Np mrd loader

Record Information
Version2.0
Created at2022-03-17 19:47:19 UTC
Updated at2022-03-17 19:47:19 UTC
NP-MRD IDNP0046034
Secondary Accession NumbersNone
Natural Product Identification
Common NamePetunidin
DescriptionPetunidin, also known as petunidol or Pt, belongs to the class of organic compounds known as 3'-o-methylated flavonoids. These are flavonoids with methoxy groups attached to the C3' atom of the flavonoid backbone. Thus, petunidin is considered to be a flavonoid lipid molecule. Petunidin is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral. Outside of the human body, Petunidin is found, on average, in the highest concentration within a few different foods, such as bilberries, cowpea, and vaccinium (blueberry, cranberry, huckleberry) and in a lower concentration in java plums, black chokeberries, and wheats. Petunidin has also been detected, but not quantified in, several different foods, such as barley, apples, red wines, ryes, and triticales. This could make petunidin a potential biomarker for the consumption of these foods. Petunidin is found in Amonum subulatum, Apis cerana, Ginkgo biloba , Malva sylvestris , Passiflora quadrangularis , Pereskia aculeata, Solanum tuberosum subsp. Andigena , Valeriana spryginii and Vicia faba. Petunidin was first documented in 2005 (PMID: 16254886). An anthocyanidin cation that is flavylium bearing five hydroxy substituents at positions 3, 3', 4', 5 and 7 as well as a methoxy substituent at position 5' (PMID: 30612223) (PMID: 16277406) (PMID: 23993625) (PMID: 24363205) (PMID: 24483298) (PMID: 24506267).
Structure
Thumb
Synonyms
ValueSource
2-(3,4-Dihydroxy-5-methoxyphenyl)-3,5,7-trihydroxy-1-benzopyryliumChEBI
3,3',4',5,7-Pentahydroxy-5'-methoxyflavyliumChEBI
Petunidin chlorideChEBI
PetunidolChEBI
PtChEBI
PetunidinHMDB
Chemical FormulaC16H13O7
Average Mass317.2702 Da
Monoisotopic Mass317.06613 Da
IUPAC Name2-(3,4-dihydroxy-5-methoxyphenyl)-3,5,7-trihydroxy-1lambda4-chromen-1-ylium
Traditional Name2-(3,4-dihydroxy-5-methoxyphenyl)-3,5,7-trihydroxy-1lambda4-chromen-1-ylium
CAS Registry Number1429-30-7
SMILES
COC1=C(O)C(O)=CC(=C1)C1=[O+]C2=CC(O)=CC(O)=C2C=C1O
InChI Identifier
InChI=1S/C16H12O7/c1-22-14-3-7(2-11(19)15(14)21)16-12(20)6-9-10(18)4-8(17)5-13(9)23-16/h2-6H,1H3,(H4-,17,18,19,20,21)/p+1
InChI KeyAFOLOMGWVXKIQL-UHFFFAOYSA-O
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Actinidia chinensisFooDB
Allium cepa L.FooDB
Amelanchier alnifoliaFooDB
Amonum subulatum-
Anacardium occidentaleFooDB
Ananas comosusFooDB
Apis ceranaLOTUS Database
Apium graveolensFooDB
Arachis hypogaeaFooDB
Bertholletia excelsaFooDB
Brassica oleracea var. italicaFooDB
Brassica ruvoFooDB
Carya illinoinensisFooDB
Citrullus lanatusFooDB
Citrus paradisiFooDB
Citrus X sinensis (L.) Osbeck (pro. sp.)FooDB
CorylusFooDB
Crocus sativusFooDB
Cucumis meloFooDB
Cynara scolymusFooDB
Daucus carota ssp. sativusFooDB
Ficus caricaFooDB
Fragaria x ananassaFooDB
Ginkgo bilobaPlant
Hippophae rhamnoidesFooDB
Juglans regiaFooDB
Lactuca sativaFooDB
MacadamiaFooDB
Malus pumilaFooDB
Malva sylvestrisPlant
Musa acuminataFooDB
Musa x paradisiacaFooDB
Passiflora quadrangularisPlant
Pereskia aculeataLOTUS Database
Persea americanaFooDB
Phaseolus vulgarisFooDB
Phoenix dactyliferaFooDB
Photinia melanocarpaFooDB
Pinus edulisFooDB
Pistacia veraFooDB
Pisum sativumFooDB
Prunus aviumFooDB
Prunus avium L.FooDB
Prunus domesticaFooDB
Prunus dulcisFooDB
Prunus persicaFooDB
Prunus persica var. nucipersicaFooDB
Punica granatumFooDB
Pyrus communisFooDB
Raphanus sativusFooDB
Ribes nigrumFooDB
Sambucus nigra L.FooDB
Solanum lycopersicumFooDB
Solanum tuberosumFooDB
Solanum tuberosum subsp. AndigenaPlant
Syzygium cuminiFooDB
TriticumFooDB
VacciniumFooDB
Vaccinium corymbosumFooDB
Vaccinium macrocarponFooDB
Vaccinium myrtillusFooDB
Valeriana spryginiiPlant
Vicia fabaLOTUS Database
Vigna unguiculataFooDB
VitisFooDB
Vitis vinifera L.FooDB
Chemical Taxonomy
