NP-MRD: Showing NP-Card for wilsonol D (NP0043520)

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Record Information

Version

2.0

Created at

2021-06-21 00:54:25 UTC

Updated at

2021-06-30 00:19:14 UTC

NP-MRD ID

NP0043520

Secondary Accession Numbers

None

Natural Product Identification

Common Name

wilsonol D

Provided By

JEOL Database JEOL Logo

Description

wilsonol D is found in Cinnamomum wilsonii. wilsonol D was first documented in 2013 (Shu, P., et al.).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306212102543D          

 40 40  0  0  0  0            999 V2000
    1.3772    2.3106    3.7833 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4303    0.8151    4.0704 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.1071    0.2967    4.0382 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3190    0.0975    3.0878 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9883   -0.9604    2.3255 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9486   -1.6425    1.3632 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4709   -1.4756   -0.1092 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.2242   -0.0058   -0.4847 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.0159    0.1181   -1.8882 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2307   -2.3341   -0.4108 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4517   -3.8052   -0.0659 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2273   -4.5172   -0.2232 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9364   -3.9974    1.3714 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1845   -3.1534    1.7231 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4958   -3.3323    3.2271 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4145   -3.6949    0.9553 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9660    2.5088    2.7866 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7179    2.8125    4.5000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3701    2.7676    3.8458 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8220    0.6545    5.0804 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2472    0.4722    3.1503 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3345    0.4863    3.0289 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9870   -1.3808    2.4035 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9200   -1.1323    1.4435 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2698   -1.8326   -0.7722 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3360    0.3959    0.0128 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0806    0.6210   -0.2143 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8506   -0.1135   -2.3299 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3542   -1.9550    0.1304 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9641   -2.2582   -1.4728 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1718   -4.2463   -0.7637 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0877   -4.3659   -1.1310 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1121   -3.7598    2.0578 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1372   -5.0643    1.5398 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6398   -3.0724    3.8588 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3433   -2.7075    3.5307 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7527   -4.3737    3.4542 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3145   -3.1224    1.2072 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2931   -3.6522   -0.1300 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6080   -4.7426    1.2142 H   0  0  0  0  0  0  0  0  0  0  0  0
 14 16  1  6  0  0  0
 13 14  1  0  0  0  0
 11 12  1  0  0  0  0
 11 10  1  0  0  0  0
  7  8  1  0  0  0  0
 10  7  1  0  0  0  0
  6  5  1  0  0  0  0
  7  6  1  0  0  0  0
  5  4  2  0  0  0  0
  6 14  1  0  0  0  0
  4  2  1  0  0  0  0
  2  1  1  0  0  0  0
 14 15  1  0  0  0  0
  2  3  1  0  0  0  0
 13 11  1  0  0  0  0
  8  9  1  0  0  0  0
 13 33  1  0  0  0  0
 13 34  1  0  0  0  0
 11 31  1  6  0  0  0
 10 29  1  0  0  0  0
 10 30  1  0  0  0  0
  7 25  1  6  0  0  0
  6 24  1  6  0  0  0
 15 35  1  0  0  0  0
 15 36  1  0  0  0  0
 15 37  1  0  0  0  0
 16 38  1  0  0  0  0
 16 39  1  0  0  0  0
 16 40  1  0  0  0  0
 12 32  1  0  0  0  0
  8 26  1  0  0  0  0
  8 27  1  0  0  0  0
  5 23  1  0  0  0  0
  4 22  1  0  0  0  0
  2 20  1  1  0  0  0
  1 17  1  0  0  0  0
  1 18  1  0  0  0  0
  1 19  1  0  0  0  0
  3 21  1  0  0  0  0
  9 28  1  0  0  0  0
M  END

