NP-MRD: Showing NP-Card for vibsatin B (NP0042826)

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Record Information

Version

1.0

Created at

2021-06-21 00:23:47 UTC

Updated at

2021-06-30 00:18:09 UTC

NP-MRD ID

NP0042826

Secondary Accession Numbers

None

Natural Product Identification

Common Name

vibsatin B

Provided By

JEOL Database JEOL Logo

Description

vibsatin B is found in Viburnum tinus cv. variegatus. It was first documented in 2014 (Gao, X., et al.).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306212102233D          

 57 58  0  0  0  0            999 V2000
    2.3461    4.4105    0.9126 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1701    3.0411    0.3113 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0034    2.5724   -0.4652 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9215    2.2776    0.7278 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7726    0.9382   -0.0256 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7157    1.2179   -1.5232 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1743    2.2385   -1.9600 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3248    0.1532   -2.4572 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6175   -0.2367   -1.9726 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5417    0.7627   -3.8596 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5589    1.7716   -3.8066 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4396   -1.1117   -2.5116 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0017   -0.8697   -2.9562 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7559   -0.4721   -1.6901 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9417   -1.0409   -0.4883 C   0  0  1  0  0  0  0  0  0  0  0  0
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   -0.4580    0.1215    0.4669 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1190   -0.3994    1.8563 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7553   -0.0182    2.9699 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4087   -0.5321    4.2193 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7394    0.2652    5.2836 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.1126   -0.9594    8.9277 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5069    5.0478    0.6232 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2732    4.8586    0.5445 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4005    4.3282    2.0008 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0531    2.9209    0.5441 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0011    2.1083    1.8066 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6899    0.3678    0.1686 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2125    0.5219   -2.1633 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6378    1.2069   -4.2868 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9083   -0.0030   -4.5514 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1785    2.5323   -3.3237 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9237   -1.8304   -3.1860 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4228   -1.8076   -3.3412 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1093   -0.1241   -3.7478 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.2803   -2.7781   -0.4371 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0414   -2.8419   -1.3314 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1388   -1.8198   -0.5346 H   0  0  0  0  0  0  0  0  0  0  0  0
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    0.6919   -1.1219    1.9355 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.2625    1.2828    7.3780 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9173   -1.4668    9.4699 H   0  0  0  0  0  0  0  0  0  0  0  0
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    0.4133   -0.2972    9.6233 H   0  0  0  0  0  0  0  0  0  0  0  0
 21 22  1  0  0  0  0
  8 12  1  0  0  0  0
 22 24  1  0  0  0  0
 12 13  1  0  0  0  0
 24 25  2  3  0  0  0
 13 14  1  0  0  0  0
 25 26  1  0  0  0  0
 14 15  1  0  0  0  0
 15 17  1  0  0  0  0
 12 17  1  0  0  0  0
 15 18  1  0  0  0  0
  8  9  1  1  0  0  0
 18  5  1  0  0  0  0
  5  4  1  0  0  0  0
  8 10  1  0  0  0  0
 18 19  1  0  0  0  0
 10 11  1  0  0  0  0
  4  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  1  1  0  0  0  0
 19 20  2  0  0  0  0
 15 16  1  1  0  0  0
  5  6  1  0  0  0  0
 25 27  1  0  0  0  0
 20 21  1  0  0  0  0
 22 23  2  0  0  0  0
  6  8  1  0  0  0  0
  6  7  2  0  0  0  0
  5 33  1  6  0  0  0
 12 38  1  6  0  0  0
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  1 28  1  0  0  0  0
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 27 55  1  0  0  0  0
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 27 57  1  0  0  0  0
M  END

     RDKit          3D

 57 58  0  0  0  0  0  0  0  0999 V2000
    2.3461    4.4105    0.9126 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1701    3.0411    0.3113 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0034    2.5724   -0.4652 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9215    2.2776    0.7278 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7726    0.9382   -0.0256 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7157    1.2179   -1.5232 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1743    2.2385   -1.9600 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3248    0.1532   -2.4572 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6175   -0.2367   -1.9726 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5417    0.7627   -3.8596 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5589    1.7716   -3.8066 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4396   -1.1117   -2.5116 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0017   -0.8697   -2.9562 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7559   -0.4721   -1.6901 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9417   -1.0409   -0.4883 C   0  0  1  0  0  0  0  0  0  0  0  0
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   -1.4228   -1.8076   -3.3412 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1093   -0.1241   -3.7478 H   0  0  0  0  0  0  0  0  0  0  0  0
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 21 22  1  0
  8 12  1  0
 22 24  1  0
 12 13  1  0
 24 25  2  3
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 27 57  1  0
M  END


