NP-MRD: Showing NP-Card for Alloaromadendrene (NP0045117)

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Record Information

Version

2.0

Created at

2022-03-10 18:58:16 UTC

Updated at

2022-03-10 22:17:54 UTC

NP-MRD ID

NP0045117

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Alloaromadendrene

Description

Alloaromadendrene or Aromadendrene belongs to the class of organic compounds known as 5,10-cycloaromadendrane sesquiterpenoids. These are aromadendrane sesquiterpenoids that arise from the C5-C10 cyclization of the aromadendrane skeleton. Aromadendrene is formally classified as a polycyclic hydrocarbon although it is biochemically a sesquiterpene. Sesquiterpenes are terpenes that contain 15 carbon atoms and are comprised of three isoprene units. The biosynthesis of sesquiterpenes is known to occur mainly through the mevalonic acid pathway (MVA), in the cytosol. However, recent studies have found evidence of pathway crosstalk with the methyl-erythritol-phosphate (MEP) pathway in the cytosol. Farnesyl diphosphate (FPP) is a key intermediate in the biosynthesis of cyclic sesquiterpenes. FPP undergoes several cyclization reactions to yield a diverse number of cyclic arrangements. Aromadendrene is a neutral, hydrophobic molecule that is largely insoluble in water. It exists as a colorless, clear liquid. Aromadendrene has a woody, musty odor. It is found in a number of plants and spices including allspice, anise fruit, cloves, eucalyptus, ginger, guava, marjoram, oregano, rosemary, sage, thyme and the essential oil of indigenous cinnamon. Alloaromadendrene is also found in cannabis plants, but only in trace amounts (PMID: 6991645 ). Alloaromadendrene appears to exhibit antioxidant activity and has been shown to delay aging in C. Elegans (PMID: 24918691 ).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 39 41  0  0  0  0  0  0  0  0999 V2000
    1.1227    3.0799    0.4372 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3294    2.2137   -0.1562 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1447    2.5603   -0.1716 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9544    1.2732   -0.3866 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7042    0.3719    0.7425 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.5001   -0.3759    0.9278 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7643   -0.0754    0.3058 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8726    0.9844   -0.7394 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.2990    0.9557   -1.1304 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8070   -0.4401   -0.7272 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5232   -1.2029   -0.3603 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.9099   -2.2729    0.6370 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6555   -1.0944    0.3625 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.5721   -1.9373    1.2618 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7906   -1.5348   -1.0370 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7374    4.0099    0.8815 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1893    2.9621    0.5475 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4474    2.9298    0.8298 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3329    3.3039   -0.9443 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0097    1.5797   -0.4105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7364    0.8499   -1.3905 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3036    0.6824    1.6561 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3388   -0.7374    2.0092 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4993    0.3001    1.0900 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2913    0.7736   -1.6597 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4318    0.9488   -2.2602 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9464    1.7387   -0.7527 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3681   -0.2748    0.2216 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3809   -0.9321   -1.5053 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0412   -1.6178   -1.2412 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6767   -2.9123    0.2024 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3168   -1.7846    1.5392 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0040   -2.8307    0.9308 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2951   -1.6794    2.3046 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4345   -3.0113    1.0827 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6337   -1.6093    1.1286 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2189   -1.0711   -1.8128 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8764   -1.4848   -1.3463 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5621   -2.6385   -1.0664 H   0  0  0  0  0  0  0  0  0  0  0  0
 12 11  1  0
 11 10  1  0
 10  9  1  0
  9  8  1  0
  8  7  1  0
  7  6  1  0
  6  5  1  0
  5  4  1  0
  4  3  1  0
  3  2  1  0
  2  1  2  3
  5 13  1  0
 13 14  1  1
 13 15  1  0
  7 11  1  0
 13  6  1  0
  2  8  1  0
 12 31  1  0
 12 32  1  0
 12 33  1  0
 11 30  1  6
 10 28  1  0
 10 29  1  0
  9 26  1  0
  9 27  1  0
  8 25  1  6
  7 24  1  1
  6 23  1  1
  5 22  1  1
  4 20  1  0
  4 21  1  0
  3 18  1  0
  3 19  1  0
  1 16  1  0
  1 17  1  0
 14 34  1  0
 14 35  1  0
 14 36  1  0
 15 37  1  0
 15 38  1  0
 15 39  1  0
M  END