     RDKit          3D

 40 40  0  0  0  0  0  0  0  0999 V2000
    1.3772    2.3106    3.7833 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4303    0.8151    4.0704 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.1071    0.2967    4.0382 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3190    0.0975    3.0878 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9883   -0.9604    2.3255 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9486   -1.6425    1.3632 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4709   -1.4756   -0.1092 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.2242   -0.0058   -0.4847 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0159    0.1181   -1.8882 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2307   -2.3341   -0.4108 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4517   -3.8052   -0.0659 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2273   -4.5172   -0.2232 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9364   -3.9974    1.3714 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1845   -3.1534    1.7231 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4958   -3.3323    3.2271 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4145   -3.6949    0.9553 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9660    2.5088    2.7866 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7179    2.8125    4.5000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3701    2.7676    3.8458 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8220    0.6545    5.0804 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2472    0.4722    3.1503 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3345    0.4863    3.0289 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9870   -1.3808    2.4035 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9200   -1.1323    1.4435 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2698   -1.8326   -0.7722 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3360    0.3959    0.0128 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0806    0.6210   -0.2143 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8506   -0.1135   -2.3299 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3542   -1.9550    0.1304 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9641   -2.2582   -1.4728 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1718   -4.2463   -0.7637 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0877   -4.3659   -1.1310 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1121   -3.7598    2.0578 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1372   -5.0643    1.5398 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6398   -3.0724    3.8588 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3433   -2.7075    3.5307 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7527   -4.3737    3.4542 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3145   -3.1224    1.2072 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2931   -3.6522   -0.1300 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6080   -4.7426    1.2142 H   0  0  0  0  0  0  0  0  0  0  0  0
 14 16  1  6
 13 14  1  0
 11 12  1  0
 11 10  1  0
  7  8  1  0
 10  7  1  0
  6  5  1  0
  7  6  1  0
  5  4  2  0
  6 14  1  0
  4  2  1  0
  2  1  1  0
 14 15  1  0
  2  3  1  0
 13 11  1  0
  8  9  1  0
 13 33  1  0
 13 34  1  0
 11 31  1  6
 10 29  1  0
 10 30  1  0
  7 25  1  6
  6 24  1  6
 15 35  1  0
 15 36  1  0
 15 37  1  0
 16 38  1  0
 16 39  1  0
 16 40  1  0
 12 32  1  0
  8 26  1  0
  8 27  1  0
  5 23  1  0
  4 22  1  0
  2 20  1  1
  1 17  1  0
  1 18  1  0
  1 19  1  0
  3 21  1  0
  9 28  1  0
M  END


  Mrv1652306212102543D          

 40 40  0  0  0  0            999 V2000
    1.3772    2.3106    3.7833 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4303    0.8151    4.0704 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.1071    0.2967    4.0382 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3190    0.0975    3.0878 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9883   -0.9604    2.3255 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9486   -1.6425    1.3632 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4709   -1.4756   -0.1092 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.2242   -0.0058   -0.4847 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.0159    0.1181   -1.8882 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2307   -2.3341   -0.4108 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4517   -3.8052   -0.0659 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2273   -4.5172   -0.2232 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9364   -3.9974    1.3714 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1845   -3.1534    1.7231 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4958   -3.3323    3.2271 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4145   -3.6949    0.9553 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9660    2.5088    2.7866 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7179    2.8125    4.5000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3701    2.7676    3.8458 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8220    0.6545    5.0804 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2472    0.4722    3.1503 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3345    0.4863    3.0289 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9870   -1.3808    2.4035 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9200   -1.1323    1.4435 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2698   -1.8326   -0.7722 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3360    0.3959    0.0128 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0806    0.6210   -0.2143 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8506   -0.1135   -2.3299 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3542   -1.9550    0.1304 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9641   -2.2582   -1.4728 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1718   -4.2463   -0.7637 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0877   -4.3659   -1.1310 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1121   -3.7598    2.0578 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1372   -5.0643    1.5398 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6398   -3.0724    3.8588 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3433   -2.7075    3.5307 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7527   -4.3737    3.4542 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3145   -3.1224    1.2072 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2931   -3.6522   -0.1300 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6080   -4.7426    1.2142 H   0  0  0  0  0  0  0  0  0  0  0  0
 14 16  1  6  0  0  0
 13 14  1  0  0  0  0
 11 12  1  0  0  0  0
 11 10  1  0  0  0  0
  7  8  1  0  0  0  0
 10  7  1  0  0  0  0
  6  5  1  0  0  0  0
  7  6  1  0  0  0  0
  5  4  2  0  0  0  0
  6 14  1  0  0  0  0
  4  2  1  0  0  0  0
  2  1  1  0  0  0  0
 14 15  1  0  0  0  0
  2  3  1  0  0  0  0
 13 11  1  0  0  0  0
  8  9  1  0  0  0  0
 13 33  1  0  0  0  0
 13 34  1  0  0  0  0
 11 31  1  6  0  0  0
 10 29  1  0  0  0  0
 10 30  1  0  0  0  0
  7 25  1  6  0  0  0
  6 24  1  6  0  0  0
 15 35  1  0  0  0  0
 15 36  1  0  0  0  0
 15 37  1  0  0  0  0
 16 38  1  0  0  0  0
 16 39  1  0  0  0  0
 16 40  1  0  0  0  0
 12 32  1  0  0  0  0
  8 26  1  0  0  0  0
  8 27  1  0  0  0  0
  5 23  1  0  0  0  0
  4 22  1  0  0  0  0
  2 20  1  1  0  0  0
  1 17  1  0  0  0  0
  1 18  1  0  0  0  0
  1 19  1  0  0  0  0
  3 21  1  0  0  0  0
  9 28  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0043520

