NP-MRD: Showing NP-Card for hypercohin F (NP0043625)

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Record Information

Version

2.0

Created at

2021-06-21 00:58:45 UTC

Updated at

2021-06-30 00:19:24 UTC

NP-MRD ID

NP0043625

Secondary Accession Numbers

None

Natural Product Identification

Common Name

hypercohin F

Provided By

JEOL Database JEOL Logo

Description

hypercohin F is found in Hypericum cohaerens and Hypericum perforatum var.angustifolium . hypercohin F was first documented in 2013 (Liu, X., et al.).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306212102583D          

 95 97  0  0  0  0            999 V2000
    3.5697    2.6381   -0.4517 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2287    1.2553   -0.9867 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3545    0.4297   -0.0284 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1112    0.0695    1.2527 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9036   -0.8579   -0.7402 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7439   -1.7269   -0.9854 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3898   -1.0494   -1.0476 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.2019    0.2812   -1.5654 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3159    0.9025   -2.4925 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4339    0.8422   -0.9176 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7806    2.2772   -1.2093 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.8203    3.2333   -0.5503 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9970    3.9448    0.5806 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0797    4.8740    1.0790 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2243    3.9058    1.4477 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1335    0.0374   -0.1007 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1638    0.5184    0.6880 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9884   -0.1816    1.9421 C   0  0  1  0  0  0  0  0  0  0  0  0
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   -4.7372    1.3052    3.0283 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1843   -0.9068    4.0664 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3559   -0.7566    1.9880 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5125   -1.5822    1.5572 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7973   -1.3859    0.2249 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.2625   -2.4201   -0.8013 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5948   -2.3097   -2.1947 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1383   -3.4528   -3.1037 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.6136   -3.3184   -3.3902 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6204   -4.1046   -2.9609 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4731   -5.2910   -2.0483 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0407   -3.8271   -3.3828 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0109   -2.2070   -2.1052 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.5669   -3.5883   -1.6603 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5175   -1.9273   -3.5731 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0039   -1.6483   -3.8141 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.2773   -1.4757   -5.2869 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8294   -2.3688   -6.1313 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0682   -2.0141   -7.5754 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2459   -3.7649   -5.7587 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2919   -1.4156    0.2778 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3192   -1.7019    1.3039 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2041    2.5805    0.4374 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6632    3.1938   -0.1959 H   0  0  0  0  0  0  0  0  0  0  0  0
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    4.1589    0.7167   -1.2078 H   0  0  0  0  0  0  0  0  0  0  0  0
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    2.5335   -0.6162    1.8790 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3199    0.9611    1.8519 H   0  0  0  0  0  0  0  0  0  0  0  0
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    0.9451    4.9061    0.4094 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9641    3.5509    2.4505 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0077    3.2514    1.0627 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6542    4.9089    1.5374 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.9769    1.8463    3.6007 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9285    1.8517    2.0983 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6771    1.3294    3.5919 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3839   -0.5012    4.6937 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1224   -0.8630    4.6318 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9871   -1.9702    3.8926 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3829   -0.2987    1.1268 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8893   -2.0155    2.3463 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3696   -2.2560    1.4361 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0820   -3.4267   -0.4000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3503   -2.3278   -0.9161 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9490   -1.3739   -2.6493 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6483   -3.4401   -4.0809 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9090   -4.4276   -2.6661 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8583   -2.4837   -4.0485 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.6641   -3.6250   -2.5056 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4539   -4.6916   -3.9127 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1157   -2.9618   -4.0498 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6569   -3.6230   -1.6404 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2695   -4.3817   -2.3536 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2129   -3.8757   -0.6661 H   0  0  0  0  0  0  0  0  0  0  0  0
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    0.2776   -2.8021   -4.1898 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6233   -2.4447   -3.3964 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3075   -0.7168   -3.3297 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0005   -0.4946   -5.6740 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7613   -0.9890   -7.8083 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5041   -2.6866   -8.2299 H   0  0  0  0  0  0  0  0  0  0  0  0
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    4.3344   -3.8625   -5.8221 H   0  0  0  0  0  0  0  0  0  0  0  0
  8 10  1  0  0  0  0
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 40 41  2  0  0  0  0
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M  END

