NP-MRD: Showing NP-Card for seco-bisabolol oxide B (NP0043725)

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Record Information

Version

1.0

Created at

2021-06-21 01:03:16 UTC

Updated at

2021-06-30 00:19:35 UTC

NP-MRD ID

NP0043725

Secondary Accession Numbers

None

Natural Product Identification

Common Name

seco-bisabolol oxide B

Provided By

JEOL Database JEOL Logo

Description

seco-bisabolol oxide B is found in Matricaria chamomilla. It was first documented in 2013 (Avonto, C., et al.).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306212103033D          

 45 45  0  0  0  0            999 V2000
   -1.3614   -2.9488   -4.2302 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0413   -2.3287   -3.0851 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3591   -2.0835   -2.5496 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.5671   -0.5726   -2.3987 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3059   -2.5787   -3.4977 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5122   -2.8414   -1.2209 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8784   -2.6624   -0.5831 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8886   -2.4569   -1.2611 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9699   -2.7981    0.9230 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7513   -1.4688    1.6517 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7515   -0.3926    1.2128 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8012   -1.6700    3.1706 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7895   -0.6695    3.6767 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.2877   -0.7542    2.6060 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.1914    0.4923    2.4683 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.8994    0.8287    3.7805 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2235    0.2976    1.3518 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3833    1.6208    2.1083 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4238   -0.9784    1.3637 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5955   -3.3408   -4.8937 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3962   -3.0717   -4.5313 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8573   -1.9538   -2.4691 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.1813    1.0875    4.5661 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5440    1.7073    3.6604 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5153   -0.0061    4.1303 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8810   -0.5534    1.5571 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7384    0.1358    0.3830 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8434    1.1941    1.2351 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1512    1.3326    1.3436 H   0  0  0  0  0  0  0  0  0  0  0  0
  3  2  1  0  0  0  0
 12 10  1  0  0  0  0
  2  1  2  3  0  0  0
 10 19  1  0  0  0  0
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  3  5  1  6  0  0  0
 19 14  1  0  0  0  0
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  7  6  1  0  0  0  0
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  6 27  1  0  0  0  0
  6 28  1  0  0  0  0
  2 22  1  0  0  0  0
  1 20  1  0  0  0  0
  1 21  1  0  0  0  0
 11 31  1  0  0  0  0
 11 32  1  0  0  0  0
 11 33  1  0  0  0  0
  4 23  1  0  0  0  0
  4 24  1  0  0  0  0
  4 25  1  0  0  0  0
  5 26  1  0  0  0  0
 16 39  1  0  0  0  0
 16 40  1  0  0  0  0
 16 41  1  0  0  0  0
 17 42  1  0  0  0  0
 17 43  1  0  0  0  0
 17 44  1  0  0  0  0
 18 45  1  0  0  0  0
M  END

     RDKit          3D

 45 45  0  0  0  0  0  0  0  0999 V2000
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   -1.0413   -2.3287   -3.0851 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3591   -2.0835   -2.5496 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.5671   -0.5726   -2.3987 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3059   -2.5787   -3.4977 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5122   -2.8414   -1.2209 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8784   -2.6624   -0.5831 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8886   -2.4569   -1.2611 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9699   -2.7981    0.9230 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7513   -1.4688    1.6517 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7515   -0.3926    1.2128 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8012   -1.6700    3.1706 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7895   -0.6695    3.6767 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2877   -0.7542    2.6060 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.1914    0.4923    2.4683 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.8994    0.8287    3.7805 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2235    0.2976    1.3518 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3833    1.6208    2.1083 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4238   -0.9784    1.3637 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5955   -3.3408   -4.8937 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3962   -3.0717   -4.5313 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8573   -1.9538   -2.4691 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.2587   -2.5186   -0.5132 H   0  0  0  0  0  0  0  0  0  0  0  0
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    2.6111   -0.1212    0.1617 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7846   -0.7254    1.3554 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6103    0.5358    1.7771 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.8434    1.1941    1.2351 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1512    1.3326    1.3436 H   0  0  0  0  0  0  0  0  0  0  0  0
  3  2  1  0
 12 10  1  0
  2  1  2  3
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 10 11  1  6
 10  9  1  0
  7  8  2  0
  3  4  1  0
  9  7  1  0
  3  5  1  6
 19 14  1  0
 14 38  1  1
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 14 15  1  0
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  6  3  1  0
 15 17  1  0
 13 12  1  0
 15 18  1  6
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M  END


