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Record Information
Version2.0
Created at2022-03-17 19:32:30 UTC
Updated at2022-03-17 19:32:30 UTC
NP-MRD IDNP0045599
Secondary Accession NumbersNone
Natural Product Identification
Common NameLycopsamine
Description Lycopsamine is found in Ageratina conyzoides, Ageratum conyzoides, Ageratum houstonianum, Amsinckia hispida, Amsinckia intermedia, Amsinckia menziesii, Amsinckia vernicosa, Anchusa arvensis , Anchusa caerulea, Anchusa officinalis , Arnebia decumbens, Brickellia grandiflora, Chromolaena odorata, Critonia morifolia, Critonia portoricensis, Cynoglossum amabile, Cynoglossum creticum, Cynoglossum furcatum, Cynoglossum germanicum, Cynoglossum officinale , Cynoglossum pictum Ait., Danaus plexippus, Echium horridum, Echium humile, Echium vulgare, Eupatorium altissimum, Eupatorium cannabinum , Eupatorium cannabium, Eupatorium chinense, Eupatorium compositifolium, Eupatorium fortunei, Eupatorium maculatum, Eupatorium portoricense Urban, Eupatorium serotinum, Heliotropium amplexicaule, Heliotropium arborescens, Heliotropium circinatum, Heliotropium indicum , Heliotropium megalanthum, Heliotropium steudneri, Heliotropium supinum, Heliotropium transalpinum, Lappula myosotis, Liatris punctata, Lindelofia angustifolia, Lindelofia stylosa, Lithospermum canescens, Lithospermum canesens, Mertensia bakeri, Tournefortia argentea, Messerschmidia sibirica, Neatostema apulum, Oreocarya virgata, Paracaryum rugulosum, Paracynoglossum imeretinum, Parsonsia eucalyptophylla, Parsonsia straminea, Praxelis clematidea, Pulmonaria obscura, Rindera austroechinata, Rindera baldschuanica, Solenanthus circinatus, Symphytum x uplandicum, Symphytum asperum, Symphytum bohemium, Symphytum caucasicum, Symphytum caucasium, Symphytum grandiflorum, Symphytum ibericum, Symphytum officinale , Symphytum officinalis, Symphytum peregrinum, Symphytum tanaiense, Symphytum tuberosum, Symphytum uplandicum and Trichodesma africanum.
Structure
Thumb
Synonyms
ValueSource
9-ViridiflorylretronecineKegg
EchinatineMeSH
Indicine, (1S-(1alpha,7(2R*,3S*),7aalpha))-isomerMeSH
RinderineMeSH
IndicineMeSH
Indicine, (1R-(1alpha,7(2S*,3S*),7abeta))-isomerMeSH
Indicine, (1R-(1alpha,7(2S*,3R*),7abeta))-isomerMeSH
Indicine, (1S-(1alpha,7(2R*,3R*),7aalpha))-isomerMeSH
Chemical FormulaC15H25NO5
Average Mass299.3627 Da
Monoisotopic Mass299.17327 Da
IUPAC Name[(1R,7aR)-1-hydroxy-2,3,5,7a-tetrahydro-1H-pyrrolizin-7-yl]methyl (2S)-2-hydroxy-2-[(1S)-1-hydroxyethyl]-3-methylbutanoate
Traditional Namelycopsamine
CAS Registry Number10285-07-1
SMILES
[H][C@@](C)(O)[C@@](O)(C(C)C)C(=O)OCC1=CCN2CC[C@@]([H])(O)[C@@]12[H]
InChI Identifier
InChI=1S/C15H25NO5/c1-9(2)15(20,10(3)17)14(19)21-8-11-4-6-16-7-5-12(18)13(11)16/h4,9-10,12-13,17-18,20H,5-8H2,1-3H3/t10-,12+,13+,15-/m0/s1
InChI KeySFVVQRJOGUKCEG-ZGFBFQLVSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Ageratina conyzoidesPlant
Ageratum conyzoidesLOTUS Database
Ageratum houstonianumLOTUS Database
Amsinckia hispidaPlant
Amsinckia intermediaPlant
Amsinckia menziesiiLOTUS Database
Amsinckia vernicosaLOTUS Database
Anchusa arvensisPlant
Anchusa caeruleaPlant
Anchusa officinalisPlant
Arnebia decumbensPlant
Borago officinalisFooDB
Brickellia grandifloraLOTUS Database
Chromolaena odorataLOTUS Database
Critonia morifoliaPlant
Critonia portoricensisLOTUS Database
Cynoglossum amabilePlant
Cynoglossum creticumLOTUS Database
Cynoglossum furcatumPlant
Cynoglossum germanicumLOTUS Database
Cynoglossum officinalePlant
Cynoglossum pictum Ait.Plant
