NP-MRD: Showing NP-Card for kouitchenside D (NP0043494)

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Record Information

Version

2.0

Created at

2021-06-21 00:53:22 UTC

Updated at

2021-06-30 00:19:12 UTC

NP-MRD ID

NP0043494

Secondary Accession Numbers

None

Natural Product Identification

Common Name

kouitchenside D

Provided By

JEOL Database JEOL Logo

Description

CHEMBL2409390 belongs to the class of organic compounds known as xanthones. These are polycyclic aromatic compounds containing a xanthene moiety conjugated to a ketone group at carbon 9. Xanthene is a tricyclic compound made up of two benzene rings linearly fused to each other through a pyran ring. kouitchenside D is found in Swertia kouitchensis. kouitchenside D was first documented in 2013 (Wan, L. -S., et al.). Based on a literature review very few articles have been published on CHEMBL2409390.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306212102533D          

 74 78  0  0  0  0            999 V2000
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   -2.4524   -2.0244    2.6975 O   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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 21 22  1  0
 23 24  1  0
 25 26  1  0
 10 11  1  0
  2  1  1  0
 36 37  1  0
 41 42  1  0
 37 38  1  0
 12 11  1  0
  9 10  1  0
  7  6  1  0
  4 46  1  0
 42 74  1  0
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  1 43  1  0
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  1 45  1  0
 33 66  1  0
 33 67  1  0
 33 68  1  0
 12 51  1  6
 15 54  1  1
 16 55  1  0
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 20 59  1  0
 14 52  1  0
 14 53  1  0
  7 47  1  1
 21 60  1  6
 22 61  1  0
 23 62  1  1
 24 63  1  0
 25 64  1  6
 26 65  1  0
 10 49  1  0
 10 50  1  0
  9 48  1  1
 38 71  1  0
 38 72  1  0
 38 73  1  0
M  END