     RDKit          3D

 95 97  0  0  0  0  0  0  0  0999 V2000
    3.5697    2.6381   -0.4517 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2287    1.2553   -0.9867 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3545    0.4297   -0.0284 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1112    0.0695    1.2527 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9036   -0.8579   -0.7402 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7439   -1.7269   -0.9854 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3898   -1.0494   -1.0476 C   0  0  1  0  0  0  0  0  0  0  0  0
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   -2.1335    0.0374   -0.1007 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1638    0.5184    0.6880 O   0  0  0  0  0  0  0  0  0  0  0  0
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    2.6632    3.1938   -0.1959 H   0  0  0  0  0  0  0  0  0  0  0  0
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    4.1589    0.7167   -1.2078 H   0  0  0  0  0  0  0  0  0  0  0  0
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    1.4714    1.0080    0.2606 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652306212102583D          

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  1 42  1  0  0  0  0
  1 43  1  0  0  0  0
  1 44  1  0  0  0  0
  4 48  1  0  0  0  0
  4 49  1  0  0  0  0
  4 50  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0043625

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(C([H])([H])[H])(C([H])([H])[H])[C@]1([H])OC2=C(C(=O)[C@@]3(C(=O)[C@@]([H])(C([H])([H])[H])C([H])([H])C([H])([H])[H])C(=O)[C@]2(C1([H])[H])C([H])([H])[C@]([H])(C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])[C@@]3(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C36H54O5/c1-12-25(8)29(37)36-30(38)27(18-16-24(6)7)31-35(32(36)39,21-28(41-31)33(9,10)40)20-26(17-15-23(4)5)34(36,11)19-13-14-22(2)3/h14-16,25-26,28,40H,12-13,17-21H2,1-11H3/t25-,26-,28+,34+,35-,36-/m0/s1

> <INCHI_KEY>
FBBDPYYKVMTRAB-MPEBUWIJSA-N

> <FORMULA>
C36H54O5

> <MOLECULAR_WEIGHT>
566.823

> <EXACT_MASS>
566.397124839

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
95

> <JCHEM_AVERAGE_POLARIZABILITY>
66.92350280426773

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,3R,8R,9R,10S)-3-(2-hydroxypropan-2-yl)-9-methyl-6,10-bis(3-methylbut-2-en-1-yl)-8-[(2S)-2-methylbutanoyl]-9-(4-methylpent-3-en-1-yl)-4-oxatricyclo[6.3.1.0^{1,5}]dodec-5-ene-7,12-dione

> <ALOGPS_LOGP>
6.23

> <JCHEM_LOGP>
8.601892883333331

> <ALOGPS_LOGS>
-5.79

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
19.742059676242985

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.306628586719086

> <JCHEM_PKA_STRONGEST_BASIC>
-3.10207995916606

> <JCHEM_POLAR_SURFACE_AREA>
80.67000000000002

> <JCHEM_REFRACTIVITY>
170.12100000000007

> <JCHEM_ROTATABLE_BOND_COUNT>
11

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
9.20e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,3R,8R,9R,10S)-3-(2-hydroxypropan-2-yl)-9-methyl-6,10-bis(3-methylbut-2-en-1-yl)-8-[(2S)-2-methylbutanoyl]-9-(4-methylpent-3-en-1-yl)-4-oxatricyclo[6.3.1.0^{1,5}]dodec-5-ene-7,12-dione

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 95 97  0  0  0  0  0  0  0  0999 V2000
    3.5697    2.6381   -0.4517 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.3898   -1.0494   -1.0476 C   0  0  1  0  0  0  0  0  0  0  0  0
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  4 49  1  0
  4 50  1  0
M  END