Danaus plexippusLOTUS Database
Echium horridumLOTUS Database
Echium humileLOTUS Database
Echium vulgareLOTUS Database
Eupatorium altissimumPlant
Eupatorium cannabinumPlant
Eupatorium cannabiumPlant
Eupatorium chinenseLOTUS Database
Eupatorium compositifoliumPlant
Eupatorium fortuneiLOTUS Database
Eupatorium maculatumPlant
Eupatorium portoricense UrbanPlant
Eupatorium serotinumLOTUS Database
Heliotropium amplexicaulePlant
Heliotropium arborescensPlant
Heliotropium circinatumPlant
Heliotropium indicumPlant
Heliotropium megalanthumPlant
Heliotropium steudneriPlant
Heliotropium supinumPlant
Heliotropium transalpinumPlant
Lappula myosotisLOTUS Database
Liatris punctataLOTUS Database
Lindelofia angustifoliaPlant
Lindelofia stylosaPlant
Lithospermum canescensLOTUS Database
Lithospermum canesensPlant
Mertensia bakeriLOTUS Database
Messerschmidia argenteaLOTUS Database
Messerschmidia sibiricaPlant
Neatostema apulumLOTUS Database
Oreocarya virgataLOTUS Database
Paracaryum rugulosumLOTUS Database
Paracynoglossum imeretinum-
Parsonsia eucalyptophyllaPlant
Parsonsia stramineaPlant
Praxelis clematideaLOTUS Database
Pulmonaria obscuraLOTUS Database
Rindera austroechinataPlant
Rindera baldschuanicaPlant
Solenanthus circinatusPlant
Symphytum x uplandicumPlant
Symphytum asperumPlant
Symphytum bohemiumPlant
Symphytum caucasicumPlant
Symphytum caucasiumPlant
Symphytum grandiflorumPlant
Symphytum ibericumPlant
Symphytum officinalePlant
Symphytum officinalisPlant
Symphytum peregrinumPlant
Symphytum tanaiensePlant
Symphytum tuberosumPlant
Symphytum uplandicumPlant
Trichodesma africanaLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as alkaloids and derivatives. These are naturally occurring chemical compounds that contain mostly basic nitrogen atoms. This group also includes some related compounds with neutral and even weakly acidic properties. Also some synthetic compounds of similar structure are attributed to alkaloids. In addition to carbon, hydrogen and nitrogen, alkaloids may also contain oxygen, sulfur and more rarely other elements such as chlorine, bromine, and phosphorus.
KingdomOrganic compounds
Super ClassAlkaloids and derivatives
ClassNot Available
Sub ClassNot Available
Direct ParentAlkaloids and derivatives
Alternative Parents
Substituents
  • Alkaloid or derivatives
  • Pyrrolizine
  • Beta-hydroxy acid
  • Fatty acid ester
  • Hydroxy acid
  • N-alkylpyrrolidine
  • Fatty acyl
  • Tertiary alcohol
  • Pyrroline
  • Pyrrolidine
  • Amino acid or derivatives
  • Tertiary aliphatic amine
  • Tertiary amine
  • Secondary alcohol
  • Carboxylic acid ester
  • Azacycle
  • Organoheterocyclic compound
  • Carboxylic acid derivative
  • Monocarboxylic acid or derivatives
  • Hydrocarbon derivative
  • Organonitrogen compound
  • Alcohol
  • Organic oxygen compound
  • Organooxygen compound
  • Organopnictogen compound
  • Carbonyl group
  • Organic nitrogen compound
  • Organic oxide
  • Amine
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP0.41ALOGPS
logP-0.29ChemAxon
logS-0.77ALOGPS
pKa (Strongest Acidic)11.34ChemAxon
pKa (Strongest Basic)7.82ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area90.23 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity77.94 m³·mol⁻¹ChemAxon
Polarizability31.75 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDFDB001505
KNApSAcK IDC00002099
Chemspider IDNot Available
KEGG Compound IDC10347
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound107938
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General ReferencesNot Available