  Mrv1652306212102533D          

 74 78  0  0  0  0            999 V2000
   -2.5574   -2.7360    3.9249 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4524   -2.0244    2.6975 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2008   -1.6424    2.3028 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1565   -0.9469    1.0931 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0587   -0.4755    0.5834 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0830    0.1637   -0.6294 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5513    1.4522   -0.5664 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.9431    1.3115   -0.8579 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6438    2.5572   -0.7534 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.1533    2.2870   -0.8475 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.5906    1.2283    0.0162 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7247    1.5901    1.3949 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.4687    1.9069    1.9893 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5861    2.2355    3.3740 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.1442    1.0667    4.1814 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.3266    1.4407    5.5478 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.9302   -0.5601    4.2706 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3435    0.3608    2.0924 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.6403    0.0476    1.5561 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1542    3.4926   -1.8632 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.8078    4.7620   -1.8001 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6428    3.6912   -1.7092 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.1564    4.4744   -2.8126 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1087    2.3577   -1.6282 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4803    2.6679   -1.3343 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2499   -0.7314    1.2705 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5611   -0.2398    0.8078 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6254    0.6128   -0.0698 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7637   -0.7758    1.4896 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0670   -0.5662    1.0023 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2095    0.0926   -0.1878 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4901    0.6164   -0.5116 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1495   -1.0817    1.7232 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9485   -1.7858    2.9151 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6586   -1.9969    3.3996 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3575   -2.6776    4.5511 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4408   -3.1885    5.3170 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5638   -1.4936    2.6751 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3190   -1.7422    3.2099 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2087   -1.4429    2.4646 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0123   -1.8897    2.9875 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6161   -2.9548    4.0942 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.5901    2.5000    3.7454 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.8436    0.7102    5.9436 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2519    1.3809    3.7771 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6644   -0.9015    3.7197 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7210   -0.5266    1.9261 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5000   -0.0101    0.5887 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3651    3.0648   -2.8513 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2917    5.3401   -2.3996 H   0  0  0  0  0  0  0  0  0  0  0  0
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    0.8194    4.4049   -2.7513 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1037    1.8640   -2.6074 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9123    1.8327   -1.0262 H   0  0  0  0  0  0  0  0  0  0  0  0
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    6.3758    1.2606   -1.3888 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1830   -0.1879   -0.7781 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1712   -0.9645    1.3740 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8246   -2.1629    3.4332 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0224   -3.6874    6.1964 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0075   -3.9341    4.7497 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0903   -2.3808    5.6702 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0021   -2.4325    3.9274 H   0  0  0  0  0  0  0  0  0  0  0  0
 32 33  1  0  0  0  0
 42  3  2  0  0  0  0
 39 30  2  0  0  0  0
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 30 31  1  0  0  0  0
 31 34  2  0  0  0  0
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  5 27  1  0  0  0  0
 35 36  2  0  0  0  0
 12 19  1  0  0  0  0
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 17 15  1  0  0  0  0
 15 14  1  0  0  0  0
 14 13  1  0  0  0  0
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 17 18  1  0  0  0  0
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 36 39  1  0  0  0  0
  3  4  1  0  0  0  0
 28 29  2  0  0  0  0
 41 40  1  0  0  0  0
  5  6  1  0  0  0  0
 27 28  1  0  0  0  0
  3  2  1  0  0  0  0
 28 30  1  0  0  0  0
 31 32  1  0  0  0  0
 39 40  1  0  0  0  0
  7 25  1  0  0  0  0
 25 23  1  0  0  0  0
 23 21  1  0  0  0  0
 21  9  1  0  0  0  0
  9  8  1  0  0  0  0
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 23 24  1  0  0  0  0
 25 26  1  0  0  0  0
 10 11  1  0  0  0  0
  2  1  1  0  0  0  0
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 41 42  1  0  0  0  0
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 14 52  1  0  0  0  0
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  7 47  1  1  0  0  0
 21 60  1  6  0  0  0
 22 61  1  0  0  0  0
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 10 49  1  0  0  0  0
 10 50  1  0  0  0  0
  9 48  1  1  0  0  0
 38 71  1  0  0  0  0
 38 72  1  0  0  0  0
 38 73  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0043494

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@]1([H])C([H])([H])O[C@@]([H])(OC([H])([H])[C@@]2([H])O[C@@]([H])(OC3=C([H])C(OC([H])([H])[H])=C([H])C4=C3C(=O)C3=C(O4)C(OC([H])([H])[H])=C([H])C([H])=C3OC([H])([H])[H])[C@]([H])(O[H])[C@@]([H])(O[H])[C@]2([H])O[H])[C@]([H])(O[H])[C@@]1([H])O[H]

> <INCHI_IDENTIFIER>
InChI=1S/C27H32O15/c1-35-10-6-14-17(21(31)18-12(36-2)4-5-13(37-3)25(18)40-14)15(7-10)41-27-24(34)22(32)20(30)16(42-27)9-39-26-23(33)19(29)11(28)8-38-26/h4-7,11,16,19-20,22-24,26-30,32-34H,8-9H2,1-3H3/t11-,16-,19+,20-,22+,23-,24-,26+,27-/m1/s1

> <INCHI_KEY>
ZGNFNPROZXLZQC-IJEUNHHQSA-N

> <FORMULA>
C27H32O15

> <MOLECULAR_WEIGHT>
596.538

> <EXACT_MASS>
596.17412033

> <JCHEM_ACCEPTOR_COUNT>
14

> <JCHEM_ATOM_COUNT>
74

> <JCHEM_AVERAGE_POLARIZABILITY>
58.8891485734418

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3,5,8-trimethoxy-1-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-({[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}methyl)oxan-2-yl]oxy}-9H-xanthen-9-one