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC([H])([H])[C@]1([H])C([H])([H])[C@]([H])(O[H])C([H])([H])C(C([H])([H])[H])(C([H])([H])[H])[C@]1([H])C(\[H])=C(/[H])[C@]([H])(O[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C13H24O3/c1-9(15)4-5-12-10(8-14)6-11(16)7-13(12,2)3/h4-5,9-12,14-16H,6-8H2,1-3H3/b5-4+/t9-,10+,11+,12-/m1/s1

> <INCHI_KEY>
WEVMBOVJPQRPQV-OPKZNQTCSA-N

> <FORMULA>
C13H24O3

> <MOLECULAR_WEIGHT>
228.332

> <EXACT_MASS>
228.172544633

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
40

> <JCHEM_AVERAGE_POLARIZABILITY>
26.183041121797334

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,4R,5R)-4-[(1E,3R)-3-hydroxybut-1-en-1-yl]-5-(hydroxymethyl)-3,3-dimethylcyclohexan-1-ol

> <ALOGPS_LOGP>
1.06

> <JCHEM_LOGP>
0.7460925266666671

> <ALOGPS_LOGS>
-2.18

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.659072908530227

> <JCHEM_PKA_STRONGEST_ACIDIC>
15.02402731920747

> <JCHEM_PKA_STRONGEST_BASIC>
-1.9948247961852452

> <JCHEM_POLAR_SURFACE_AREA>
60.69

> <JCHEM_REFRACTIVITY>
65.76020000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.52e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,4R,5R)-4-[(1E,3R)-3-hydroxybut-1-en-1-yl]-5-(hydroxymethyl)-3,3-dimethylcyclohexan-1-ol