  Mrv1652306212103033D          

 45 45  0  0  0  0            999 V2000
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   -1.0413   -2.3287   -3.0851 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.5671   -0.5726   -2.3987 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.4238   -0.9784    1.3637 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5955   -3.3408   -4.8937 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.8434    1.1941    1.2351 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1512    1.3326    1.3436 H   0  0  0  0  0  0  0  0  0  0  0  0
  3  2  1  0  0  0  0
 12 10  1  0  0  0  0
  2  1  2  3  0  0  0
 10 19  1  0  0  0  0
 10 11  1  6  0  0  0
 10  9  1  0  0  0  0
  7  8  2  0  0  0  0
  3  4  1  0  0  0  0
  9  7  1  0  0  0  0
  3  5  1  6  0  0  0
 19 14  1  0  0  0  0
 14 38  1  1  0  0  0
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  6 27  1  0  0  0  0
  6 28  1  0  0  0  0
  2 22  1  0  0  0  0
  1 20  1  0  0  0  0
  1 21  1  0  0  0  0
 11 31  1  0  0  0  0
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  4 23  1  0  0  0  0
  4 24  1  0  0  0  0
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  5 26  1  0  0  0  0
 16 39  1  0  0  0  0
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 17 44  1  0  0  0  0
 18 45  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0043725

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@](C([H])=C([H])[H])(C([H])([H])[H])C([H])([H])C(=O)C([H])([H])[C@]1(O[C@@]([H])(C([H])([H])C1([H])[H])C(O[H])(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C15H26O4/c1-6-14(4,18)9-11(16)10-15(5)8-7-12(19-15)13(2,3)17/h6,12,17-18H,1,7-10H2,2-5H3/t12-,14-,15-/m0/s1

> <INCHI_KEY>
ZFYOQBDWZOFODY-QEJZJMRPSA-N

> <FORMULA>
C15H26O4

> <MOLECULAR_WEIGHT>
270.369

> <EXACT_MASS>
270.183109317

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
45

> <JCHEM_AVERAGE_POLARIZABILITY>
30.024029647004713

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(4R)-4-hydroxy-1-[(2S,5S)-5-(2-hydroxypropan-2-yl)-2-methyloxolan-2-yl]-4-methylhex-5-en-2-one