HEADER    PROTEIN                                 21-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   21-JUN-21         0                                  
HETATM    1  C   UNK     0       3.570   2.638  -0.452  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.229   1.255  -0.987  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.354   0.430  -0.028  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.111   0.070   1.253  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.904  -0.858  -0.740  0.00  0.00           C+0
HETATM    6  O   UNK     0       2.744  -1.727  -0.985  0.00  0.00           O+0
HETATM    7  C   UNK     0       0.390  -1.049  -1.048  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.202   0.281  -1.565  0.00  0.00           C+0
HETATM    9  O   UNK     0       0.316   0.903  -2.493  0.00  0.00           O+0
HETATM   10  C   UNK     0      -1.434   0.842  -0.918  0.00  0.00           C+0
HETATM   11  C   UNK     0      -1.781   2.277  -1.209  0.00  0.00           C+0
HETATM   12  C   UNK     0      -0.820   3.233  -0.550  0.00  0.00           C+0
HETATM   13  C   UNK     0      -0.997   3.945   0.581  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.080   4.874   1.079  0.00  0.00           C+0
HETATM   15  C   UNK     0      -2.224   3.906   1.448  0.00  0.00           C+0
HETATM   16  C   UNK     0      -2.134   0.037  -0.101  0.00  0.00           C+0
HETATM   17  O   UNK     0      -3.164   0.518   0.688  0.00  0.00           O+0
HETATM   18  C   UNK     0      -2.988  -0.182   1.942  0.00  0.00           C+0
HETATM   19  C   UNK     0      -4.308  -0.140   2.749  0.00  0.00           C+0
HETATM   20  C   UNK     0      -4.737   1.305   3.028  0.00  0.00           C+0
HETATM   21  C   UNK     0      -4.184  -0.907   4.066  0.00  0.00           C+0
HETATM   22  O   UNK     0      -5.356  -0.757   1.988  0.00  0.00           O+0
HETATM   23  C   UNK     0      -2.513  -1.582   1.557  0.00  0.00           C+0
HETATM   24  C   UNK     0      -1.797  -1.386   0.225  0.00  0.00           C+0
HETATM   25  C   UNK     0      -2.263  -2.420  -0.801  0.00  0.00           C+0
HETATM   26  C   UNK     0      -1.595  -2.310  -2.195  0.00  0.00           C+0
HETATM   27  C   UNK     0      -2.138  -3.453  -3.104  0.00  0.00           C+0
HETATM   28  C   UNK     0      -3.614  -3.318  -3.390  0.00  0.00           C+0
HETATM   29  C   UNK     0      -4.620  -4.105  -2.961  0.00  0.00           C+0
HETATM   30  C   UNK     0      -4.473  -5.291  -2.048  0.00  0.00           C+0
HETATM   31  C   UNK     0      -6.041  -3.827  -3.383  0.00  0.00           C+0
HETATM   32  C   UNK     0       0.011  -2.207  -2.105  0.00  0.00           C+0
HETATM   33  C   UNK     0       0.567  -3.588  -1.660  0.00  0.00           C+0
HETATM   34  C   UNK     0       0.518  -1.927  -3.573  0.00  0.00           C+0
HETATM   35  C   UNK     0       2.004  -1.648  -3.814  0.00  0.00           C+0
HETATM   36  C   UNK     0       2.277  -1.476  -5.287  0.00  0.00           C+0
HETATM   37  C   UNK     0       2.829  -2.369  -6.131  0.00  0.00           C+0
HETATM   38  C   UNK     0       3.068  -2.014  -7.575  0.00  0.00           C+0
HETATM   39  C   UNK     0       3.246  -3.765  -5.759  0.00  0.00           C+0
HETATM   40  C   UNK     0      -0.292  -1.416   0.278  0.00  0.00           C+0
HETATM   41  O   UNK     0       0.319  -1.702   1.304  0.00  0.00           O+0
HETATM   42  H   UNK     0       4.204   2.580   0.437  0.00  0.00           H+0
HETATM   43  H   UNK     0       2.663   3.194  -0.196  0.00  0.00           H+0
HETATM   44  H   UNK     0       4.114   3.210  -1.210  0.00  0.00           H+0
HETATM   45  H   UNK     0       4.159   0.717  -1.208  0.00  0.00           H+0
HETATM   46  H   UNK     0       2.719   1.377  -1.948  0.00  0.00           H+0
HETATM   47  H   UNK     0       1.471   1.008   0.261  0.00  0.00           H+0
HETATM   48  H   UNK     0       2.534  -0.616   1.879  0.00  0.00           H+0
HETATM   49  H   UNK     0       3.320   0.961   1.852  0.00  0.00           H+0
HETATM   50  H   UNK     0       4.065  -0.420   1.029  0.00  0.00           H+0
HETATM   51  H   UNK     0      -2.814   2.496  -0.923  0.00  0.00           H+0
HETATM   52  H   UNK     0      -1.759   2.450  -2.293  0.00  0.00           H+0
HETATM   53  H   UNK     0       0.119   3.352  -1.094  0.00  0.00           H+0
HETATM   54  H   UNK     0      -0.309   5.894   1.164  0.00  0.00           H+0
HETATM   55  H   UNK     0       0.431   4.552   2.064  0.00  0.00           H+0
HETATM   56  H   UNK     0       0.945   4.906   0.409  0.00  0.00           H+0
HETATM   57  H   UNK     0      -1.964   3.551   2.450  0.00  0.00           H+0
HETATM   58  H   UNK     0      -3.008   3.251   1.063  0.00  0.00           H+0
HETATM   59  H   UNK     0      -2.654   4.909   1.537  0.00  0.00           H+0
HETATM   60  H   UNK     0      -2.199   0.338   2.505  0.00  0.00           H+0
HETATM   61  H   UNK     0      -3.977   1.846   3.601  0.00  0.00           H+0
