Showing NP-Card for (+)-cis-Sabinol (NP0044931)

Jump To Section:
IdentificationSpectraBioTaxonomyChemoTaxonomyPhysical propertiesLinksReferencesXML
Show more...Show more...
Record Information
Version2.0
Created at2022-03-10 18:51:20 UTC
Updated at2022-03-10 22:16:24 UTC
NP-MRD IDNP0044931
Secondary Accession NumbersNone
Natural Product Identification
Common Name(+)-cis-Sabinol
Description(+)-Cis-Sabinol belongs to the class of organic compounds known as bicyclic monoterpenoids. These are monoterpenoids containing exactly 2 rings, which are fused to each other. Thus, (+)-cis-sabinol is an isoprenoid lipid molecule. Monoterpenoids are terpenes that contain 10 carbon atoms and are comprised of two isoprene units. The biosynthesis of monoterpenes is known to occur mainly through the methyl-eritritol-phosphate (MEP) pathway in the plastids (PMID: 23746261 ). Geranyl diphosphate (GPP) is a key intermediate in the biosynthesis of cyclic monoterpenes. GPP undergoes several cyclization reactions to yield a diverse number of cyclic arrangements. (+)-Cis-Sabinol is very hydrophobic, practically insoluble in water, and relatively neutral. (+)-Cis-Sabinol is found in cannabis plants (PMID:6991645 ) Artemisia annuaand (https://Doi.Org/10.1007/S11418-006-0112-9) and in herbal plant Dendranthema indicum (PMID: 29510531 ).
Structure
Thumb
MOL3D MOLSDFPDBSMILESInChI

MOL for NP0044931 ((+)-cis-Sabinol)

  Mrv1652303202019002D          

 11 12  0  0  1  0            999 V2000
    0.7062   -2.1876    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2213   -1.5201    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5992   -1.6064    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5569   -0.7665    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1576   -0.3540    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5569    0.0585    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3415    0.3135    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5964    1.0981    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8264   -0.3540    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3415   -1.0214    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6514   -0.3540    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  4  2  1  1  0  0  0
  4  5  1  0  0  0  0
  6  5  1  6  0  0  0
  4  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
  4 10  1  0  0  0  0
  9 11  1  6  0  0  0
M  END
Download

3D MOL for NP0044931 ((+)-cis-Sabinol)

     RDKit          3D

 27 28  0  0  0  0  0  0  0  0999 V2000
   -3.0027   -0.9486   -1.1604 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9340   -0.6685   -0.4313 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5015   -0.6764   -0.8836 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0011    0.6823   -1.2736 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2407    0.0949    0.1154 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.6732   -0.0940    0.4420 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4137   -1.0136   -0.4816 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3348    1.2819    0.3245 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6833    0.4857    1.2276 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9595   -0.2883    0.9948 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.0277    0.5453    1.3173 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9737   -0.9040   -0.7074 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9368   -1.2252   -2.2117 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1157   -1.5779   -1.3781 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6916    1.5425   -1.3047 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8223    0.6898   -1.9869 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8428   -0.4155    1.4912 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8348   -1.8595   -0.8505 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8569   -0.4852   -1.3510 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2941   -1.4417    0.0750 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6711    1.9830    0.8515 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3693    1.2652    0.6778 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2669    1.5445   -0.7590 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8429    1.5671    1.3281 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2444    0.1179    2.1764 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9681   -1.2342    1.6058 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7378    1.0323    2.1525 H   0  0  0  0  0  0  0  0  0  0  0  0
  7  6  1  0
  6  8  1  0
  5  6  1  0
  5  4  1  6
  4  3  1  0
  3  2  1  0
  2  1  2  3
  2 10  1  0
 10 11  1  0
 10  9  1  0
  3  5  1  0
  9  5  1  0
  7 18  1  0
  7 19  1  0
  7 20  1  0
  6 17  1  1
  8 21  1  0
  8 22  1  0
  8 23  1  0
  4 15  1  0
  4 16  1  0
  3 14  1  6
  1 12  1  0
  1 13  1  0
 10 26  1  1
 11 27  1  0
  9 24  1  0
  9 25  1  0
M  END
Download

3D SDF for NP0044931 ((+)-cis-Sabinol)

  Mrv1652303202019002D          

 11 12  0  0  1  0            999 V2000
    0.7062   -2.1876    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2213   -1.5201    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5992   -1.6064    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5569   -0.7665    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1576   -0.3540    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5569    0.0585    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3415    0.3135    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5964    1.0981    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8264   -0.3540    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3415   -1.0214    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6514   -0.3540    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  4  2  1  1  0  0  0
  4  5  1  0  0  0  0
  6  5  1  6  0  0  0
  4  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
  4 10  1  0  0  0  0
  9 11  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0044931

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)[C@@]12C[C@@H]1C(=C)[C@H](O)C2

> <INCHI_IDENTIFIER>
InChI=1S/C10H16O/c1-6(2)10-4-8(10)7(3)9(11)5-10/h6,8-9,11H,3-5H2,1-2H3/t8-,9-,10+/m1/s1

