NP-MRD: Showing NP-Card for Izospiciformin (NP0044134)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

1.0

Created at

2021-11-12 23:52:01 UTC

Updated at

2021-11-26 17:45:48 UTC

NP-MRD ID

NP0044134

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Izospiciformin

Description

Izospiciformin is found in Anthemis stribrnyi subsp. tracica. It was first documented in 2019 (PMID: 30634079).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 39 41  0  0  0  0  0  0  0  0999 V2000
   -1.7159    3.4653    0.7857 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6547    2.8065    0.3497 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5310    3.4761   -0.1695 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7420    4.7073   -0.3437 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4359    2.4963   -0.4561 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9600    1.2008   -0.1725 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8730    0.5918    0.8714 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6101   -0.5169    0.2436 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0053   -0.3130   -0.2622 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0487   -1.6965    0.1217 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6983   -1.9596    0.5917 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3247   -2.0549   -0.5515 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6999   -1.7817   -0.0761 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.7183   -2.9307   -0.1035 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6996   -1.0455    1.1840 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1847   -0.4641    0.0204 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.4467    0.6623   -0.6268 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.3136    1.6650   -1.0844 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4606    1.3348    0.3008 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7876    4.5313    0.7918 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5678    2.8764    1.1612 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0253    0.6434   -1.1454 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3527    0.3363    1.8152 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6408    1.3560    1.2148 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0945   -0.6476   -1.3166 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2669    0.7761   -0.2671 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7464   -0.8319    0.3821 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6066   -2.5022   -0.3434 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7334   -2.9553    1.1353 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2647   -1.2741    1.3161 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2797   -3.1415   -0.8652 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0034   -1.4975   -1.4402 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1692   -3.8510   -0.4001 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2297   -3.0338    0.8737 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4121   -2.6933   -0.9361 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2911   -0.3097    0.0607 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8940    0.3328   -1.5554 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2195    1.2649   -1.0968 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5629    0.9777    1.3567 H   0  0  0  0  0  0  0  0  0  0  0  0
 13 14  1  1
 13 16  1  0
 16 15  1  0
 16 17  1  0
 17 18  1  0
 17 19  1  0
 19  6  1  0
  6  5  1  0
  5  3  1  0
  3  4  2  0
  3  2  1  0
  2  1  2  3
  6  7  1  0
  7  8  1  0
  8  9  1  0
  8 10  2  0
 10 11  1  0
 11 12  1  0
 15 13  1  0
 12 13  1  0
  2 19  1  0
 14 33  1  0
 14 34  1  0
 14 35  1  0
 16 36  1  1
 17 37  1  6
 18 38  1  0
 19 39  1  1
  6 22  1  6
  1 20  1  0
  1 21  1  0
  7 23  1  0
  7 24  1  0
  9 25  1  0
  9 26  1  0
  9 27  1  0
 10 28  1  0
 11 29  1  0
 11 30  1  0
 12 31  1  0
 12 32  1  0
M  END


  Mrv1652311132100522D          

 22 24  0  0  1  0            999 V2000
    4.3155    2.7423    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4984    2.6288    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.9670    1.9977    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7792    1.8531    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1662    1.7994    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1073    0.9766    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4018    2.1098    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9658    2.8101    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.1649    2.6119    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1060    1.7890    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5943    1.3529    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8704    1.4787    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0687    0.6778    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0247    3.6330    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5560    4.2641    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1200    4.9645    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3568    4.4624    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1213    4.1521    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5573    3.4517    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6554    2.0457    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9331    2.7409    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9944    1.1732    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  6  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  2  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  1  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 10 12  1  0  0  0  0
  7 12  1  0  0  0  0
 12 13  2  0  0  0  0
  8 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
  2 19  1  0  0  0  0
  8 20  1  6  0  0  0
  7 21  1  1  0  0  0
  3 22  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0044134

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H][C@@]12O[C@]1(C)CC\C=C(C)/C[C@]1([H])OC(=O)C(=C)[C@@]1([H])[C@@H]2O

> <INCHI_IDENTIFIER>
InChI=1S/C15H20O4/c1-8-5-4-6-15(3)13(19-15)12(16)11-9(2)14(17)18-10(11)7-8/h5,10-13,16H,2,4,6-7H2,1,3H3/b8-5-/t10-,11+,12-,13-,15+/m0/s1

> <INCHI_KEY>
ZMFCIMWRPFSUCY-LVNOKUKASA-N

> <FORMULA>
C15H20O4

> <MOLECULAR_WEIGHT>
264.321

> <EXACT_MASS>
264.136159124

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
39

> <JCHEM_AVERAGE_POLARIZABILITY>
28.044708328521132

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,2S,3S,5R,8Z,11S)-2-hydroxy-5,9-dimethyl-14-methylidene-4,12-dioxatricyclo[9.3.0.0^{3,5}]tetradec-8-en-13-one

