.7283    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5606   -0.0135    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8278   -0.5236    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6517   -0.5883    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6517   -0.2307    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8827    0.0427    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2127   -0.4797    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2794    1.3036    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6422    0.8202    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9270    0.6579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6047   -0.0049    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1833    2.1043    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  1  5  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  3 10  1  0  0  0  0
  3 16  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6 10  1  0  0  0  0
  6 15  1  0  0  0  0
  7  8  1  0  0  0  0
  7 24  1  0  0  0  0
  8  9  1  0  0  0  0
  9 22  1  0  0  0  0
  9 25  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 24  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 19 22  1  0  0  0  0
 20 24  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
M  END


  Mrv0541 02241218002D          

 25 29  0  0  0  0            999 V2000
   -2.3430    0.0744    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2758   -0.9094    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3457   -1.1620    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3933   -1.9762    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5911    0.5334    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8050    0.1159    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1483    0.4528    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1556    1.2608    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9831    1.4000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6670   -0.7116    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1372   -0.6847    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4510   -1.4549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0555   -2.1043    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2200   -1.7283    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5606   -0.0135    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8278   -0.5236    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6517   -0.5883    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6517   -0.2307    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8827    0.0427    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2127   -0.4797    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2794    1.3036    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6422    0.8202    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9270    0.6579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6047   -0.0049    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1833    2.1043    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  1  5  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  3 10  1  0  0  0  0
  3 16  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6 10  1  0  0  0  0
  6 15  1  0  0  0  0
  7  8  1  0  0  0  0
  7 24  1  0  0  0  0
  8  9  1  0  0  0  0
  9 22  1  0  0  0  0
  9 25  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 24  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 19 22  1  0  0  0  0
 20 24  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0049064

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC12CC=CC3(OC1=O)C1CC(O)C4(O)CC1(CC4=C)C(C23)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C19H22O6/c1-9-7-17-8-18(9,24)11(20)6-10(17)19-5-3-4-16(2,15(23)25-19)13(19)12(17)14(21)22/h3,5,10-13,20,24H,1,4,6-8H2,2H3,(H,21,22)

> <INCHI_KEY>
KGTGZKSZLCTQNX-UHFFFAOYSA-N

> <FORMULA>
C19H22O6

> <MOLECULAR_WEIGHT>
346.3744

> <EXACT_MASS>
346.141638436

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_AVERAGE_POLARIZABILITY>
34.87725582248845

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
4,5-dihydroxy-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1⁵,⁸.0¹,¹⁰.0²,⁸]heptadec-13-ene-9-carboxylic acid

> <ALOGPS_LOGP>
0.36

> <JCHEM_LOGP>
0.3509132836666674

> <ALOGPS_LOGS>
-2.05

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
13.201355681834446

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.163485414045144

> <JCHEM_PKA_STRONGEST_BASIC>
-3.2705983094760986

> <JCHEM_POLAR_SURFACE_AREA>
104.06

> <JCHEM_REFRACTIVITY>
86.4155

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.08e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
4,5-dihydroxy-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1⁵,⁸.0¹,¹⁰.0²,⁸]heptadec-13-ene-9-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 24-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-FEB-12         0                                  
HETATM    1  C   UNK     0      -4.374   0.139   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -4.248  -1.698   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.512  -2.169   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -2.601  -3.689   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -2.970   0.996   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.503   0.216   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -0.277   0.845   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.290   2.353   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.835   2.613   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -1.245  -1.328   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.256  -1.278   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.842  -2.716   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      -0.104  -3.928   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0       2.277  -3.226   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0      -2.913  -0.025   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      -3.412  -0.977   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      -4.950  -1.098   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       4.950  -0.431   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.514   0.080   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       2.264  -0.895   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       4.255   2.433   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       3.065   1.531   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       1.730   1.228   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       1.129  -0.009   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       2.209   3.928   0.000  0.00  0.00           O+0
CONECT    1    2    5                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4   10   16                                             
CONECT    4    3                                                            
CONECT    5    1    6                                                       
CONECT    6    5    7   10   15                                             
CONECT    7    6    8   24                                                  
CONECT    8    7    9                                                       
CONECT    9    8   22   25                                                  
CONECT   10    3    6   11                                                  
CONECT   11   10   12   24                                                  
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12                                                            
CONECT   15    6   16                                                       
CONECT   16    3   15   17                                                  
CONECT   17   16                                                            
CONECT   18   19                                                            
CONECT   19   18   20   22                                                  
CONECT   20   19   24                                                       
CONECT   21   22                                                            
CONECT   22    9   19   21   23                                             
CONECT   23   22   24                                                       
CONECT   24    7   11   20   23                                             
CONECT   25    9                                                            
MASTER        0    0    0    0    0    0    0    0   25    0   58    0
END