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 40 40  0  0  0  0  0  0  0  0999 V2000
    1.3772    2.3106    3.7833 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4303    0.8151    4.0704 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.1071    0.2967    4.0382 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3190    0.0975    3.0878 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9883   -0.9604    2.3255 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9486   -1.6425    1.3632 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4709   -1.4756   -0.1092 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.2242   -0.0058   -0.4847 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0159    0.1181   -1.8882 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2307   -2.3341   -0.4108 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4517   -3.8052   -0.0659 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2273   -4.5172   -0.2232 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9364   -3.9974    1.3714 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1845   -3.1534    1.7231 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4958   -3.3323    3.2271 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4145   -3.6949    0.9553 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9660    2.5088    2.7866 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7179    2.8125    4.5000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3701    2.7676    3.8458 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8220    0.6545    5.0804 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2472    0.4722    3.1503 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3345    0.4863    3.0289 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9870   -1.3808    2.4035 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9200   -1.1323    1.4435 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2698   -1.8326   -0.7722 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3360    0.3959    0.0128 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0806    0.6210   -0.2143 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8506   -0.1135   -2.3299 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3542   -1.9550    0.1304 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9641   -2.2582   -1.4728 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1718   -4.2463   -0.7637 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0877   -4.3659   -1.1310 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1121   -3.7598    2.0578 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1372   -5.0643    1.5398 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6398   -3.0724    3.8588 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3433   -2.7075    3.5307 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7527   -4.3737    3.4542 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3145   -3.1224    1.2072 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2931   -3.6522   -0.1300 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6080   -4.7426    1.2142 H   0  0  0  0  0  0  0  0  0  0  0  0
 14 16  1  6
 13 14  1  0
 11 12  1  0
 11 10  1  0
  7  8  1  0
 10  7  1  0
  6  5  1  0
  7  6  1  0
  5  4  2  0
  6 14  1  0
  4  2  1  0
  2  1  1  0
 14 15  1  0
  2  3  1  0
 13 11  1  0
  8  9  1  0
 13 33  1  0
 13 34  1  0
 11 31  1  6
 10 29  1  0
 10 30  1  0
  7 25  1  6
  6 24  1  6
 15 35  1  0
 15 36  1  0
 15 37  1  0
 16 38  1  0
 16 39  1  0
 16 40  1  0
 12 32  1  0
  8 26  1  0
  8 27  1  0
  5 23  1  0
  4 22  1  0
  2 20  1  1
  1 17  1  0
  1 18  1  0
  1 19  1  0
  3 21  1  0
  9 28  1  0
M  END

