Np mrd loader

Record Information
Version2.0
Created at2022-03-17 20:46:17 UTC
Updated at2022-03-17 20:46:17 UTC
NP-MRD IDNP0047806
Secondary Accession NumbersNone
Natural Product Identification
Common Name6-Deoxocastasterone
Description6-Deoxocastasterone belongs to the class of organic compounds known as tetrahydroxy bile acids, alcohols and derivatives. These are prenol lipids structurally characterized by a bile acid or alcohol which bears four hydroxyl groups. Thus, 6-deoxocastasterone is considered to be a sterol lipid molecule. 6-Deoxocastasterone is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral. Outside of the human body, 6-Deoxocastasterone has been detected, but not quantified in, several different foods, such as sunburst squash (pattypan squash), agaves, cardamoms, oil-seed camellia, and borages. This could make 6-deoxocastasterone a potential biomarker for the consumption of these foods. 6-Deoxocastasterone is found in Arabidopsis thaliana, Catharanthus roseus, Ornithopus sativus, Robinia pseudoacacia and Secale cereale. A 3alpha-hydroxy steroid that is castasterone which is lacking the oxo substituent at position 6.
Structure
Thumb
Synonyms
ValueSource
(22R,23R)-5alpha-Campestane-2alpha,3alpha,22,23-tetraolHMDB
(2alpha,3alpha,5alpha,22R,23R,24S)-Ergostane-2,3,22,23-tetrolHMDB
(2α,3α,5α,22R,23R,24S)-Ergostane-2,3,22,23-tetrolHMDB
6-DeoxocastasteroneHMDB
Chemical FormulaC28H50O4
Average Mass450.6942 Da
Monoisotopic Mass450.37091 Da
IUPAC Name(1S,2S,4R,5S,7S,10R,11S,14R,15S)-14-[(2S,3R,4R,5S)-3,4-dihydroxy-5,6-dimethylheptan-2-yl]-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecane-4,5-diol
Traditional Name6-deoxocastasterone
CAS Registry Number87833-54-3
SMILES
[H][C@@]1(CC[C@@]2([H])[C@]3([H])CC[C@@]4([H])C[C@H](O)[C@H](O)C[C@]4(C)[C@@]3([H])CC[C@]12C)[C@H](C)[C@@H](O)[C@H](O)[C@@H](C)C(C)C
InChI Identifier
InChI=1S/C28H50O4/c1-15(2)16(3)25(31)26(32)17(4)20-9-10-21-19-8-7-18-13-23(29)24(30)14-28(18,6)22(19)11-12-27(20,21)5/h15-26,29-32H,7-14H2,1-6H3/t16-,17-,18-,19-,20+,21-,22-,23-,24+,25+,26+,27+,28-/m0/s1
InChI KeyVXBLCLVRWCLEOX-BFYSZXNBSA-N
Experimental Spectra
Not Available
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Arabidopsis thalianaPlant
Castanea crenataFooDB
Catharanthus roseusLOTUS Database
Lablab purpureusFooDB
Ornithopus sativusLOTUS Database
Phaseolus vulgarisFooDB
Robinia pseudoacaciaLOTUS Database
Secale cerealeLOTUS Database
Zea mays L.FooDB
Chemical Taxonomy
Description Belongs to the class of organic compounds known as tetrahydroxy bile acids, alcohols and derivatives. These are prenol lipids structurally characterized by a bile acid or alcohol which bears four hydroxyl groups.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSteroids and steroid derivatives
Sub ClassBile acids, alcohols and derivatives
Direct ParentTetrahydroxy bile acids, alcohols and derivatives
Alternative Parents
Substituents
  • Ergosterol-skeleton
  • Ergostane-skeleton
  • Tetrahydroxy bile acid, alcohol, or derivatives
  • 23-hydroxysteroid
  • 22-hydroxysteroid
  • 3-hydroxysteroid
  • 2-hydroxysteroid
  • 3-alpha-hydroxysteroid
  • Hydroxysteroid
  • Cyclic alcohol
  • Secondary alcohol
  • Alcohol
  • Hydrocarbon derivative
  • Organic oxygen compound
  • Organooxygen compound
  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.7ALOGPS
logP4.42ChemAxon
logS-4.3ALOGPS
pKa (Strongest Acidic)13.46ChemAxon
pKa (Strongest Basic)-3.1ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area80.92 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity128.55 m³·mol⁻¹ChemAxon
Polarizability54.88 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDHMDB0033984
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDFDB012216
KNApSAcK IDC00000199
Chemspider ID21864867
KEGG Compound IDC15802
BioCyc IDCPD-723
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound13870433
PDB IDNot Available
ChEBI ID20712
Good Scents IDNot Available
References
General References