HETATM   62  H   UNK     0      -4.928   1.852   2.098  0.00  0.00           H+0
HETATM   63  H   UNK     0      -5.677   1.329   3.592  0.00  0.00           H+0
HETATM   64  H   UNK     0      -3.384  -0.501   4.694  0.00  0.00           H+0
HETATM   65  H   UNK     0      -5.122  -0.863   4.632  0.00  0.00           H+0
HETATM   66  H   UNK     0      -3.987  -1.970   3.893  0.00  0.00           H+0
HETATM   67  H   UNK     0      -5.383  -0.299   1.127  0.00  0.00           H+0
HETATM   68  H   UNK     0      -1.889  -2.015   2.346  0.00  0.00           H+0
HETATM   69  H   UNK     0      -3.370  -2.256   1.436  0.00  0.00           H+0
HETATM   70  H   UNK     0      -2.082  -3.427  -0.400  0.00  0.00           H+0
HETATM   71  H   UNK     0      -3.350  -2.328  -0.916  0.00  0.00           H+0
HETATM   72  H   UNK     0      -1.949  -1.374  -2.649  0.00  0.00           H+0
HETATM   73  H   UNK     0      -1.648  -3.440  -4.081  0.00  0.00           H+0
HETATM   74  H   UNK     0      -1.909  -4.428  -2.666  0.00  0.00           H+0
HETATM   75  H   UNK     0      -3.858  -2.484  -4.048  0.00  0.00           H+0
HETATM   76  H   UNK     0      -5.122  -5.173  -1.173  0.00  0.00           H+0
HETATM   77  H   UNK     0      -3.457  -5.431  -1.673  0.00  0.00           H+0
HETATM   78  H   UNK     0      -4.765  -6.207  -2.572  0.00  0.00           H+0
HETATM   79  H   UNK     0      -6.664  -3.625  -2.506  0.00  0.00           H+0
HETATM   80  H   UNK     0      -6.454  -4.692  -3.913  0.00  0.00           H+0
HETATM   81  H   UNK     0      -6.116  -2.962  -4.050  0.00  0.00           H+0
HETATM   82  H   UNK     0       1.657  -3.623  -1.640  0.00  0.00           H+0
HETATM   83  H   UNK     0       0.270  -4.382  -2.354  0.00  0.00           H+0
HETATM   84  H   UNK     0       0.213  -3.876  -0.666  0.00  0.00           H+0
HETATM   85  H   UNK     0      -0.067  -1.104  -4.005  0.00  0.00           H+0
HETATM   86  H   UNK     0       0.278  -2.802  -4.190  0.00  0.00           H+0
HETATM   87  H   UNK     0       2.623  -2.445  -3.396  0.00  0.00           H+0
HETATM   88  H   UNK     0       2.308  -0.717  -3.330  0.00  0.00           H+0
HETATM   89  H   UNK     0       2.001  -0.495  -5.674  0.00  0.00           H+0
HETATM   90  H   UNK     0       2.761  -0.989  -7.808  0.00  0.00           H+0
HETATM   91  H   UNK     0       2.504  -2.687  -8.230  0.00  0.00           H+0
HETATM   92  H   UNK     0       4.133  -2.105  -7.816  0.00  0.00           H+0
HETATM   93  H   UNK     0       2.939  -4.056  -4.751  0.00  0.00           H+0
HETATM   94  H   UNK     0       2.795  -4.488  -6.447  0.00  0.00           H+0
HETATM   95  H   UNK     0       4.334  -3.862  -5.822  0.00  0.00           H+0
CONECT    1    2   42   43   44                                             
CONECT    2    3    1   45   46                                             
CONECT    3    5    2    4   47                                             
CONECT    4    3   48   49   50                                             
CONECT    5    7    6    3                                                  
CONECT    6    5                                                            
CONECT    7   32    5    8   40                                             
CONECT    8   10    7    9                                                  
CONECT    9    8                                                            
CONECT   10    8   11   16                                                  
CONECT   11   12   10   51   52                                             
CONECT   12   11   13   53                                                  
CONECT   13   12   14   15                                                  
CONECT   14   13   54   55   56                                             
CONECT   15   13   57   58   59                                             
CONECT   16   24   10   17                                                  
CONECT   17   16   18                                                       
CONECT   18   19   17   23   60                                             
CONECT   19   18   20   21   22                                             
CONECT   20   19   61   62   63                                             
CONECT   21   19   64   65   66                                             
CONECT   22   19   67                                                       
CONECT   23   18   24   68   69                                             
CONECT   24   25   16   23   40                                             
CONECT   25   24   26   70   71                                             
CONECT   26   27   32   25   72                                             
CONECT   27   26   28   73   74                                             
CONECT   28   29   27   75                                                  
CONECT   29   28   30   31                                                  
CONECT   30   29   76   77   78                                             