> <ALOGPS_LOGP>
-0.08

> <JCHEM_LOGP>
-1.2255076953333335

> <ALOGPS_LOGS>
-2.47

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.457132582041591

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.922598509696645

> <JCHEM_PKA_STRONGEST_BASIC>
-3.526580404084756

> <JCHEM_POLAR_SURFACE_AREA>
212.28999999999996

> <JCHEM_REFRACTIVITY>
136.78199999999995

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.02e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3,5,8-trimethoxy-1-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-({[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}methyl)oxan-2-yl]oxy}xanthen-9-one

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 74 78  0  0  0  0  0  0  0  0999 V2000
   -2.5574   -2.7360    3.9249 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4524   -2.0244    2.6975 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2008   -1.6424    2.3028 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1565   -0.9469    1.0931 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0587   -0.4755    0.5834 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0830    0.1637   -0.6294 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5513    1.4522   -0.5664 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.9431    1.3115   -0.8579 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6438    2.5572   -0.7534 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.1533    2.2870   -0.8475 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5906    1.2283    0.0162 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7247    1.5901    1.3949 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -4.3266    1.4407    5.5478 O   0  0  0  0  0  0  0  0  0  0  0  0
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    3.7637   -0.7758    1.4896 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0670   -0.5662    1.0023 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2095    0.0926   -0.1878 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4901    0.6164   -0.5116 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1495   -1.0817    1.7232 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9485   -1.7858    2.9151 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6586   -1.9969    3.3996 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3575   -2.6776    4.5511 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4408   -3.1885    5.3170 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.3190   -1.7422    3.2099 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2087   -1.4429    2.4646 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0123   -1.8897    2.9875 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6161   -2.9548    4.0942 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.6644   -0.9015    3.7197 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7210   -0.5266    1.9261 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5000   -0.0101    0.5887 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3651    3.0648   -2.8513 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2917    5.3401   -2.3996 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4366    4.2943   -0.8153 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8194    4.4049   -2.7513 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1037    1.8640   -2.6074 H   0  0  0  0  0  0  0  0  0  0  0  0
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    0.0021   -2.4325    3.9274 H   0  0  0  0  0  0  0  0  0  0  0  0
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 42  3  2  0
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  4  5  2  0
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 38 73  1  0
M  END

