NP-MRD: Showing NP-Card for Elatumenol B (NP0044726)

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Record Information

Version

2.0

Created at

2022-02-24 21:13:45 UTC

Updated at

2026-02-13 20:13:53 UTC

NP-MRD ID

NP0044726

Natural Product DOI

https://doi.org/10.57994/6712

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Elatumenol B

Description

Elatumenol B was first documented in 2021 (PMID: 34846889).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 36 36  0  0  0  0  0  0  0  0999 V2000
   -6.6527   -0.4658    0.0563 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4942   -0.0609   -0.4181 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2905   -0.0032    0.3879 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1258    0.3989   -0.0710 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9539    0.4313    0.7988 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4279    1.6896    1.0058 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0757    1.5888    1.2333 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3209    0.1542    1.1091 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.6789   -0.0605    0.5514 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9078   -0.6472   -0.5822 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2361   -0.8733   -1.1621 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4018   -0.3511   -0.3953 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.4136    1.1372   -0.1990 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5571   -0.7949   -1.0677 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7831   -0.3790    0.2217 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9783   -1.7282    0.3319 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5339   -0.5050   -0.5444 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7550   -0.7800    1.0948 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4426    0.2398   -1.4505 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3942   -0.3217    1.4405 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0522    0.7038   -1.1002 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2060    0.0178    1.8098 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2525    2.0643    2.1832 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4315    2.1910    0.4233 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2378   -0.3134    2.1028 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5049    0.2899    1.1501 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0564   -1.0071   -1.1618 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4157   -1.9827   -1.2878 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2986   -0.3828   -2.1847 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4496   -0.8604    0.6054 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2885    1.5278   -0.7816 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5464    1.4074    0.8536 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4639    1.5477   -0.5848 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5975   -1.7907   -0.9489 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6802   -0.0083   -0.8193 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2135   -2.0731   -0.5874 H   0  0  0  0  0  0  0  0  0  0  0  0
 13 12  1  0
 12 14  1  0
 12 11  1  0
 11 10  1  0
 10  9  2  0
  9  8  1  0
  8  7  1  0
  7  6  1  0
  6  5  1  0
  5  4  1  0
  4  3  2  0
  3  2  1  0
  2  1  2  0
  5 15  1  0
 15 16  1  0
 15  8  1  0
 13 31  1  0
 13 32  1  0
 13 33  1  0
 12 30  1  1
 14 34  1  0
 11 28  1  0
 11 29  1  0
 10 27  1  0
  9 26  1  0
  8 25  1  1
  7 23  1  0
  7 24  1  0
  5 22  1  1
  4 21  1  0
  3 20  1  0
  2 19  1  0
  1 17  1  0
  1 18  1  0
 15 35  1  6
 16 36  1  0
M  END


  Mrv1652302242222132D          

 16 16  0  0  1  0            999 V2000
    1.9967    4.4143    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9967    3.5893    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7112    3.1768    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2822    3.1768    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2822    2.3518    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5678    1.9393    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5678    1.1143    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2352    0.6294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9803   -0.1553    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1553   -0.1553    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3297   -0.8227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1501   -0.7365    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6351   -1.4039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2995   -2.1576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0997    0.6294    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.8843    0.8843    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  6  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  7  6  1  1  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  1  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 10 15  1  0  0  0  0
  7 15  1  0  0  0  0
 15 16  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0044726

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H](O)C\C=C\[C@H]1CO[C@@H](\C=C\C=C)[C@@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C13H20O3/c1-3-4-8-12-13(15)11(9-16-12)7-5-6-10(2)14/h3-5,7-8,10-15H,1,6,9H2,2H3/b7-5+,8-4+/t10-,11-,12-,13+/m0/s1

> <INCHI_KEY>
YWZCPZKYYXANAA-PNMDUVRXSA-N

> <FORMULA>
C13H20O3

> <MOLECULAR_WEIGHT>
224.3

> <EXACT_MASS>
224.141244504

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
36

> <JCHEM_AVERAGE_POLARIZABILITY>
25.13356359880735

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2S,3R,4S)-2-[(1E)-buta-1,3-dien-1-yl]-4-[(1E,4S)-4-hydroxypent-1-en-1-yl]oxolan-3-ol

