NP-MRD: Showing NP-Card for 6beta-hydroxybrefeldin C (NP0044143)

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Record Information

Version

1.0

Created at

2021-11-12 23:52:28 UTC

Updated at

2021-11-26 17:45:54 UTC

NP-MRD ID

NP0044143

Secondary Accession Numbers

None

Natural Product Identification

Common Name

6beta-hydroxybrefeldin C

Description

It was first documented in 2016 (PMID: 27067647). Based on a literature review a significant number of articles have been published on 6beta-hydroxybrefeldin C (PMID: 34756847) (PMID: 34758548) (PMID: 34758547) (PMID: 34758546).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 44 45  0  0  0  0  0  0  0  0999 V2000
    4.3542    0.6113   -0.3555 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8517    0.6628   -0.4446 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2531   -0.7221   -0.5533 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1342   -1.2769    0.8618 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0577   -2.2996    0.9788 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4005   -2.6049   -0.3279 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7490   -2.1338   -0.7434 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6440   -1.1984   -0.0090 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.0991   -1.6443   -0.2151 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8516   -0.3349   -0.1901 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9559    0.5531   -1.0212 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.2314    0.3715   -2.3799 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5385    0.1468   -0.6869 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8328    1.1659    0.1788 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7694    1.5375    1.1678 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4656    2.3603   -0.6244 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6839    3.0215   -0.4671 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7110    2.6587    0.5005 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1268    3.5816    1.2926 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2716    1.3944    0.6296 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8360    1.4008   -1.0007 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7226   -0.3636   -0.7604 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7455    0.7428    0.6565 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6169    1.1770   -1.4205 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2224   -0.6799   -0.9604 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8974   -1.4050   -1.1437 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0928   -1.7209    1.1929 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9797   -0.3935    1.5158 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2569   -1.9906    1.7160 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4863   -3.2178    1.4298 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9696   -3.2923   -0.9673 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1075   -2.4448   -1.7249 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4858   -1.1658    1.0624 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2376   -2.1532   -1.1719 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4113   -2.2916    0.6516 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8017   -0.4991   -0.7419 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9778    0.0718    0.8147 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1864    1.5968   -0.7864 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8685    1.0441   -2.7207 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9822    0.0915   -1.6517 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0241    0.6953    0.6613 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2023    2.3601    0.8275 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1990    2.6807   -1.3691 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9026    3.9070   -1.0918 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2 20  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 11 13  1  0
 13 14  1  0
 14 15  1  0
 14 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  2  0
 18 20  1  0
 13  8  1  0
  1 21  1  0
  1 22  1  0
  1 23  1  0
  2 24  1  6
  3 25  1  0
  3 26  1  0
  4 27  1  0
  4 28  1  0
  5 29  1  0
  5 30  1  0
  6 31  1  0
  7 32  1  0
  8 33  1  1
  9 34  1  0
  9 35  1  0
 10 36  1  0
 10 37  1  0
 11 38  1  1
 12 39  1  0
 13 40  1  6
 14 41  1  1
 15 42  1  0
 16 43  1  0
 17 44  1  0
M  END


  Mrv1652311132100522D          

 20 21  0  0  1  0            999 V2000
    8.4392   -2.1015    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6629   -1.8222    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.9806   -2.2860    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.4326   -1.0300    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6080   -1.0042    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9298   -0.4084    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1376   -0.6387    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9409   -1.4399    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1487   -1.6702    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4475   -1.2355    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8174   -1.7682    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1293   -2.5319    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6947   -3.2332    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9521   -2.4714    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.5476   -3.0423    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3510   -3.8435    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3398   -2.8120    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9354   -3.3829    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7276   -3.1526    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3106   -3.7363    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  6  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  7  6  1  4  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  1  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  1  0  0  0
 14 12  1  6  0  0  0
  9 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  1  0  0  0
 15 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
  3 19  1  0  0  0  0
 19 20  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0044143

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]1CCCC=C[C@@H]2CC[C@H](O)[C@H]2[C@H](O)\C=C\C(=O)O1

> <INCHI_IDENTIFIER>
InChI=1S/C16H24O4/c1-11-5-3-2-4-6-12-7-8-13(17)16(12)14(18)9-10-15(19)20-11/h4,6,9-14,16-18H,2-3,5,7-8H2,1H3/b6-4?,10-9+/t11-,12+,13-,14+,16-/m0/s1

> <INCHI_KEY>
KERARSSAQYULJS-IBXNSWNFSA-N

> <FORMULA>
C16H24O4

> <MOLECULAR_WEIGHT>
280.364

> <EXACT_MASS>
280.167459253

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
44

> <JCHEM_AVERAGE_POLARIZABILITY>
30.598642528100555

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,6S,11aS,14S,14aS)-1,14-dihydroxy-6-methyl-1H,4H,6H,7H,8H,9H,11aH,12H,13H,14H,14aH-cyclopenta[f]oxacyclotridecan-4-one