HEADER    PROTEIN                                 21-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   21-JUN-21         0                                  
HETATM    1  C   UNK     0      -2.557  -2.736   3.925  0.00  0.00           C+0
HETATM    2  O   UNK     0      -2.452  -2.024   2.697  0.00  0.00           O+0
HETATM    3  C   UNK     0      -1.201  -1.642   2.303  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.157  -0.947   1.093  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.059  -0.476   0.583  0.00  0.00           C+0
HETATM    6  O   UNK     0       0.083   0.164  -0.629  0.00  0.00           O+0
HETATM    7  C   UNK     0      -0.551   1.452  -0.566  0.00  0.00           C+0
HETATM    8  O   UNK     0      -1.943   1.312  -0.858  0.00  0.00           O+0
HETATM    9  C   UNK     0      -2.644   2.557  -0.753  0.00  0.00           C+0
HETATM   10  C   UNK     0      -4.153   2.287  -0.848  0.00  0.00           C+0
HETATM   11  O   UNK     0      -4.591   1.228   0.016  0.00  0.00           O+0
HETATM   12  C   UNK     0      -4.725   1.590   1.395  0.00  0.00           C+0
HETATM   13  O   UNK     0      -3.469   1.907   1.989  0.00  0.00           O+0
HETATM   14  C   UNK     0      -3.586   2.236   3.374  0.00  0.00           C+0
HETATM   15  C   UNK     0      -4.144   1.067   4.181  0.00  0.00           C+0
HETATM   16  O   UNK     0      -4.327   1.441   5.548  0.00  0.00           O+0
HETATM   17  C   UNK     0      -5.481   0.623   3.589  0.00  0.00           C+0
HETATM   18  O   UNK     0      -5.930  -0.560   4.271  0.00  0.00           O+0
HETATM   19  C   UNK     0      -5.343   0.361   2.092  0.00  0.00           C+0
HETATM   20  O   UNK     0      -6.640   0.048   1.556  0.00  0.00           O+0
HETATM   21  C   UNK     0      -2.154   3.493  -1.863  0.00  0.00           C+0
HETATM   22  O   UNK     0      -2.808   4.762  -1.800  0.00  0.00           O+0
HETATM   23  C   UNK     0      -0.643   3.691  -1.709  0.00  0.00           C+0
HETATM   24  O   UNK     0      -0.156   4.474  -2.813  0.00  0.00           O+0
HETATM   25  C   UNK     0       0.109   2.358  -1.628  0.00  0.00           C+0
HETATM   26  O   UNK     0       1.480   2.668  -1.334  0.00  0.00           O+0
HETATM   27  C   UNK     0       1.250  -0.731   1.270  0.00  0.00           C+0
HETATM   28  C   UNK     0       2.561  -0.240   0.808  0.00  0.00           C+0
HETATM   29  O   UNK     0       2.625   0.613  -0.070  0.00  0.00           O+0
HETATM   30  C   UNK     0       3.764  -0.776   1.490  0.00  0.00           C+0
HETATM   31  C   UNK     0       5.067  -0.566   1.002  0.00  0.00           C+0
HETATM   32  O   UNK     0       5.210   0.093  -0.188  0.00  0.00           O+0
HETATM   33  C   UNK     0       6.490   0.616  -0.512  0.00  0.00           C+0
HETATM   34  C   UNK     0       6.149  -1.082   1.723  0.00  0.00           C+0
HETATM   35  C   UNK     0       5.949  -1.786   2.915  0.00  0.00           C+0
HETATM   36  C   UNK     0       4.659  -1.997   3.400  0.00  0.00           C+0
HETATM   37  O   UNK     0       4.357  -2.678   4.551  0.00  0.00           O+0
HETATM   38  C   UNK     0       5.441  -3.188   5.317  0.00  0.00           C+0
HETATM   39  C   UNK     0       3.564  -1.494   2.675  0.00  0.00           C+0
HETATM   40  O   UNK     0       2.319  -1.742   3.210  0.00  0.00           O+0
HETATM   41  C   UNK     0       1.209  -1.443   2.465  0.00  0.00           C+0
HETATM   42  C   UNK     0      -0.012  -1.890   2.987  0.00  0.00           C+0
HETATM   43  H   UNK     0      -3.616  -2.955   4.094  0.00  0.00           H+0
HETATM   44  H   UNK     0      -2.022  -3.690   3.874  0.00  0.00           H+0
HETATM   45  H   UNK     0      -2.204  -2.128   4.765  0.00  0.00           H+0
HETATM   46  H   UNK     0      -2.080  -0.778   0.543  0.00  0.00           H+0
HETATM   47  H   UNK     0      -0.408   1.894   0.431  0.00  0.00           H+0
HETATM   48  H   UNK     0      -2.431   3.014   0.219  0.00  0.00           H+0
HETATM   49  H   UNK     0      -4.390   1.947  -1.862  0.00  0.00           H+0
HETATM   50  H   UNK     0      -4.741   3.193  -0.661  0.00  0.00           H+0
HETATM   51  H   UNK     0      -5.406   2.449   1.459  0.00  0.00           H+0
HETATM   52  H   UNK     0      -4.205   3.134   3.490  0.00  0.00           H+0
HETATM   53  H   UNK     0      -2.590   2.500   3.745  0.00  0.00           H+0
HETATM   54  H   UNK     0      -3.438   0.230   4.164  0.00  0.00           H+0
HETATM   55  H   UNK     0      -4.844   0.710   5.944  0.00  0.00           H+0
HETATM   56  H   UNK     0      -6.252   1.381   3.777  0.00  0.00           H+0
HETATM   57  H   UNK     0      -6.664  -0.902   3.720  0.00  0.00           H+0
HETATM   58  H   UNK     0      -4.721  -0.527   1.926  0.00  0.00           H+0
HETATM   59  H   UNK     0      -6.500  -0.010   0.589  0.00  0.00           H+0
HETATM   60  H   UNK     0      -2.365   3.065  -2.851  0.00  0.00           H+0
HETATM   61  H   UNK     0      -2.292   5.340  -2.400  0.00  0.00           H+0
HETATM   62  H   UNK     0      -0.437   4.294  -0.815  0.00  0.00           H+0
HETATM   63  H   UNK     0       0.819   4.405  -2.751  0.00  0.00           H+0
HETATM   64  H   UNK     0       0.104   1.864  -2.607  0.00  0.00           H+0
HETATM   65  H   UNK     0       1.912   1.833  -1.026  0.00  0.00           H+0
HETATM   66  H   UNK     0       6.891   1.230   0.303  0.00  0.00           H+0
HETATM   67  H   UNK     0       6.376   1.261  -1.389  0.00  0.00           H+0
HETATM   68  H   UNK     0       7.183  -0.188  -0.778  0.00  0.00           H+0
HETATM   69  H   UNK     0       7.171  -0.965   1.374  0.00  0.00           H+0
HETATM   70  H   UNK     0       6.825  -2.163   3.433  0.00  0.00           H+0
HETATM   71  H   UNK     0       5.022  -3.687   6.196  0.00  0.00           H+0
HETATM   72  H   UNK     0       6.008  -3.934   4.750  0.00  0.00           H+0