HEADER    PROTEIN                                 21-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   21-JUN-21         0                                  
HETATM    1  C   UNK     0       1.377   2.311   3.783  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.430   0.815   4.070  0.00  0.00           C+0
HETATM    3  O   UNK     0       0.107   0.297   4.038  0.00  0.00           O+0
HETATM    4  C   UNK     0       2.319   0.098   3.088  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.988  -0.960   2.325  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.949  -1.643   1.363  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.471  -1.476  -0.109  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.224  -0.006  -0.485  0.00  0.00           C+0
HETATM    9  O   UNK     0       2.016   0.118  -1.888  0.00  0.00           O+0
HETATM   10  C   UNK     0       1.231  -2.334  -0.411  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.452  -3.805  -0.066  0.00  0.00           C+0
HETATM   12  O   UNK     0       0.227  -4.517  -0.223  0.00  0.00           O+0
HETATM   13  C   UNK     0       1.936  -3.997   1.371  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.184  -3.153   1.723  0.00  0.00           C+0
HETATM   15  C   UNK     0       3.496  -3.332   3.227  0.00  0.00           C+0
HETATM   16  C   UNK     0       4.415  -3.695   0.955  0.00  0.00           C+0
HETATM   17  H   UNK     0       0.966   2.509   2.787  0.00  0.00           H+0
HETATM   18  H   UNK     0       0.718   2.813   4.500  0.00  0.00           H+0
HETATM   19  H   UNK     0       2.370   2.768   3.846  0.00  0.00           H+0
HETATM   20  H   UNK     0       1.822   0.655   5.080  0.00  0.00           H+0
HETATM   21  H   UNK     0      -0.247   0.472   3.150  0.00  0.00           H+0
HETATM   22  H   UNK     0       3.334   0.486   3.029  0.00  0.00           H+0
HETATM   23  H   UNK     0       0.987  -1.381   2.404  0.00  0.00           H+0
HETATM   24  H   UNK     0       3.920  -1.132   1.444  0.00  0.00           H+0
HETATM   25  H   UNK     0       3.270  -1.833  -0.772  0.00  0.00           H+0
HETATM   26  H   UNK     0       1.336   0.396   0.013  0.00  0.00           H+0
HETATM   27  H   UNK     0       3.081   0.621  -0.214  0.00  0.00           H+0
HETATM   28  H   UNK     0       2.851  -0.114  -2.330  0.00  0.00           H+0
HETATM   29  H   UNK     0       0.354  -1.955   0.130  0.00  0.00           H+0
HETATM   30  H   UNK     0       0.964  -2.258  -1.473  0.00  0.00           H+0
HETATM   31  H   UNK     0       2.172  -4.246  -0.764  0.00  0.00           H+0
HETATM   32  H   UNK     0      -0.088  -4.366  -1.131  0.00  0.00           H+0
HETATM   33  H   UNK     0       1.112  -3.760   2.058  0.00  0.00           H+0
HETATM   34  H   UNK     0       2.137  -5.064   1.540  0.00  0.00           H+0
HETATM   35  H   UNK     0       2.640  -3.072   3.859  0.00  0.00           H+0
HETATM   36  H   UNK     0       4.343  -2.708   3.531  0.00  0.00           H+0
HETATM   37  H   UNK     0       3.753  -4.374   3.454  0.00  0.00           H+0
HETATM   38  H   UNK     0       5.314  -3.122   1.207  0.00  0.00           H+0
HETATM   39  H   UNK     0       4.293  -3.652  -0.130  0.00  0.00           H+0
HETATM   40  H   UNK     0       4.608  -4.743   1.214  0.00  0.00           H+0
CONECT    1    2   17   18   19                                             
CONECT    2    4    1    3   20                                             
CONECT    3    2   21                                                       
CONECT    4    5    2   22                                                  
CONECT    5    6    4   23                                                  
CONECT    6    5    7   14   24                                             
CONECT    7    8   10    6   25                                             
CONECT    8    7    9   26   27                                             
CONECT    9    8   28                                                       
CONECT   10   11    7   29   30                                             
CONECT   11   12   10   13   31                                             
CONECT   12   11   32                                                       
CONECT   13   14   11   33   34                                             
CONECT   14   16   13    6   15                                             
CONECT   15   14   35   36   37                                             
CONECT   16   14   38   39   40                                             
CONECT   17    1                                                            
CONECT   18    1                                                            
CONECT   19    1                                                            
CONECT   20    2                                                            
CONECT   21    3                                                            
CONECT   22    4                                                            
CONECT   23    5                                                            
CONECT   24    6                                                            
CONECT   25    7                                                            
CONECT   26    8                                                            
CONECT   27    8                                                            
CONECT   28    9                                                            
CONECT   29   10                                                            
CONECT   30   10                                                            
CONECT   31   11                                                            
CONECT   32   12                                                            
CONECT   33   13                                                            
CONECT   34   13                                                            
CONECT   35   15                                                            
CONECT   36   15                                                            
CONECT   37   15                                                            
CONECT   38   16                                                            
CONECT   39   16                                                            
CONECT   40   16                                                            
MASTER        0    0    0    0    0    0    0    0   40    0   80    0
END