  Mrv1652306212102233D          

 57 58  0  0  0  0            999 V2000
    2.3461    4.4105    0.9126 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1701    3.0411    0.3113 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0034    2.5724   -0.4652 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9215    2.2776    0.7278 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7726    0.9382   -0.0256 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7157    1.2179   -1.5232 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.7559   -0.4721   -1.6901 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9417   -1.0409   -0.4883 C   0  0  1  0  0  0  0  0  0  0  0  0
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   -0.3148   -0.4552    6.5128 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6762   -0.1643    7.7782 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6356    0.9179    8.1933 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1126   -0.9594    8.9277 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5069    5.0478    0.6232 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2732    4.8586    0.5445 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4005    4.3282    2.0008 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0531    2.9209    0.5441 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0011    2.1083    1.8066 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6899    0.3678    0.1686 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2125    0.5219   -2.1633 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6378    1.2069   -4.2868 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9083   -0.0030   -4.5514 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1785    2.5323   -3.3237 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9237   -1.8304   -3.1860 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4228   -1.8076   -3.3412 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1093   -0.1241   -3.7478 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8652    0.6156   -1.6345 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7783   -0.8662   -1.7322 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6796   -1.5349    0.7532 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2930   -2.6192    1.0076 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2803   -2.7781   -0.4371 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0414   -2.8419   -1.3314 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1388   -1.8198   -0.5346 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3050    0.8165    0.5672 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6919   -1.1219    1.9355 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5797    0.6852    2.9875 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3692   -1.2791    6.3267 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0872    1.7646    8.6182 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3231    0.5383    8.9575 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2625    1.2828    7.3780 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9173   -1.4668    9.4699 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5982   -1.7240    8.5965 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4133   -0.2972    9.6233 H   0  0  0  0  0  0  0  0  0  0  0  0
 21 22  1  0  0  0  0
  8 12  1  0  0  0  0
 22 24  1  0  0  0  0
 12 13  1  0  0  0  0
 24 25  2  3  0  0  0
 13 14  1  0  0  0  0
 25 26  1  0  0  0  0
 14 15  1  0  0  0  0
 15 17  1  0  0  0  0
 12 17  1  0  0  0  0
 15 18  1  0  0  0  0
  8  9  1  1  0  0  0
 18  5  1  0  0  0  0
  5  4  1  0  0  0  0
  8 10  1  0  0  0  0
 18 19  1  0  0  0  0
 10 11  1  0  0  0  0
  4  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  1  1  0  0  0  0
 19 20  2  0  0  0  0
 15 16  1  1  0  0  0
  5  6  1  0  0  0  0
 25 27  1  0  0  0  0
 20 21  1  0  0  0  0
 22 23  2  0  0  0  0
  6  8  1  0  0  0  0
  6  7  2  0  0  0  0
  5 33  1  6  0  0  0
 12 38  1  6  0  0  0
 13 39  1  0  0  0  0
 13 40  1  0  0  0  0
 14 41  1  0  0  0  0
 14 42  1  0  0  0  0
 18 48  1  1  0  0  0
 19 49  1  0  0  0  0
 20 50  1  0  0  0  0
 24 51  1  0  0  0  0
 26 52  1  0  0  0  0
 26 53  1  0  0  0  0
 26 54  1  0  0  0  0
 17 46  1  0  0  0  0
 17 47  1  0  0  0  0
  9 34  1  0  0  0  0
  4 31  1  0  0  0  0
  4 32  1  0  0  0  0
 10 35  1  0  0  0  0
 10 36  1  0  0  0  0
 11 37  1  0  0  0  0
  1 28  1  0  0  0  0
  1 29  1  0  0  0  0
  1 30  1  0  0  0  0
 16 43  1  0  0  0  0
 16 44  1  0  0  0  0
 16 45  1  0  0  0  0
 27 55  1  0  0  0  0
 27 56  1  0  0  0  0
 27 57  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0042826

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC([H])([H])[C@@]1(O[H])C(=O)[C@@]([H])(C([H])([H])C(=O)C([H])([H])[H])[C@]([H])(C(\[H])=C(/[H])OC(=O)C([H])=C(C([H])([H])[H])C([H])([H])[H])[C@@]2(C([H])([H])[H])C([H])([H])C([H])([H])[C@]1([H])C2([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C21H30O6/c1-13(2)9-18(24)27-8-6-17-16(10-14(3)23)19(25)21(26,12-22)15-5-7-20(17,4)11-15/h6,8-9,15-17,22,26H,5,7,10-12H2,1-4H3/b8-6+/t15-,16+,17+,20+,21+/m1/s1