> <ALOGPS_LOGP>
1.23

> <JCHEM_LOGP>
1.4734872103333332

> <ALOGPS_LOGS>
-2.39

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.735760308598529

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.111722090550256

> <JCHEM_PKA_STRONGEST_BASIC>
-3.007295952638297

> <JCHEM_POLAR_SURFACE_AREA>
66.76

> <JCHEM_REFRACTIVITY>
74.08919999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.10e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(4R)-4-hydroxy-1-[(2S,5S)-5-(2-hydroxypropan-2-yl)-2-methyloxolan-2-yl]-4-methylhex-5-en-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 45 45  0  0  0  0  0  0  0  0999 V2000
   -1.3614   -2.9488   -4.2302 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0413   -2.3287   -3.0851 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3591   -2.0835   -2.5496 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.5671   -0.5726   -2.3987 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3059   -2.5787   -3.4977 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5122   -2.8414   -1.2209 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8784   -2.6624   -0.5831 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8886   -2.4569   -1.2611 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9699   -2.7981    0.9230 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7513   -1.4688    1.6517 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7515   -0.3926    1.2128 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8012   -1.6700    3.1706 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7895   -0.6695    3.6767 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2877   -0.7542    2.6060 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.1914    0.4923    2.4683 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.8994    0.8287    3.7805 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2235    0.2976    1.3518 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3833    1.6208    2.1083 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4238   -0.9784    1.3637 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5955   -3.3408   -4.8937 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3962   -3.0717   -4.5313 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8573   -1.9538   -2.4691 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5999   -0.3310   -2.1281 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0979   -0.1436   -1.6415 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3812   -0.0569   -3.3489 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1913   -2.4738   -3.0915 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2587   -2.5186   -0.5132 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3911   -3.9209   -1.3779 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2211   -3.5400    1.2271 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9522   -3.2203    1.1668 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6111   -0.1212    0.1617 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7846   -0.7254    1.3554 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6103    0.5358    1.7771 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7981   -1.5259    3.5985 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4680   -2.6792    3.4441 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4140   -0.9144    4.6744 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2407    0.3280    3.7190 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9067   -1.6442    2.7801 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1813    1.0875    4.5661 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5440    1.7073    3.6604 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5153   -0.0061    4.1303 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8810   -0.5534    1.5571 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7384    0.1358    0.3830 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8434    1.1941    1.2351 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1512    1.3326    1.3436 H   0  0  0  0  0  0  0  0  0  0  0  0
  3  2  1  0
 12 10  1  0
  2  1  2  3
 10 19  1  0
 10 11  1  6
 10  9  1  0
  7  8  2  0
  3  4  1  0
  9  7  1  0
  3  5  1  6
 19 14  1  0
 14 38  1  1
  7  6  1  0
 14 15  1  0
 14 13  1  0
 15 16  1  0
  6  3  1  0
 15 17  1  0
 13 12  1  0
 15 18  1  6
 13 36  1  0
 13 37  1  0
 12 34  1  0
 12 35  1  0
  9 29  1  0
  9 30  1  0
  6 27  1  0
  6 28  1  0
  2 22  1  0
  1 20  1  0
  1 21  1  0
 11 31  1  0
 11 32  1  0
 11 33  1  0
  4 23  1  0
  4 24  1  0
  4 25  1  0
  5 26  1  0
 16 39  1  0
 16 40  1  0
 16 41  1  0
 17 42  1  0
 17 43  1  0
 17 44  1  0
 18 45  1  0
M  END