HETATM   73  H   UNK     0       6.090  -2.381   5.670  0.00  0.00           H+0
HETATM   74  H   UNK     0       0.002  -2.433   3.927  0.00  0.00           H+0
CONECT    1    2   43   44   45                                             
CONECT    2    3    1                                                       
CONECT    3   42    4    2                                                  
CONECT    4    5    3   46                                                  
CONECT    5    4   27    6                                                  
CONECT    6    5    7                                                       
CONECT    7   25    8    6   47                                             
CONECT    8    9    7                                                       
CONECT    9   21    8   10   48                                             
CONECT   10   11    9   49   50                                             
CONECT   11   10   12                                                       
CONECT   12   19   13   11   51                                             
CONECT   13   14   12                                                       
CONECT   14   15   13   52   53                                             
CONECT   15   17   14   16   54                                             
CONECT   16   15   55                                                       
CONECT   17   19   15   18   56                                             
CONECT   18   17   57                                                       
CONECT   19   12   17   20   58                                             
CONECT   20   19   59                                                       
CONECT   21   23    9   22   60                                             
CONECT   22   21   61                                                       
CONECT   23   25   21   24   62                                             
CONECT   24   23   63                                                       
CONECT   25    7   23   26   64                                             
CONECT   26   25   65                                                       
CONECT   27   41    5   28                                                  
CONECT   28   29   27   30                                                  
CONECT   29   28                                                            
CONECT   30   39   31   28                                                  
CONECT   31   30   34   32                                                  
CONECT   32   33   31                                                       
CONECT   33   32   66   67   68                                             
CONECT   34   31   35   69                                                  
CONECT   35   34   36   70                                                  
CONECT   36   35   39   37                                                  
CONECT   37   36   38                                                       
CONECT   38   37   71   72   73                                             
CONECT   39   30   36   40                                                  
CONECT   40   41   39                                                       
CONECT   41   27   40   42                                                  
CONECT   42    3   41   74                                                  
CONECT   43    1                                                            
CONECT   44    1                                                            
CONECT   45    1                                                            
CONECT   46    4                                                            
CONECT   47    7                                                            
CONECT   48    9                                                            
CONECT   49   10                                                            
CONECT   50   10                                                            
CONECT   51   12                                                            
CONECT   52   14                                                            
CONECT   53   14                                                            
CONECT   54   15                                                            
CONECT   55   16                                                            
CONECT   56   17                                                            
CONECT   57   18                                                            
CONECT   58   19                                                            
CONECT   59   20                                                            
CONECT   60   21                                                            
CONECT   61   22                                                            
CONECT   62   23                                                            
CONECT   63   24                                                            
CONECT   64   25                                                            
CONECT   65   26                                                            
CONECT   66   33                                                            
CONECT   67   33                                                            
CONECT   68   33                                                            
CONECT   69   34                                                            
CONECT   70   35                                                            
CONECT   71   38                                                            
CONECT   72   38                                                            
CONECT   73   38                                                            
CONECT   74   42                                                            
MASTER        0    0    0    0    0    0    0    0   74    0  156    0
END