CONECT   31   29   79   80   81                                             
CONECT   32    7   33   26   34                                             
CONECT   33   32   82   83   84                                             
CONECT   34   35   32   85   86                                             
CONECT   35   34   36   87   88                                             
CONECT   36   35   37   89                                                  
CONECT   37   36   38   39                                                  
CONECT   38   37   90   91   92                                             
CONECT   39   37   93   94   95                                             
CONECT   40   41   24    7                                                  
CONECT   41   40                                                            
CONECT   42    1                                                            
CONECT   43    1                                                            
CONECT   44    1                                                            
CONECT   45    2                                                            
CONECT   46    2                                                            
CONECT   47    3                                                            
CONECT   48    4                                                            
CONECT   49    4                                                            
CONECT   50    4                                                            
CONECT   51   11                                                            
CONECT   52   11                                                            
CONECT   53   12                                                            
CONECT   54   14                                                            
CONECT   55   14                                                            
CONECT   56   14                                                            
CONECT   57   15                                                            
CONECT   58   15                                                            
CONECT   59   15                                                            
CONECT   60   18                                                            
CONECT   61   20                                                            
CONECT   62   20                                                            
CONECT   63   20                                                            
CONECT   64   21                                                            
CONECT   65   21                                                            
CONECT   66   21                                                            
CONECT   67   22                                                            
CONECT   68   23                                                            
CONECT   69   23                                                            
CONECT   70   25                                                            
CONECT   71   25                                                            
CONECT   72   26                                                            
CONECT   73   27                                                            
CONECT   74   27                                                            
CONECT   75   28                                                            
CONECT   76   30                                                            
CONECT   77   30                                                            
CONECT   78   30                                                            
CONECT   79   31                                                            
CONECT   80   31                                                            
CONECT   81   31                                                            
CONECT   82   33                                                            
CONECT   83   33                                                            
CONECT   84   33                                                            
CONECT   85   34                                                            
CONECT   86   34                                                            
CONECT   87   35                                                            
CONECT   88   35                                                            
CONECT   89   36                                                            
CONECT   90   38                                                            
CONECT   91   38                                                            
CONECT   92   38                                                            
CONECT   93   39                                                            
CONECT   94   39                                                            
CONECT   95   39                                                            
MASTER        0    0    0    0    0    0    0    0   95    0  194    0
END