> <ALOGPS_LOGP>
1.86

> <JCHEM_LOGP>
2.048772634666666

> <ALOGPS_LOGS>
-2.50

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.07652429465735

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.276955133740572

> <JCHEM_PKA_STRONGEST_BASIC>
-2.869139259342682

> <JCHEM_POLAR_SURFACE_AREA>
66.75999999999999

> <JCHEM_REFRACTIVITY>
78.64999999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
8.94e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,6S,11aS,14S,14aS)-1,14-dihydroxy-6-methyl-1H,6H,7H,8H,9H,11aH,12H,13H,14H,14aH-cyclopenta[f]oxacyclotridecan-4-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 13-NOV-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   13-NOV-21         0                                  
HETATM    1  C   UNK     0      15.753  -3.923   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      14.304  -3.401   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0      13.031  -4.267   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0      13.874  -1.923   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      12.335  -1.875   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      11.069  -0.762   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       9.590  -1.192   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       9.223  -2.688   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       7.744  -3.118   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.435  -2.306   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       5.259  -3.301   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       5.841  -4.726   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       5.030  -6.035   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       7.377  -4.613   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       8.489  -5.679   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       8.122  -7.175   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       9.968  -5.249   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      11.079  -6.315   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      12.558  -5.885   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      13.646  -6.975   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2   19                                                       
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   14                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12    9   15                                                  
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18    3   20                                                  
CONECT   20   19                                                            
MASTER        0    0    0    0    0    0    0    0   20    0   42    0
END

View in JSmol

Synonyms

Value	Source
6b-Hydroxybrefeldin C	Generator
6Β-hydroxybrefeldin C	Generator

Chemical Formula

C₁₆H₂₄O₄

Average Mass

280.3640 Da

Monoisotopic Mass

280.16746 Da

IUPAC Name

(1R,6S,11aS,14S,14aS)-1,14-dihydroxy-6-methyl-1H,4H,6H,7H,8H,9H,11aH,12H,13H,14H,14aH-cyclopenta[f]oxacyclotridecan-4-one

Traditional Name

(1R,6S,11aS,14S,14aS)-1,14-dihydroxy-6-methyl-1H,6H,7H,8H,9H,11aH,12H,13H,14H,14aH-cyclopenta[f]oxacyclotridecan-4-one

CAS Registry Number

Not Available

SMILES

C[C@H]1CCCC=C[C@@H]2CC[C@H](O)[C@H]2[C@H](O)\C=C\C(=O)O1

InChI Identifier

InChI=1S/C16H24O4/c1-11-5-3-2-4-6-12-7-8-13(17)16(12)14(18)9-10-15(19)20-11/h4,6,9-14,16-18H,2-3,5,7-8H2,1H3/b6-4?,10-9+/t11-,12+,13-,14+,16-/m0/s1

InChI Key

KERARSSAQYULJS-IBXNSWNFSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 150 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 250 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 175 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 225 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 125 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Penicillium sp. DT-F29

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.86	ALOGPS
logP	2.05	ChemAxon
logS	-2.5	ALOGPS
pKa (Strongest Acidic)	14.28	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	66.76 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	78.65 m³·mol⁻¹	ChemAxon
Polarizability	30.6 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

156583124

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Hu ZF, Qin LL, Ding WJ, Liu Y, Ma ZJ: New analogues of brefeldin A from sediment-derived fungus Penicillium sp. DT-F29. Nat Prod Res. 2016 Oct;30(20):2311-5. doi: 10.1080/14786419.2016.1169414. Epub 2016 Apr 11. [PubMed:27067647 ]
McDonagh MS, Wagner J, Ahmed AY, Morasco B, Kansagara D, Chou R: Living Systematic Review on Cannabis and Other Plant-Based Treatments for Chronic Pain - Quarterly Progress Report/Addendum: September 2021. 2020 Dec. [PubMed:34756847 ]
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Showing NP-Card for 6beta-hydroxybrefeldin C (NP0044143)

MOL for NP0044143 (6beta-hydroxybrefeldin C)

3D MOL for NP0044143 (6beta-hydroxybrefeldin C)

3D SDF for NP0044143 (6beta-hydroxybrefeldin C)

3D-SDF for NP0044143 (6beta-hydroxybrefeldin C)

PDB for NP0044143 (6beta-hydroxybrefeldin C)

3D PDB for NP0044143 (6beta-hydroxybrefeldin C)

SMILES for NP0044143 (6beta-hydroxybrefeldin C)

INCHI for NP0044143 (6beta-hydroxybrefeldin C)

Structure for NP0044143 (6beta-hydroxybrefeldin C)

3D Structure for NP0044143 (6beta-hydroxybrefeldin C)