> <ALOGPS_LOGP>
1.72

> <JCHEM_LOGP>
1.726130798333333

> <ALOGPS_LOGS>
-2.02

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.690122074517603

> <JCHEM_PKA_STRONGEST_BASIC>
-3.371740604605999

> <JCHEM_POLAR_SURFACE_AREA>
59.059999999999995

> <JCHEM_REFRACTIVITY>
70.1236

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.50e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,2S,3S,5R,8Z,11S)-2-hydroxy-5,9-dimethyl-14-methylidene-4,12-dioxatricyclo[9.3.0.0^{3,5}]tetradec-8-en-13-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 13-NOV-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   13-NOV-21         0                                  
HETATM    1  C   UNK     0       8.056   5.119   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.530   4.907   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.538   3.729   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       7.055   3.459   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       4.044   3.359   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       3.934   1.823   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       2.617   3.938   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.803   5.246   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       0.308   4.875   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       0.198   3.339   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      -1.109   2.526   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       1.625   2.760   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.995   1.265   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.913   6.782   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.905   7.960   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.091   9.267   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.399   8.330   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       5.826   7.751   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       6.640   6.443   0.000  0.00  0.00           C+0
HETATM   20  H   UNK     0       1.223   3.819   0.000  0.00  0.00           H+0
HETATM   21  H   UNK     0       3.609   5.116   0.000  0.00  0.00           H+0
HETATM   22  H   UNK     0       5.590   2.190   0.000  0.00  0.00           H+0
CONECT    1    2                                                            
CONECT    2    1    3    4   19                                             
CONECT    3    2    4    5   22                                             
CONECT    4    3    2                                                       
CONECT    5    3    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8   12   21                                             
CONECT    8    7    9   14   20                                             
CONECT    9    8   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10    7   13                                                  
CONECT   13   12                                                            
CONECT   14    8   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18    2                                                       
CONECT   20    8                                                            
CONECT   21    7                                                            
CONECT   22    3                                                            
MASTER        0    0    0    0    0    0    0    0   22    0   48    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₂₀O₄

Average Mass

264.3210 Da

Monoisotopic Mass

264.13616 Da

IUPAC Name

(1S,2S,3S,5R,8Z,11S)-2-hydroxy-5,9-dimethyl-14-methylidene-4,12-dioxatricyclo[9.3.0.0^{3,5}]tetradec-8-en-13-one

Traditional Name

(1S,2S,3S,5R,8Z,11S)-2-hydroxy-5,9-dimethyl-14-methylidene-4,12-dioxatricyclo[9.3.0.0^{3,5}]tetradec-8-en-13-one

CAS Registry Number

Not Available

SMILES

[H][C@@]12O[C@]1(C)CC\C=C(C)/C[C@]1([H])OC(=O)C(=C)[C@@]1([H])[C@@H]2O

InChI Identifier

InChI=1S/C15H20O4/c1-8-5-4-6-15(3)13(19-15)12(16)11-9(2)14(17)18-10(11)7-8/h5,10-13,16H,2,4,6-7H2,1,3H3/b8-5-/t10-,11+,12-,13-,15+/m0/s1

InChI Key

ZMFCIMWRPFSUCY-LVNOKUKASA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 150 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 250 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 175 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 225 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 125 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Anthemis stribrnyi subsp. tracica	Plant	KNApSAcK

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.72	ALOGPS
logP	1.73	ChemAxon
logS	-2	ALOGPS
pKa (Strongest Acidic)	13.69	ChemAxon
pKa (Strongest Basic)	-3.4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	59.06 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	70.12 m³·mol⁻¹	ChemAxon
Polarizability	28.04 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

Nawrot J, Budzianowski J, Nowak G: Phytochemical profiles of the leaves of Stizolophus balsamita and Psephellus sibiricus and their chemotaxonomic implications. Phytochemistry. 2019 Mar;159:172-178. doi: 10.1016/j.phytochem.2018.12.022. Epub 2019 Jan 9. [PubMed:30634079 ]

Showing NP-Card for Izospiciformin (NP0044134)

MOL for NP0044134 (Izospiciformin)

3D MOL for NP0044134 (Izospiciformin)

3D SDF for NP0044134 (Izospiciformin)

3D-SDF for NP0044134 (Izospiciformin)

PDB for NP0044134 (Izospiciformin)

3D PDB for NP0044134 (Izospiciformin)

SMILES for NP0044134 (Izospiciformin)

INCHI for NP0044134 (Izospiciformin)

Structure for NP0044134 (Izospiciformin)

3D Structure for NP0044134 (Izospiciformin)