HEADER    PROTEIN                                 21-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   21-JUN-21         0                                  
HETATM    1  C   UNK     0      -1.361  -2.949  -4.230  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.041  -2.329  -3.085  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.359  -2.083  -2.550  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.567  -0.573  -2.399  0.00  0.00           C+0
HETATM    5  O   UNK     0       1.306  -2.579  -3.498  0.00  0.00           O+0
HETATM    6  C   UNK     0       0.512  -2.841  -1.221  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.878  -2.662  -0.583  0.00  0.00           C+0
HETATM    8  O   UNK     0       2.889  -2.457  -1.261  0.00  0.00           O+0
HETATM    9  C   UNK     0       1.970  -2.798   0.923  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.751  -1.469   1.652  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.752  -0.393   1.213  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.801  -1.670   3.171  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.790  -0.670   3.677  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.288  -0.754   2.606  0.00  0.00           C+0
HETATM   15  C   UNK     0      -1.191   0.492   2.468  0.00  0.00           C+0
HETATM   16  C   UNK     0      -1.899   0.829   3.781  0.00  0.00           C+0
HETATM   17  C   UNK     0      -2.224   0.298   1.352  0.00  0.00           C+0
HETATM   18  O   UNK     0      -0.383   1.621   2.108  0.00  0.00           O+0
HETATM   19  O   UNK     0       0.424  -0.978   1.364  0.00  0.00           O+0
HETATM   20  H   UNK     0      -0.596  -3.341  -4.894  0.00  0.00           H+0
HETATM   21  H   UNK     0      -2.396  -3.072  -4.531  0.00  0.00           H+0
HETATM   22  H   UNK     0      -1.857  -1.954  -2.469  0.00  0.00           H+0
HETATM   23  H   UNK     0       1.600  -0.331  -2.128  0.00  0.00           H+0
HETATM   24  H   UNK     0      -0.098  -0.144  -1.642  0.00  0.00           H+0
HETATM   25  H   UNK     0       0.381  -0.057  -3.349  0.00  0.00           H+0
HETATM   26  H   UNK     0       2.191  -2.474  -3.091  0.00  0.00           H+0
HETATM   27  H   UNK     0      -0.259  -2.519  -0.513  0.00  0.00           H+0
HETATM   28  H   UNK     0       0.391  -3.921  -1.378  0.00  0.00           H+0
HETATM   29  H   UNK     0       1.221  -3.540   1.227  0.00  0.00           H+0
HETATM   30  H   UNK     0       2.952  -3.220   1.167  0.00  0.00           H+0
HETATM   31  H   UNK     0       2.611  -0.121   0.162  0.00  0.00           H+0
HETATM   32  H   UNK     0       3.785  -0.725   1.355  0.00  0.00           H+0
HETATM   33  H   UNK     0       2.610   0.536   1.777  0.00  0.00           H+0
HETATM   34  H   UNK     0       2.798  -1.526   3.599  0.00  0.00           H+0
HETATM   35  H   UNK     0       1.468  -2.679   3.444  0.00  0.00           H+0
HETATM   36  H   UNK     0       0.414  -0.914   4.674  0.00  0.00           H+0
HETATM   37  H   UNK     0       1.241   0.328   3.719  0.00  0.00           H+0
HETATM   38  H   UNK     0      -0.907  -1.644   2.780  0.00  0.00           H+0
HETATM   39  H   UNK     0      -1.181   1.087   4.566  0.00  0.00           H+0
HETATM   40  H   UNK     0      -2.544   1.707   3.660  0.00  0.00           H+0
HETATM   41  H   UNK     0      -2.515  -0.006   4.130  0.00  0.00           H+0
HETATM   42  H   UNK     0      -2.881  -0.553   1.557  0.00  0.00           H+0
HETATM   43  H   UNK     0      -1.738   0.136   0.383  0.00  0.00           H+0
HETATM   44  H   UNK     0      -2.843   1.194   1.235  0.00  0.00           H+0
HETATM   45  H   UNK     0       0.151   1.333   1.344  0.00  0.00           H+0
CONECT    1    2   20   21                                                  
CONECT    2    3    1   22                                                  
CONECT    3    2    4    5    6                                             
CONECT    4    3   23   24   25                                             
CONECT    5    3   26                                                       
CONECT    6    7    3   27   28                                             
CONECT    7    8    9    6                                                  
CONECT    8    7                                                            
CONECT    9   10    7   29   30                                             
CONECT   10   12   19   11    9                                             
CONECT   11   10   31   32   33                                             
CONECT   12   10   13   34   35                                             
CONECT   13   14   12   36   37                                             
CONECT   14   19   38   15   13                                             
CONECT   15   14   16   17   18                                             
CONECT   16   15   39   40   41                                             
CONECT   17   15   42   43   44                                             
CONECT   18   15   45                                                       
CONECT   19   10   14                                                       
CONECT   20    1                                                            
CONECT   21    1                                                            
CONECT   22    2                                                            
CONECT   23    4                                                            
CONECT   24    4                                                            
CONECT   25    4                                                            
CONECT   26    5                                                            
CONECT   27    6                                                            
CONECT   28    6                                                            
CONECT   29    9                                                            
CONECT   30    9                                                            
CONECT   31   11                                                            
CONECT   32   11                                                            
CONECT   33   11                                                            
CONECT   34   12                                                            
CONECT   35   12                                                            
CONECT   36   13                                                            
CONECT   37   13                                                            
CONECT   38   14                                                            
CONECT   39   16                                                            
CONECT   40   16                                                            
CONECT   41   16                                                            
CONECT   42   17                                                            
CONECT   43   17                                                            
CONECT   44   17                                                            
CONECT   45   18                                                            
MASTER        0    0    0    0    0    0    0    0   45    0   90    0
END