RDKit          3D

74 78  0  0  0  0  0  0  0  0999 V2000
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   -1.1565   -0.9469    1.0931 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0587   -0.4755    0.5834 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0830    0.1637   -0.6294 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5513    1.4522   -0.5664 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.9431    1.3115   -0.8579 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.1533    2.2870   -0.8475 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5906    1.2283    0.0162 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.4687    1.9069    1.9893 O   0  0  0  0  0  0  0  0  0  0  0  0
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    3.7637   -0.7758    1.4896 C   0  0  0  0  0  0  0  0  0  0  0  0
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    5.2095    0.0926   -0.1878 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4901    0.6164   -0.5116 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1495   -1.0817    1.7232 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9485   -1.7858    2.9151 C   0  0  0  0  0  0  0  0  0  0  0  0
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    4.3575   -2.6776    4.5511 O   0  0  0  0  0  0  0  0  0  0  0  0
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    3.5638   -1.4936    2.6751 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3190   -1.7422    3.2099 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2087   -1.4429    2.4646 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0123   -1.8897    2.9875 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6161   -2.9548    4.0942 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.4314    3.0139    0.2192 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.5901    2.5000    3.7454 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4375    0.2297    4.1644 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8436    0.7102    5.9436 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2519    1.3809    3.7771 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6644   -0.9015    3.7197 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7210   -0.5266    1.9261 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5000   -0.0101    0.5887 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3651    3.0648   -2.8513 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2917    5.3401   -2.3996 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4366    4.2943   -0.8153 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8194    4.4049   -2.7513 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1037    1.8640   -2.6074 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9123    1.8327   -1.0262 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8907    1.2296    0.3027 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3758    1.2606   -1.3888 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1830   -0.1879   -0.7781 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1712   -0.9645    1.3740 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8246   -2.1629    3.4332 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0224   -3.6874    6.1964 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0075   -3.9341    4.7497 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0903   -2.3808    5.6702 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0021   -2.4325    3.9274 H   0  0  0  0  0  0  0  0  0  0  0  0
 32 33  1  0
 42  3  2  0
 39 30  2  0
 41 27  2  0
 30 31  1  0
 31 34  2  0
  4  5  2  0
 34 35  1  0
  5 27  1  0
 35 36  2  0
 12 19  1  0
 19 17  1  0
 17 15  1  0
 15 14  1  0
 14 13  1  0
 13 12  1  0
 15 16  1  0
 17 18  1  0
 19 20  1  0
 36 39  1  0
  3  4  1  0
 28 29  2  0
 41 40  1  0
  5  6  1  0
 27 28  1  0
  3  2  1  0
 28 30  1  0
 31 32  1  0
 39 40  1  0
  7 25  1  0
 25 23  1  0
 23 21  1  0
 21  9  1  0
  9  8  1  0
  8  7  1  0
 21 22  1  0
 23 24  1  0
 25 26  1  0
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  2  1  1  0
 36 37  1  0
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 37 38  1  0
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  9 10  1  0
  7  6  1  0
  4 46  1  0
 42 74  1  0
 34 69  1  0
 35 70  1  0
  1 43  1  0
  1 44  1  0
  1 45  1  0
 33 66  1  0
 33 67  1  0
 33 68  1  0
 12 51  1  6
 15 54  1  1
 16 55  1  0
 17 56  1  6
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 14 53  1  0
  7 47  1  1
 21 60  1  6
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 23 62  1  1
 24 63  1  0
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  9 48  1  1
 38 71  1  0
 38 72  1  0
 38 73  1  0
M  END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₇H₃₂O₁₅