RDKit          3D

95 97  0  0  0  0  0  0  0  0999 V2000
    3.5697    2.6381   -0.4517 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2287    1.2553   -0.9867 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3545    0.4297   -0.0284 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1112    0.0695    1.2527 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9036   -0.8579   -0.7402 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7439   -1.7269   -0.9854 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3898   -1.0494   -1.0476 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.2019    0.2812   -1.5654 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3159    0.9025   -2.4925 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4339    0.8422   -0.9176 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7806    2.2772   -1.2093 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8203    3.2333   -0.5503 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9970    3.9448    0.5806 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0797    4.8740    1.0790 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2243    3.9058    1.4477 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1335    0.0374   -0.1007 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1638    0.5184    0.6880 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9884   -0.1816    1.9421 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.3083   -0.1396    2.7490 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.7372    1.3052    3.0283 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1843   -0.9068    4.0664 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3559   -0.7566    1.9880 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5125   -1.5822    1.5572 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7973   -1.3859    0.2249 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.2625   -2.4201   -0.8013 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5948   -2.3097   -2.1947 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1383   -3.4528   -3.1037 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6136   -3.3184   -3.3902 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6204   -4.1046   -2.9609 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4731   -5.2910   -2.0483 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0407   -3.8271   -3.3828 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0109   -2.2070   -2.1052 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.5669   -3.5883   -1.6603 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5175   -1.9273   -3.5731 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0039   -1.6483   -3.8141 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2773   -1.4757   -5.2869 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8294   -2.3688   -6.1313 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0682   -2.0141   -7.5754 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2459   -3.7649   -5.7587 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2919   -1.4156    0.2778 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3192   -1.7019    1.3039 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2041    2.5805    0.4374 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6632    3.1938   -0.1959 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1145    3.2099   -1.2098 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1589    0.7167   -1.2078 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7190    1.3770   -1.9480 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4714    1.0080    0.2606 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5335   -0.6162    1.8790 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3199    0.9611    1.8519 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0654   -0.4203    1.0289 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8144    2.4959   -0.9226 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7590    2.4500   -2.2929 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1186    3.3522   -1.0939 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3091    5.8941    1.1636 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4313    4.5517    2.0645 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9451    4.9061    0.4094 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9641    3.5509    2.4505 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0077    3.2514    1.0627 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6542    4.9089    1.5374 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1989    0.3383    2.5045 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9769    1.8463    3.6007 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9285    1.8517    2.0983 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6771    1.3294    3.5919 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3839   -0.5012    4.6937 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1224   -0.8630    4.6318 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9871   -1.9702    3.8926 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3829   -0.2987    1.1268 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8893   -2.0155    2.3463 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3696   -2.2560    1.4361 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0820   -3.4267   -0.4000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3503   -2.3278   -0.9161 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9490   -1.3739   -2.6493 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6483   -3.4401   -4.0809 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9090   -4.4276   -2.6661 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8583   -2.4837   -4.0485 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1216   -5.1734   -1.1733 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4573   -5.4305   -1.6734 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7646   -6.2069   -2.5725 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6641   -3.6250   -2.5056 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4539   -4.6916   -3.9127 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1157   -2.9618   -4.0498 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6569   -3.6230   -1.6404 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2695   -4.3817   -2.3536 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2129   -3.8757   -0.6661 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0671   -1.1044   -4.0049 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2776   -2.8021   -4.1898 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6233   -2.4447   -3.3964 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3075   -0.7168   -3.3297 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0005   -0.4946   -5.6740 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7613   -0.9890   -7.8083 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5041   -2.6866   -8.2299 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1325   -2.1049   -7.8162 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9387   -4.0555   -4.7514 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7946   -4.4877   -6.4470 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3344   -3.8625   -5.8221 H   0  0  0  0  0  0  0  0  0  0  0  0
  8 10  1  0
 34 35  1  0
 40 41  2  0
 35 36  1  0
  7 32  1  0
 24 25  1  6
 28 29  2  3
 11 12  1  0
 10 11  1  0
  7  5  1  1
 24 16  1  0
 32 33  1  1
 26 27  1  0
 27 28  1  0
 36 37  2  3
 29 30  1  0
 37 38  1  0
 37 39  1  0
  8  7  1  0
  5  6  2  0
 10 16  2  0
  5  3  1  0
 16 17  1  0
 18 19  1  0
 17 18  1  0
 19 20  1  0
 18 23  1  0
 19 21  1  0
 24 23  1  0
 19 22  1  6
 24 40  1  0
 18 60  1  1
 40  7  1  0
 12 13  2  3
 29 31  1  0
 13 14  1  0
 32 26  1  0
 13 15  1  0
 26 25  1  0
  3  2  1  0
  8  9  2  0
  2  1  1  0
 32 34  1  0
  3  4  1  0
 27 73  1  0
 27 74  1  0
 28 75  1  0
 30 76  1  0
 30 77  1  0
 30 78  1  0
 31 79  1  0
 31 80  1  0
 31 81  1  0
 11 51  1  0
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  4 49  1  0
  4 50  1  0
M  END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₆H₅₄O₅