> <ALOGPS_LOGP>
1.46

> <JCHEM_LOGP>
1.1318861609999993

> <ALOGPS_LOGS>
-2.22

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
17.636873941613896

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.761788806754282

> <JCHEM_PKA_STRONGEST_BASIC>
-1.6442082627959222

> <JCHEM_POLAR_SURFACE_AREA>
49.69

> <JCHEM_REFRACTIVITY>
66.70640000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.36e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3R,4S)-2-[(1E)-buta-1,3-dien-1-yl]-4-[(1E,4S)-4-hydroxypent-1-en-1-yl]oxolan-3-ol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 24-FEB-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-FEB-22         0                                  
HETATM    1  C   UNK     0       3.727   8.240   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.727   6.700   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       5.061   5.930   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       2.393   5.930   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.393   4.390   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.060   3.620   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.060   2.080   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.306   1.175   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       1.830  -0.290   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       0.290  -0.290   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -0.615  -1.536   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -2.147  -1.375   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -3.052  -2.621   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -2.426  -4.027   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -0.186   1.175   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      -1.651   1.651   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8   15                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   15                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13                                                            
CONECT   15   10    7   16                                                  
CONECT   16   15                                                            
MASTER        0    0    0    0    0    0    0    0   16    0   32    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₃H₂₀O₃

Average Mass

224.3000 Da

Monoisotopic Mass

224.14124 Da

IUPAC Name

(2S,3R,4S)-2-[(1E)-buta-1,3-dien-1-yl]-4-[(1E,4S)-4-hydroxypent-1-en-1-yl]oxolan-3-ol

Traditional Name

(2S,3R,4S)-2-[(1E)-buta-1,3-dien-1-yl]-4-[(1E,4S)-4-hydroxypent-1-en-1-yl]oxolan-3-ol

CAS Registry Number

Not Available

SMILES

C[C@H](O)C\C=C\[C@H]1CO[C@@H](\C=C\C=C)[C@@H]1O

InChI Identifier

InChI=1S/C13H20O3/c1-3-4-8-12-13(15)11(9-16-12)7-5-6-10(2)14/h3-5,7-8,10-15H,1,6,9H2,2H3/b7-5+,8-4+/t10-,11-,12-,13+/m0/s1

InChI Key

YWZCPZKYYXANAA-PNMDUVRXSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, Methanol-d4, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 125 MHz, Methanol-d4, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 150 MHz, Methanol-d4, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 175 MHz, Methanol-d4, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, Methanol-d4, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 225 MHz, Methanol-d4, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, Methanol-d4, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 250 MHz, Methanol-d4, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, Methanol-d4, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, Methanol-d4, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, Methanol-d4, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, Methanol-d4, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, Methanol-d4, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, Methanol-d4, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, Methanol-d4, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, Methanol-d4, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, Methanol-d4, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, Methanol-d4, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, Methanol-d4, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, Methanol-d4, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹H NMR Spectrum (1D, 700.0, Methanol-d4, simulated)	[email protected]	Not Available	Not Available	2026-02-13	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 175.0, Methanol-d4, simulated)	[email protected]	Not Available	Not Available	2026-02-13	View Spectrum

Species

Species of Origin

Species Name	Source	Reference
Chaetomium elatum		Not Available
Chaetomium elatum	Linington's dataset npmrd_submissions_20220207	34846889

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.46	ALOGPS
logP	1.13	ChemAxon
logS	-2.2	ALOGPS
pKa (Strongest Acidic)	13.76	ChemAxon
pKa (Strongest Basic)	-1.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	49.69 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	66.71 m³·mol⁻¹	ChemAxon
Polarizability	25.13 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

Ju F, Kuang QX, Li QZ, Huang LJ, Guo WX, Gong LQ, Dai YF, Wang L, Gu YC, Wang D, Deng Y, Guo DL: Aureonitol Analogues and Orsellinic Acid Esters Isolated from Chaetomium elatum and Their Antineuroinflammatory Activity. J Nat Prod. 2021 Dec 24;84(12):3044-3054. doi: 10.1021/acs.jnatprod.1c00783. Epub 2021 Nov 30. [PubMed:34846889 ]
DOI: 10.1021/acs.jnatprod.1c00783
PMID: 34846889

Showing NP-Card for Elatumenol B (NP0044726)

MOL for NP0044726 (Elatumenol B)

3D MOL for NP0044726 (Elatumenol B)

3D SDF for NP0044726 (Elatumenol B)

3D-SDF for NP0044726 (Elatumenol B)

PDB for NP0044726 (Elatumenol B)

3D PDB for NP0044726 (Elatumenol B)

SMILES for NP0044726 (Elatumenol B)

INCHI for NP0044726 (Elatumenol B)

Structure for NP0044726 (Elatumenol B)

3D Structure for NP0044726 (Elatumenol B)