> <INCHI_KEY>
MDFQXBNVOAKNAY-BBBLOLIVSA-N

> <FORMULA>
C10H16O

> <MOLECULAR_WEIGHT>
152.2334

> <EXACT_MASS>
152.120115134

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
27

> <JCHEM_AVERAGE_POLARIZABILITY>
18.097466263373125

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,3R,5S)-4-methylidene-1-(propan-2-yl)bicyclo[3.1.0]hexan-3-ol

> <ALOGPS_LOGP>
1.90

> <JCHEM_LOGP>
1.628784049666666

> <ALOGPS_LOGS>
-1.95

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
17.87382847462683

> <JCHEM_PKA_STRONGEST_BASIC>
-1.5417874251982244

> <JCHEM_POLAR_SURFACE_AREA>
20.23

> <JCHEM_REFRACTIVITY>
45.1653

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.73e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(+)-sabinol

> <JCHEM_VEBER_RULE>
1

$$$$
Download

3D-SDF for NP0044931 ((+)-cis-Sabinol)

Download
PDB for NP0044931 ((+)-cis-Sabinol)
HEADER    PROTEIN                                 20-MAR-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-MAR-20         0                                  
HETATM    1  C   UNK     0       1.318  -4.084   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.413  -2.838   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.119  -2.999   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.040  -1.431   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -0.294  -0.661   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.040   0.109   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.504   0.585   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.980   2.050   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       3.409  -0.661   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.504  -1.907   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       4.949  -0.661   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5    6   10                                             
CONECT    5    4    6                                                       
CONECT    6    5    4    7                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   11                                                  
CONECT   10    9    4                                                       
CONECT   11    9                                                            
MASTER        0    0    0    0    0    0    0    0   11    0   24    0
END

Download
3D PDB for NP0044931 ((+)-cis-Sabinol)
Download
SMILES for NP0044931 ((+)-cis-Sabinol)
CC(C)[C@@]12C[C@@H]1C(=C)[C@H](O)C2
Download
INCHI for NP0044931 ((+)-cis-Sabinol)
InChI=1S/C10H16O/c1-6(2)10-4-8(10)7(3)9(11)5-10/h6,8-9,11H,3-5H2,1-2H3/t8-,9-,10+/m1/s1
Download
View in JSmol
Synonyms
ValueSource
(1S,3R,5S)-SabinolChEBI
SabinolChEBI
Sabinol, (1alpha,3alpha,5alpha)-isomerMeSH
Sabinol, (1alpha,3beta,5alpha)-isomerMeSH
Chemical FormulaC10H16O
Average Mass152.2334 Da
Monoisotopic Mass152.12012 Da
IUPAC Name(1S,3R,5S)-4-methylidene-1-(propan-2-yl)bicyclo[3.1.0]hexan-3-ol
Traditional Name(+)-sabinol
CAS Registry Number471-16-9
SMILES
CC(C)[C@@]12C[C@@H]1C(=C)[C@H](O)C2
InChI Identifier
InChI=1S/C10H16O/c1-6(2)10-4-8(10)7(3)9(11)5-10/h6,8-9,11H,3-5H2,1-2H3/t8-,9-,10+/m1/s1
InChI KeyMDFQXBNVOAKNAY-BBBLOLIVSA-N
Experimental Spectra
Not Available
Predicted Spectra
Chemical Shift Submissions
Not Available
Species
Species of Origin
Chemical Taxonomy
Description Belongs to the class of organic compounds known as bicyclic monoterpenoids. These are monoterpenoids containing exactly 2 rings, which are fused to each other.
KingdomOrganic compounds  
Super ClassLipids and lipid-like molecules  
ClassPrenol lipids  
Sub ClassMonoterpenoids  
Direct ParentBicyclic monoterpenoids  
Alternative Parents
Substituents
  • Bicyclic monoterpenoid
    • 

  • Thujane monoterpenoid
    • 

  • Cyclic alcohol
    • 

  • Secondary alcohol
    • 

  • Organic oxygen compound
    • 

  • Hydrocarbon derivative
    • 

  • Organooxygen compound
    • 

  • Alcohol
    • 

  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1.9ALOGPS
logP1.63ChemAxon
logS-2ALOGPS
pKa (Strongest Acidic)17.87ChemAxon
pKa (Strongest Basic)-1.5ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count1ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area20.23 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity45.17 m³·mol⁻¹ChemAxon
Polarizability18.1 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDFDB006162  
KNApSAcK IDC00000831  
Chemspider IDNot Available
KEGG Compound IDC02213  
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound94147  
PDB IDNot Available
ChEBI ID15387  
Good Scents IDNot Available
References
General References
  1. Fan S, Chang J, Zong Y, Hu G, Jia J: GC-MS Analysis of the Composition of the Essential Oil from Dendranthema indicum Var. Aromaticum Using Three Extraction Methods and Two Columns. Molecules. 2018 Mar 4;23(3). pii: molecules23030576. doi: 10.3390/molecules23030576. [PubMed:29510531  ]