Average Mass

566.8230 Da

Monoisotopic Mass

566.39712 Da

IUPAC Name

(1S,3R,8R,9R,10S)-3-(2-hydroxypropan-2-yl)-9-methyl-6,10-bis(3-methylbut-2-en-1-yl)-8-[(2S)-2-methylbutanoyl]-9-(4-methylpent-3-en-1-yl)-4-oxatricyclo[6.3.1.0^{1,5}]dodec-5-ene-7,12-dione

Traditional Name

(1S,3R,8R,9R,10S)-3-(2-hydroxypropan-2-yl)-9-methyl-6,10-bis(3-methylbut-2-en-1-yl)-8-[(2S)-2-methylbutanoyl]-9-(4-methylpent-3-en-1-yl)-4-oxatricyclo[6.3.1.0^{1,5}]dodec-5-ene-7,12-dione

CAS Registry Number

Not Available

SMILES

[H]OC(C([H])([H])[H])(C([H])([H])[H])[C@]1([H])OC2=C(C(=O)[C@@]3(C(=O)[C@@]([H])(C([H])([H])[H])C([H])([H])C([H])([H])[H])C(=O)[C@]2(C1([H])[H])C([H])([H])[C@]([H])(C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])[C@@]3(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]

InChI Identifier

InChI=1S/C36H54O5/c1-12-25(8)29(37)36-30(38)27(18-16-24(6)7)31-35(32(36)39,21-28(41-31)33(9,10)40)20-26(17-15-23(4)5)34(36,11)19-13-14-22(2)3/h14-16,25-26,28,40H,12-13,17-21H2,1-11H3/t25-,26-,28+,34+,35-,36-/m0/s1

InChI Key

FBBDPYYKVMTRAB-MPEBUWIJSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Hypericum cohaerens	JEOL database	Liu, X., et al, J. Nat. Prod. 76, 1612 (2013)
Hypericum perforatum var.angustifolium	Plant	KNApSAcK

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	6.23	ALOGPS
logP	8.6	ChemAxon
logS	-5.8	ALOGPS
pKa (Strongest Acidic)	14.31	ChemAxon
pKa (Strongest Basic)	-3.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	80.67 Å²	ChemAxon
Rotatable Bond Count	11	ChemAxon
Refractivity	170.12 m³·mol⁻¹	ChemAxon
Polarizability	66.92 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

Not Available

References

General References

Liu, X., et al. (2013). Liu, X., et al, J. Nat. Prod. 76, 1612 (2013). J. Nat. Prod..

Showing NP-Card for hypercohin F (NP0043625)

MOL for NP0043625 (hypercohin F)

3D MOL for NP0043625 (hypercohin F)

3D SDF for NP0043625 (hypercohin F)

3D-SDF for NP0043625 (hypercohin F)

PDB for NP0043625 (hypercohin F)

3D PDB for NP0043625 (hypercohin F)

SMILES for NP0043625 (hypercohin F)

INCHI for NP0043625 (hypercohin F)

Structure for NP0043625 (hypercohin F)

3D Structure for NP0043625 (hypercohin F)