View in JSmol

Synonyms

Value	Source
GA126	HMDB
Gibberellin a126	HMDB
4,5-Dihydroxy-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1⁵,⁸.0¹,¹⁰.0²,⁸]heptadec-13-ene-9-carboxylate	Generator

Chemical Formula

C₁₉H₂₂O₆

Average Mass

346.3744 Da

Monoisotopic Mass

346.14164 Da

IUPAC Name

4,5-dihydroxy-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1⁵,⁸.0¹,¹⁰.0²,⁸]heptadec-13-ene-9-carboxylic acid

Traditional Name

4,5-dihydroxy-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1⁵,⁸.0¹,¹⁰.0²,⁸]heptadec-13-ene-9-carboxylic acid

CAS Registry Number

357401-45-7

SMILES

CC12CC=CC3(OC1=O)C1CC(O)C4(O)CC1(CC4=C)C(C23)C(O)=O

InChI Identifier

InChI=1S/C19H22O6/c1-9-7-17-8-18(9,24)11(20)6-10(17)19-5-3-4-16(2,15(23)25-19)13(19)12(17)14(21)22/h3,5,10-13,20,24H,1,4,6-8H2,2H3,(H,21,22)

InChI Key

KGTGZKSZLCTQNX-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Prunus persica	FooDB	KNAPSACK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as c19-gibberellin 6-carboxylic acids. These are c19-gibberellins with a carboxyl group at the 6-position.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

C19-gibberellin 6-carboxylic acids

Alternative Parents

Substituents

20-norgibberellane-6-carboxylic acid
Diterpene lactone
Dicarboxylic acid or derivatives
Gamma butyrolactone
Cyclic alcohol
Tertiary alcohol
Tetrahydrofuran
1,2-diol
Carboxylic acid ester
Lactone
Secondary alcohol
Oxacycle
Carboxylic acid
Carboxylic acid derivative
Organoheterocyclic compound
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Alcohol
Organooxygen compound
Carbonyl group
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.36	ALOGPS
logP	0.35	ChemAxon
logS	-2	ALOGPS
pKa (Strongest Acidic)	4.16	ChemAxon
pKa (Strongest Basic)	-3.3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	104.06 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	86.42 m³·mol⁻¹	ChemAxon
Polarizability	34.88 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0038314

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

FDB017647

KNApSAcK ID

C00007868

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

131752333

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Gibberellin GA126 (NP0049064)

MOL for NP0049064 (Gibberellin GA126)

3D MOL for NP0049064 (Gibberellin GA126)

3D SDF for NP0049064 (Gibberellin GA126)

3D-SDF for NP0049064 (Gibberellin GA126)

PDB for NP0049064 (Gibberellin GA126)

3D PDB for NP0049064 (Gibberellin GA126)

SMILES for NP0049064 (Gibberellin GA126)

INCHI for NP0049064 (Gibberellin GA126)

Structure for NP0049064 (Gibberellin GA126)

3D Structure for NP0049064 (Gibberellin GA126)