RDKit          3D

45 45  0  0  0  0  0  0  0  0999 V2000
   -1.3614   -2.9488   -4.2302 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0413   -2.3287   -3.0851 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3591   -2.0835   -2.5496 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.5671   -0.5726   -2.3987 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3059   -2.5787   -3.4977 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5122   -2.8414   -1.2209 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8784   -2.6624   -0.5831 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8886   -2.4569   -1.2611 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9699   -2.7981    0.9230 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7513   -1.4688    1.6517 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7515   -0.3926    1.2128 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8012   -1.6700    3.1706 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7895   -0.6695    3.6767 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2877   -0.7542    2.6060 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.1914    0.4923    2.4683 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.8994    0.8287    3.7805 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2235    0.2976    1.3518 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3833    1.6208    2.1083 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4238   -0.9784    1.3637 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5955   -3.3408   -4.8937 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3962   -3.0717   -4.5313 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8573   -1.9538   -2.4691 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5999   -0.3310   -2.1281 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0979   -0.1436   -1.6415 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3812   -0.0569   -3.3489 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1913   -2.4738   -3.0915 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2587   -2.5186   -0.5132 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3911   -3.9209   -1.3779 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2211   -3.5400    1.2271 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9522   -3.2203    1.1668 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6111   -0.1212    0.1617 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7846   -0.7254    1.3554 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6103    0.5358    1.7771 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7981   -1.5259    3.5985 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4680   -2.6792    3.4441 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4140   -0.9144    4.6744 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2407    0.3280    3.7190 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9067   -1.6442    2.7801 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1813    1.0875    4.5661 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5440    1.7073    3.6604 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5153   -0.0061    4.1303 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8810   -0.5534    1.5571 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7384    0.1358    0.3830 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8434    1.1941    1.2351 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1512    1.3326    1.3436 H   0  0  0  0  0  0  0  0  0  0  0  0
  3  2  1  0
 12 10  1  0
  2  1  2  3
 10 19  1  0
 10 11  1  6
 10  9  1  0
  7  8  2  0
  3  4  1  0
  9  7  1  0
  3  5  1  6
 19 14  1  0
 14 38  1  1
  7  6  1  0
 14 15  1  0
 14 13  1  0
 15 16  1  0
  6  3  1  0
 15 17  1  0
 13 12  1  0
 15 18  1  6
 13 36  1  0
 13 37  1  0
 12 34  1  0
 12 35  1  0
  9 29  1  0
  9 30  1  0
  6 27  1  0
  6 28  1  0
  2 22  1  0
  1 20  1  0
  1 21  1  0
 11 31  1  0
 11 32  1  0
 11 33  1  0
  4 23  1  0
  4 24  1  0
  4 25  1  0
  5 26  1  0
 16 39  1  0
 16 40  1  0
 16 41  1  0
 17 42  1  0
 17 43  1  0
 17 44  1  0
 18 45  1  0
M  END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₂₆O₄

Average Mass

270.3690 Da

Monoisotopic Mass

270.18311 Da

IUPAC Name

(4R)-4-hydroxy-1-[(2S,5S)-5-(2-hydroxypropan-2-yl)-2-methyloxolan-2-yl]-4-methylhex-5-en-2-one

Traditional Name

(4R)-4-hydroxy-1-[(2S,5S)-5-(2-hydroxypropan-2-yl)-2-methyloxolan-2-yl]-4-methylhex-5-en-2-one

CAS Registry Number

Not Available

SMILES

[H]O[C@](C([H])=C([H])[H])(C([H])([H])[H])C([H])([H])C(=O)C([H])([H])[C@]1(O[C@@]([H])(C([H])([H])C1([H])[H])C(O[H])(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H]

InChI Identifier

InChI=1S/C15H26O4/c1-6-14(4,18)9-11(16)10-15(5)8-7-12(19-15)13(2,3)17/h6,12,17-18H,1,7-10H2,2-5H3/t12-,14-,15-/m0/s1

InChI Key

ZFYOQBDWZOFODY-QEJZJMRPSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 150 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 250 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 175 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 225 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 125 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Matricaria chamomilla	JEOL database	Avonto, C., et al, J. Nat. Prod. 76, 1848 (2013)

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.23	ALOGPS
logP	1.47	ChemAxon
logS	-2.4	ALOGPS
pKa (Strongest Acidic)	14.11	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	66.76 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	74.09 m³·mol⁻¹	ChemAxon
Polarizability	30.02 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

Avonto, C., et al. (2013). Avonto, C., et al, J. Nat. Prod. 76, 1848 (2013). J. Nat. Prod..

Showing NP-Card for seco-bisabolol oxide B (NP0043725)

MOL for NP0043725 (seco-bisabolol oxide B)

3D MOL for NP0043725 (seco-bisabolol oxide B)

3D SDF for NP0043725 (seco-bisabolol oxide B)

3D-SDF for NP0043725 (seco-bisabolol oxide B)

PDB for NP0043725 (seco-bisabolol oxide B)

3D PDB for NP0043725 (seco-bisabolol oxide B)

SMILES for NP0043725 (seco-bisabolol oxide B)

INCHI for NP0043725 (seco-bisabolol oxide B)

Structure for NP0043725 (seco-bisabolol oxide B)

3D Structure for NP0043725 (seco-bisabolol oxide B)