Average Mass

596.5380 Da

Monoisotopic Mass

596.17412 Da

IUPAC Name

3,5,8-trimethoxy-1-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-({[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}methyl)oxan-2-yl]oxy}-9H-xanthen-9-one

Traditional Name

3,5,8-trimethoxy-1-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-({[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}methyl)oxan-2-yl]oxy}xanthen-9-one

CAS Registry Number

Not Available

SMILES

[H]O[C@]1([H])C([H])([H])O[C@@]([H])(OC([H])([H])[C@@]2([H])O[C@@]([H])(OC3=C([H])C(OC([H])([H])[H])=C([H])C4=C3C(=O)C3=C(O4)C(OC([H])([H])[H])=C([H])C([H])=C3OC([H])([H])[H])[C@]([H])(O[H])[C@@]([H])(O[H])[C@]2([H])O[H])[C@]([H])(O[H])[C@@]1([H])O[H]

InChI Identifier

InChI=1S/C27H32O15/c1-35-10-6-14-17(21(31)18-12(36-2)4-5-13(37-3)25(18)40-14)15(7-10)41-27-24(34)22(32)20(30)16(42-27)9-39-26-23(33)19(29)11(28)8-38-26/h4-7,11,16,19-20,22-24,26-30,32-34H,8-9H2,1-3H3/t11-,16-,19+,20-,22+,23-,24-,26+,27-/m1/s1

InChI Key

ZGNFNPROZXLZQC-IJEUNHHQSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Swertia kouitchensis	JEOL database	Wan, L. -S., et al, J. Nat. Prod. 76, 1238 (2013)

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as xanthones. These are polycyclic aromatic compounds containing a xanthene moiety conjugated to a ketone group at carbon 9. Xanthene is a tricyclic compound made up of two benzene rings linearly fused to each other through a pyran ring.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Benzopyrans

Sub Class

1-benzopyrans

Direct Parent

Xanthones

Alternative Parents

Substituents

Phenolic glycoside
Xanthone
Chromone
Disaccharide
Glycosyl compound
O-glycosyl compound
Anisole
Alkyl aryl ether
Pyranone
Benzenoid
Oxane
Pyran
Heteroaromatic compound
Vinylogous ester
Secondary alcohol
Oxacycle
Ether
Acetal
Polyol
Organooxygen compound
Alcohol
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.08	ALOGPS
logP	-1.2	ChemAxon
logS	-2.5	ALOGPS
pKa (Strongest Acidic)	11.92	ChemAxon
pKa (Strongest Basic)	-3.5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	14	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	212.29 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	136.78 m³·mol⁻¹	ChemAxon
Polarizability	58.89 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

30819953

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

71747860

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Wan, L. -S., et al. (2013). Wan, L. -S., et al, J. Nat. Prod. 76, 1238 (2013). J. Nat. Prod..

Showing NP-Card for kouitchenside D (NP0043494)

MOL for NP0043494 (kouitchenside D)

3D MOL for NP0043494 (kouitchenside D)

3D SDF for NP0043494 (kouitchenside D)

3D-SDF for NP0043494 (kouitchenside D)

PDB for NP0043494 (kouitchenside D)

3D PDB for NP0043494 (kouitchenside D)

SMILES for NP0043494 (kouitchenside D)

INCHI for NP0043494 (kouitchenside D)

Structure for NP0043494 (kouitchenside D)

3D Structure for NP0043494 (kouitchenside D)