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Record Information
Version2.0
Created at2021-06-22 17:26:24 UTC
Updated at2021-06-22 17:26:25 UTC
NP-MRD IDNP0043863
Secondary Accession NumbersNone
Natural Product Identification
Common NameDelphinidin 3-glucoside
DescriptionDelphinidin 3-glucoside, also known as myrtillin, belongs to the class of organic compounds known as anthocyanidin-3-o-glycosides. These are phenolic compounds containing one anthocyanidin moiety which is O-glycosidically linked to a carbohydrate moiety at the C3-position. Thus, delphinidin 3-glucoside is considered to be a flavonoid. Delphinidin 3-glucoside exists in all eukaryotes, ranging from yeast to plants to humans. Delphinidin 3-glucoside is a primary metabolite. Primary metabolites are metabolically or physiologically essential metabolites. They are directly involved in an organism’s growth, development or reproduction. Delphinidin 3-glucoside is found in Abies spp., Alopecurus spp., Anthoxanthum spp., Anthyllis pyrenaica, Arbutus unedo , Ardisia humilis, Avenula spp., Blighia sieboldii, Bothriochloa spp., Camellia sinensis , Ceratostigma plumbaginoides, Clitoria ternatea , Cornus mas , Cyathodes spp., Dactylis spp., Deschampsia spp., Elymus spp., Empetrum nigrum , Eugenia umbelliflora, Festuca spp., Frankenia grandiflora, Geranium sylvaticum, Hibiscus cannabinus, Hordeum spp., Hydrangea macrophylla , Impatiens balsamina , Limonium spp., Lobostemon spp., Malva sylvestris, Metrosideros spp., Miscanthus spp., Molinia spp., Morus alba , Mucuna sempervirens, Muntingia calabura , Muscari armeniacum , Nymphaea alba , Nymphaea candida , Nymphaea marliacea, Oryza spp., Passiflora suberosa, Pentachondra spp., Phalaris spp., Phleum spp., Picea spp., Pinus banksiana , Plumbago spp., Poa spp., Podocarpus spp., Polygonum spp., Pseudotsuga spp., Salix spp., Sinarundinaria spp., Trochocarpa spp., Tsuga spp., Vaccinium padifolium, Vaccinium spp., Verbena x hybrida, Vigna spp., Visnea mocanera and Vitis vinifera. Delphinidin 3-glucoside was first documented in 2014 (PMID: 24493900). Based on a literature review a significant number of articles have been published on Delphinidin 3-glucoside (PMID: 33353130) (PMID: 34200974) (PMID: 33586559) (PMID: 33465442) (PMID: 33396768) (PMID: 33292939).
Structure
Thumb
Synonyms
ValueSource
Delfinidin 3-O-beta-D-glucosideChEBI
Delphinidin 3-O-glucosideChEBI
MirtillinKegg
Delphinidin 3-O-beta-D-glucosideKegg
Delfinidin 3-O-b-D-glucosideGenerator
Delfinidin 3-O-β-D-glucosideGenerator
Delphinidin 3-O-b-D-glucosideGenerator
Delphinidin 3-O-β-D-glucosideGenerator
Delphinidin 3-monoglucosideHMDB
Delphinidin 3-O-beta-D-glucopyranosideHMDB
Delphinidol 3-glucosideHMDB
MyrtillinHMDB
Myrtillin aHMDB
Delphinidin 3-O-glucopyranosideHMDB
Delphinidin 3-O-beta-glucosideHMDB
Delphinidin-3-glucosideHMDB
Chemical FormulaC21H21O12
Average Mass465.3842 Da
Monoisotopic Mass465.10330 Da
IUPAC Name5,7-dihydroxy-3-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-2-(3,4,5-trihydroxyphenyl)-1lambda4-chromen-1-ylium
Traditional Name5,7-dihydroxy-3-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-2-(3,4,5-trihydroxyphenyl)-1lambda4-chromen-1-ylium
CAS Registry NumberNot Available
SMILES
OC[C@H]1O[C@@H](OC2=CC3=C(O)C=C(O)C=C3[O+]=C2C2=CC(O)=C(O)C(O)=C2)[C@H](O)[C@@H](O)[C@@H]1O
InChI Identifier
InChI=1S/C21H20O12/c22-6-15-17(28)18(29)19(30)21(33-15)32-14-5-9-10(24)3-8(23)4-13(9)31-20(14)7-1-11(25)16(27)12(26)2-7/h1-5,15,17-19,21-22,28-30H,6H2,(H4-,23,24,25,26,27)/p+1/t15-,17-,18+,19-,21-/m1/s1
InChI KeyXENHPQQLDPAYIJ-PEVLUNPASA-O
Experimental Spectra
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Chemical Taxonomy
Description Belongs to the class of organic compounds known as anthocyanidin-3-o-glycosides. These are phenolic compounds containing one anthocyanidin moiety which is O-glycosidically linked to a carbohydrate moiety at the C3-position.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassFlavonoids
Sub ClassFlavonoid glycosides
Direct ParentAnthocyanidin-3-O-glycosides
Alternative Parents
Substituents
  • Anthocyanidin-3-o-glycoside
  • Flavonoid-3-o-glycoside
  • Hydroxyflavonoid
  • 7-hydroxyflavonoid
  • 5-hydroxyflavonoid
  • 4'-hydroxyflavonoid
  • 3'-hydroxyflavonoid
  • Anthocyanidin
  • Hexose monosaccharide
  • Glycosyl compound
  • O-glycosyl compound
  • Benzopyran
  • 1-benzopyran
  • Benzenetriol
  • Pyrogallol derivative
  • Phenol
  • 1-hydroxy-2-unsubstituted benzenoid
  • 1-hydroxy-4-unsubstituted benzenoid
  • Oxane
  • Benzenoid
  • Monosaccharide
  • Monocyclic benzene moiety
  • Heteroaromatic compound
  • Secondary alcohol
  • Acetal
  • Organoheterocyclic compound
  • Oxacycle
  • Polyol
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Alcohol
  • Organooxygen compound
  • Primary alcohol
  • Organic cation
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP0.93ALOGPS
logP0.1ChemAxon
logS-2.8ALOGPS
pKa (Strongest Acidic)6.37ChemAxon
pKa (Strongest Basic)-3.6ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count12ChemAxon
Hydrogen Donor Count9ChemAxon
Polar Surface Area213.67 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity118.24 m³·mol⁻¹ChemAxon
Polarizability43.8 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDHMDB0037997
DrugBank IDNot Available
Phenol Explorer Compound ID27
FoodDB IDFDB017859
KNApSAcK IDC00006698
Chemspider ID391783
KEGG Compound IDC12138
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkDelphinidin-3-O-glucoside
METLIN IDNot Available
PubChem Compound13915667
PDB IDNot Available
ChEBI ID31463
Good Scents IDNot Available
References
General References