  Mrv1652303192001433D          

 15 17  0  0  0  0            999 V2000
   -2.0345    2.7232    0.2875 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6241   -2.6092   -0.8511 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4564    0.1199    1.3581 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3355   -1.2449   -0.5274 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3219   -1.3753    1.1375 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0993    2.3549   -0.9752 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5114    0.0940    0.8771 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2633    1.8249   -0.5633 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0824    1.8678    0.0284 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1524   -1.7527    0.2982 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0454    0.5455    0.7115 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5843    0.4741   -1.0581 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.5329   -0.4398   -0.2121 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8425   -0.6795   -0.5653 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1195   -0.4623    0.0213 C   0  0  2  0  0  0  0  0  0  0  0  0
  1  9  2  0  0  0  0
 10  2  1  6  0  0  0
  3 15  1  0  0  0  0
  4 15  1  0  0  0  0
  5  7  1  0  0  0  0
  5 10  1  0  0  0  0
  6  8  1  0  0  0  0
  6  9  1  0  0  0  0
 11  7  1  6  0  0  0
 12  8  1  1  0  0  0
  9 11  1  0  0  0  0
 13 10  1  1  0  0  0
 11 13  1  0  0  0  0
 12 14  1  0  0  0  0
 12 15  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0045117

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H]1CC[C@H]2[C@H]1[C@H]1[C@@H](CCC2=C)C1(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C15H24/c1-9-6-8-12-14(15(12,3)4)13-10(2)5-7-11(9)13/h10-14H,1,5-8H2,2-4H3/t10-,11-,12-,13+,14-/m1/s1

> <INCHI_KEY>
ITYNGVSTWVVPIC-XGFWRYKXSA-N

> <FORMULA>
C15H24

> <MOLECULAR_WEIGHT>
204.357

> <EXACT_MASS>
204.187800773

> <JCHEM_ACCEPTOR_COUNT>
0

> <JCHEM_ATOM_COUNT>
39

> <JCHEM_AVERAGE_POLARIZABILITY>
25.95677247725948

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1aR,4aS,7R,7aS,7bS)-1,1,7-trimethyl-4-methylidene-decahydro-1H-cyclopropa[e]azulene

> <ALOGPS_LOGP>
3.70

> <JCHEM_LOGP>
4.1460638329999995

> <ALOGPS_LOGS>
-4.94

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_POLAR_SURFACE_AREA>
0.0

> <JCHEM_REFRACTIVITY>
64.6954

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.37e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1aR,4aS,7R,7aS,7bS)-1,1,7-trimethyl-4-methylidene-octahydro-1aH-cyclopropa[e]azulene

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 19-MAR-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   19-MAR-20         0                                  
HETATM    1  C   UNK     0      -2.034   2.723   0.288  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.624  -2.609  -0.851  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.456   0.120   1.358  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.336  -1.245  -0.527  0.00  0.00           C+0
HETATM    5  C   UNK     0      -2.322  -1.375   1.137  0.00  0.00           C+0
HETATM    6  C   UNK     0      -0.099   2.355  -0.975  0.00  0.00           C+0
HETATM    7  C   UNK     0      -2.511   0.094   0.877  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.263   1.825  -0.563  0.00  0.00           C+0
HETATM    9  C   UNK     0      -1.082   1.868   0.028  0.00  0.00           C+0
HETATM   10  C   UNK     0      -1.152  -1.753   0.298  0.00  0.00           C+0
HETATM   11  C   UNK     0      -1.045   0.546   0.712  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.584   0.474  -1.058  0.00  0.00           C+0
HETATM   13  C   UNK     0      -0.533  -0.440  -0.212  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.843  -0.680  -0.565  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.119  -0.462   0.021  0.00  0.00           C+0
CONECT    1    9                                                            
CONECT    2   10                                                            
CONECT    3   15                                                            
CONECT    4   15                                                            
CONECT    5    7   10                                                       
CONECT    6    8    9                                                       
CONECT    7    5   11                                                       
CONECT    8    6   12                                                       
CONECT    9    1    6   11                                                  
CONECT   10    2    5   13                                                  
CONECT   11    7    9   13                                                  
CONECT   12    8   14   15                                                  
CONECT   13   10   11   14                                                  
CONECT   14   12   13   15                                                  
CONECT   15    3    4   12   14                                             
MASTER        0    0    0    0    0    0    0    0   15    0   34    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₂₄

Average Mass

204.3570 Da

Monoisotopic Mass

204.18780 Da

IUPAC Name

(1aR,4aS,7R,7aS,7bS)-1,1,7-trimethyl-4-methylidene-decahydro-1H-cyclopropa[e]azulene