Description Belongs to the class of organic compounds known as 3'-o-methylated flavonoids. These are flavonoids with methoxy groups attached to the C3' atom of the flavonoid backbone.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassFlavonoids
Sub ClassO-methylated flavonoids
Direct Parent3'-O-methylated flavonoids
Alternative Parents
Substituents
  • 3p-methoxyflavonoid-skeleton
  • 3'-hydroxyflavonoid
  • 3-hydroxyflavonoid
  • 4'-hydroxyflavonoid
  • 5-hydroxyflavonoid
  • 7-hydroxyflavonoid
  • Hydroxyflavonoid
  • Anthocyanidin
  • Benzopyran
  • Methoxyphenol
  • 1-benzopyran
  • Phenoxy compound
  • Anisole
  • Methoxybenzene
  • Catechol
  • Phenol ether
  • 1-hydroxy-2-unsubstituted benzenoid
  • 1-hydroxy-4-unsubstituted benzenoid
  • Alkyl aryl ether
  • Phenol
  • Benzenoid
  • Monocyclic benzene moiety
  • Heteroaromatic compound
  • Organoheterocyclic compound
  • Ether
  • Oxacycle
  • Polyol
  • Organic oxygen compound
  • Organooxygen compound
  • Hydrocarbon derivative
  • Organic cation
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.43ALOGPS
logP2.8ChemAxon
logS-3.9ALOGPS
pKa (Strongest Acidic)5.99ChemAxon
pKa (Strongest Basic)-4.9ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count5ChemAxon
Polar Surface Area123.52 ŲChemAxon
Rotatable Bond Count2ChemAxon
Refractivity90.58 m³·mol⁻¹ChemAxon
Polarizability31.1 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDHMDB0003173
DrugBank IDNot Available
Phenol Explorer Compound ID30
FoodDB IDFDB002755
KNApSAcK IDNot Available
Chemspider ID390371
KEGG Compound IDC08727
BioCyc IDCPD-15003
BiGG IDNot Available
Wikipedia LinkPetunidin
METLIN IDNot Available
PubChem Compound441774
PDB IDNot Available
ChEBI ID75318
Good Scents IDNot Available
References
General References
  1. Djoumbou-Feunang Y, Fiamoncini J, Gil-de-la-Fuente A, Greiner R, Manach C, Wishart DS: BioTransformer: a comprehensive computational tool for small molecule metabolism prediction and metabolite identification. J Cheminform. 2019 Jan 5;11(1):2. doi: 10.1186/s13321-018-0324-5. [PubMed:30612223 ]
  2. Garcia-Alonso M, Rimbach G, Sasai M, Nakahara M, Matsugo S, Uchida Y, Rivas-Gonzalo JC, De Pascual-Teresa S: Electron spin resonance spectroscopy studies on the free radical scavenging activity of wine anthocyanins and pyranoanthocyanins. Mol Nutr Food Res. 2005 Dec;49(12):1112-9. doi: 10.1002/mnfr.200500100. [PubMed:16254886 ]
  3. Lo Piero AR, Puglisi I, Rapisarda P, Petrone G: Anthocyanins accumulation and related gene expression in red orange fruit induced by low temperature storage. J Agric Food Chem. 2005 Nov 16;53(23):9083-8. doi: 10.1021/jf051609s. [PubMed:16277406 ]
  4. Rustioni L, Di Meo F, Guillaume M, Failla O, Trouillas P: Tuning color variation in grape anthocyanins at the molecular scale. Food Chem. 2013 Dec 15;141(4):4349-57. doi: 10.1016/j.foodchem.2013.07.006. Epub 2013 Jul 9. [PubMed:23993625 ]
  5. Son JE, Lee E, Jung SK, Kim JE, Oak MH, Lee KW, Lee HJ: Anthocyanidins, novel FAK inhibitors, attenuate PDGF-BB-induced aortic smooth muscle cell migration and neointima formation. Cardiovasc Res. 2014 Mar 1;101(3):503-12. doi: 10.1093/cvr/cvt337. Epub 2013 Dec 20. [PubMed:24363205 ]
  6. Lee S, Jung ES, Do SG, Jung GY, Song G, Song JM, Lee CH: Correlation between species-specific metabolite profiles and bioactivities of blueberries (Vaccinium spp.). J Agric Food Chem. 2014 Mar 5;62(9):2126-33. doi: 10.1021/jf405272b. Epub 2014 Feb 24. [PubMed:24483298 ]
  7. Oszmianski J, Kolniak-Ostek J, Wojdylo A: Characterization of phenolic compounds and antioxidant activity of Solanum scabrum and Solanum burbankii berries. J Agric Food Chem. 2014 Feb 19;62(7):1512-9. doi: 10.1021/jf4045233. Epub 2014 Feb 7. [PubMed:24506267 ]
  8. Kitahara K, Murai Y, Bang SW, Kitajima J, Iwashina T, Kaneko Y: Anthocyanins from the flowers of Nagai line of Japanese garden Iris (Iris ensata). Nat Prod Commun. 2014 Feb;9(2):201-4. [PubMed:24689289 ]