RDKit          3D

40 40  0  0  0  0  0  0  0  0999 V2000
    1.3772    2.3106    3.7833 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4303    0.8151    4.0704 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.1071    0.2967    4.0382 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3190    0.0975    3.0878 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9883   -0.9604    2.3255 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9486   -1.6425    1.3632 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4709   -1.4756   -0.1092 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.2242   -0.0058   -0.4847 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0159    0.1181   -1.8882 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2307   -2.3341   -0.4108 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4517   -3.8052   -0.0659 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2273   -4.5172   -0.2232 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9364   -3.9974    1.3714 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1845   -3.1534    1.7231 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4958   -3.3323    3.2271 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4145   -3.6949    0.9553 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9660    2.5088    2.7866 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7179    2.8125    4.5000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3701    2.7676    3.8458 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8220    0.6545    5.0804 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2472    0.4722    3.1503 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3345    0.4863    3.0289 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9870   -1.3808    2.4035 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9200   -1.1323    1.4435 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2698   -1.8326   -0.7722 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3360    0.3959    0.0128 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0806    0.6210   -0.2143 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8506   -0.1135   -2.3299 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3542   -1.9550    0.1304 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9641   -2.2582   -1.4728 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1718   -4.2463   -0.7637 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0877   -4.3659   -1.1310 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1121   -3.7598    2.0578 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1372   -5.0643    1.5398 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6398   -3.0724    3.8588 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3433   -2.7075    3.5307 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7527   -4.3737    3.4542 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3145   -3.1224    1.2072 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2931   -3.6522   -0.1300 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6080   -4.7426    1.2142 H   0  0  0  0  0  0  0  0  0  0  0  0
 14 16  1  6
 13 14  1  0
 11 12  1  0
 11 10  1  0
  7  8  1  0
 10  7  1  0
  6  5  1  0
  7  6  1  0
  5  4  2  0
  6 14  1  0
  4  2  1  0
  2  1  1  0
 14 15  1  0
  2  3  1  0
 13 11  1  0
  8  9  1  0
 13 33  1  0
 13 34  1  0
 11 31  1  6
 10 29  1  0
 10 30  1  0
  7 25  1  6
  6 24  1  6
 15 35  1  0
 15 36  1  0
 15 37  1  0
 16 38  1  0
 16 39  1  0
 16 40  1  0
 12 32  1  0
  8 26  1  0
  8 27  1  0
  5 23  1  0
  4 22  1  0
  2 20  1  1
  1 17  1  0
  1 18  1  0
  1 19  1  0
  3 21  1  0
  9 28  1  0
M  END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₃H₂₄O₃

Average Mass

228.3320 Da

Monoisotopic Mass

228.17254 Da

IUPAC Name

(1S,4R,5R)-4-[(1E,3R)-3-hydroxybut-1-en-1-yl]-5-(hydroxymethyl)-3,3-dimethylcyclohexan-1-ol

Traditional Name

(1S,4R,5R)-4-[(1E,3R)-3-hydroxybut-1-en-1-yl]-5-(hydroxymethyl)-3,3-dimethylcyclohexan-1-ol

CAS Registry Number

Not Available

SMILES

[H]OC([H])([H])[C@]1([H])C([H])([H])[C@]([H])(O[H])C([H])([H])C(C([H])([H])[H])(C([H])([H])[H])[C@]1([H])C(\[H])=C(/[H])[C@]([H])(O[H])C([H])([H])[H]

InChI Identifier

InChI=1S/C13H24O3/c1-9(15)4-5-12-10(8-14)6-11(16)7-13(12,2)3/h4-5,9-12,14-16H,6-8H2,1-3H3/b5-4+/t9-,10+,11+,12-/m1/s1

InChI Key

WEVMBOVJPQRPQV-OPKZNQTCSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Cinnamomum wilsonii	JEOL database	Shu, P., et al, J. Nat. Prod. 76, 1303 (2013)

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.06	ALOGPS
logP	0.75	ChemAxon
logS	-2.2	ALOGPS
pKa (Strongest Acidic)	15.02	ChemAxon
pKa (Strongest Basic)	-2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	60.69 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	65.76 m³·mol⁻¹	ChemAxon
Polarizability	26.18 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

Shu, P., et al. (2013). Shu, P., et al, J. Nat. Prod. 76, 1303 (2013). J. Nat. Prod..

Showing NP-Card for wilsonol D (NP0043520)

MOL for NP0043520 (wilsonol D)

3D MOL for NP0043520 (wilsonol D)

3D SDF for NP0043520 (wilsonol D)

3D-SDF for NP0043520 (wilsonol D)

PDB for NP0043520 (wilsonol D)

3D PDB for NP0043520 (wilsonol D)

SMILES for NP0043520 (wilsonol D)

INCHI for NP0043520 (wilsonol D)

Structure for NP0043520 (wilsonol D)

3D Structure for NP0043520 (wilsonol D)