Traditional Name

(1aR,4aS,7R,7aS,7bS)-1,1,7-trimethyl-4-methylidene-octahydro-1aH-cyclopropa[e]azulene

CAS Registry Number

25246-27-9

SMILES

C[C@@H]1CC[C@H]2[C@H]1[C@H]1[C@@H](CCC2=C)C1(C)C

InChI Identifier

InChI=1S/C15H24/c1-9-6-8-12-14(15(12,3)4)13-10(2)5-7-11(9)13/h10-14H,1,5-8H2,2-4H3/t10-,11-,12-,13+,14-/m1/s1

InChI Key

ITYNGVSTWVVPIC-XGFWRYKXSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Cannabis sativa	NULL	Not Available
Carthamus tinctorius	FooDB	Dr. Duke's Phytochemical and Ethnobotanical Databases
Cistus incanus	LOTUS Database	35616633
Citrus sinensis	LOTUS Database	35616633
Cyperus rotundus	LOTUS Database	35616633
Hyssopus officinalis L.	FooDB	Dr. Duke's Phytochemical and Ethnobotanical Databases
Illicium verum	FooDB	Dr. Duke's Phytochemical and Ethnobotanical Databases
Laurus nobilis L.	FooDB	Dr. Duke's Phytochemical and Ethnobotanical Databases
Lepidozia fauriana	LOTUS Database	35616633
Marsupella emarginata	LOTUS Database	35616633
Melaleuca leucadendra	LOTUS Database	35616633
Mentha aquatica	FooDB	Dr. Duke's Phytochemical and Ethnobotanical Databases
Mentha spicata	FooDB	Dr. Duke's Phytochemical and Ethnobotanical Databases
Origanum majorana	FooDB	Dr. Duke's Phytochemical and Ethnobotanical Databases
Origanum vulgare	FooDB	Dr. Duke's Phytochemical and Ethnobotanical Databases
Persicaria minor	LOTUS Database	35616633
Pimenta dioica	FooDB	Dr. Duke's Phytochemical and Ethnobotanical Databases
Salvia officinalis	FooDB	Dr. Duke's Phytochemical and Ethnobotanical Databases
Salvia rosmarinus	FooDB	Dr. Duke's Phytochemical and Ethnobotanical Databases
Sarcophyton glaucum	LOTUS Database	35616633
Syzygium aromaticum	FooDB	Dr. Duke's Phytochemical and Ethnobotanical Databases
Trilophozia quinquedentata	LOTUS Database	35616633
Valeriana officinalis	LOTUS Database	35616633
Zingiber officinale	FooDB	Dr. Duke's Phytochemical and Ethnobotanical Databases

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 5,10-cycloaromadendrane sesquiterpenoids. These are aromadendrane sesquiterpenoids that arise from the C5-C10 cyclization of the aromadendrane skeleton.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

5,10-cycloaromadendrane sesquiterpenoids

Alternative Parents

Substituents

5,10-cycloaromadendrane sesquiterpenoid
Guaiane sesquiterpenoid
Branched unsaturated hydrocarbon
Polycyclic hydrocarbon
Cyclic olefin
Unsaturated aliphatic hydrocarbon
Unsaturated hydrocarbon
Olefin
Hydrocarbon
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.7	ALOGPS
logP	4.15	ChemAxon
logS	-4.9	ALOGPS
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	0	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	0 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	64.7 m³·mol⁻¹	ChemAxon
Polarizability	25.96 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

12305247

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Yu CW, Li WH, Hsu FL, Yen PL, Chang ST, Liao VH: Essential oil alloaromadendrene from mixed-type Cinnamomum osmophloeum leaves prolongs the lifespan in Caenorhabditis elegans. J Agric Food Chem. 2014 Jul 2;62(26):6159-65. doi: 10.1021/jf500417y. Epub 2014 Jun 23. [PubMed:24918691 ]

Showing NP-Card for Alloaromadendrene (NP0045117)

MOL for NP0045117 (Alloaromadendrene)

3D MOL for NP0045117 (Alloaromadendrene)

3D SDF for NP0045117 (Alloaromadendrene)

3D-SDF for NP0045117 (Alloaromadendrene)

PDB for NP0045117 (Alloaromadendrene)

3D PDB for NP0045117 (Alloaromadendrene)

SMILES for NP0045117 (Alloaromadendrene)

INCHI for NP0045117 (Alloaromadendrene)

Structure for NP0045117 (Alloaromadendrene)

3D Structure for NP0045117 (Alloaromadendrene)