> <INCHI_KEY>
VSXXXICJCOSCLJ-UFTNWYTQSA-N

> <FORMULA>
C21H30O6

> <MOLECULAR_WEIGHT>
378.465

> <EXACT_MASS>
378.204238686

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
57

> <JCHEM_AVERAGE_POLARIZABILITY>
41.31524224612562

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(E)-2-[(1S,2S,3S,5R,6R)-5-hydroxy-5-(hydroxymethyl)-1-methyl-4-oxo-3-(2-oxopropyl)bicyclo[4.2.1]nonan-2-yl]ethenyl 3-methylbut-2-enoate

> <ALOGPS_LOGP>
1.51

> <JCHEM_LOGP>
2.3004409759999986

> <ALOGPS_LOGS>
-3.77

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.84983247999483

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.101911026795252

> <JCHEM_PKA_STRONGEST_BASIC>
-3.14499259239326

> <JCHEM_POLAR_SURFACE_AREA>
100.9

> <JCHEM_REFRACTIVITY>
101.60879999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
6.45e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(E)-2-[(1S,2S,3S,5R,6R)-5-hydroxy-5-(hydroxymethyl)-1-methyl-4-oxo-3-(2-oxopropyl)bicyclo[4.2.1]nonan-2-yl]ethenyl 3-methylbut-2-enoate

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 57 58  0  0  0  0  0  0  0  0999 V2000
    2.3461    4.4105    0.9126 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1701    3.0411    0.3113 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0034    2.5724   -0.4652 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9215    2.2776    0.7278 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7726    0.9382   -0.0256 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7157    1.2179   -1.5232 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1743    2.2385   -1.9600 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3248    0.1532   -2.4572 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6175   -0.2367   -1.9726 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5417    0.7627   -3.8596 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5589    1.7716   -3.8066 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4396   -1.1117   -2.5116 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0017   -0.8697   -2.9562 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7559   -0.4721   -1.6901 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9417   -1.0409   -0.4883 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.8479   -2.0470    0.2566 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2351   -1.7940   -1.1507 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4580    0.1215    0.4669 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1190   -0.3994    1.8563 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7553   -0.0182    2.9699 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4087   -0.5321    4.2193 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7394    0.2652    5.2836 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2629    1.3666    5.2448 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3148   -0.4552    6.5128 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6762   -0.1643    7.7782 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6356    0.9179    8.1933 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1126   -0.9594    8.9277 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5069    5.0478    0.6232 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2732    4.8586    0.5445 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4005    4.3282    2.0008 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0531    2.9209    0.5441 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0011    2.1083    1.8066 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6899    0.3678    0.1686 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2125    0.5219   -2.1633 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6378    1.2069   -4.2868 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9083   -0.0030   -4.5514 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1785    2.5323   -3.3237 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9237   -1.8304   -3.1860 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4228   -1.8076   -3.3412 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1093   -0.1241   -3.7478 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8652    0.6156   -1.6345 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7783   -0.8662   -1.7322 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6796   -1.5349    0.7532 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2930   -2.6192    1.0076 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2803   -2.7781   -0.4371 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0414   -2.8419   -1.3314 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1388   -1.8198   -0.5346 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3050    0.8165    0.5672 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6919   -1.1219    1.9355 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5797    0.6852    2.9875 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3692   -1.2791    6.3267 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0872    1.7646    8.6182 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3231    0.5383    8.9575 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2625    1.2828    7.3780 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9173   -1.4668    9.4699 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5982   -1.7240    8.5965 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4133   -0.2972    9.6233 H   0  0  0  0  0  0  0  0  0  0  0  0
 21 22  1  0
  8 12  1  0
 22 24  1  0
 12 13  1  0
 24 25  2  3
 13 14  1  0
 25 26  1  0
 14 15  1  0
 15 17  1  0
 12 17  1  0
 15 18  1  0
  8  9  1  1
 18  5  1  0
  5  4  1  0
  8 10  1  0
 18 19  1  0
 10 11  1  0
  4  2  1  0
  2  3  2  0
  2  1  1  0
 19 20  2  0
 15 16  1  1
  5  6  1  0
 25 27  1  0
 20 21  1  0
 22 23  2  0
  6  8  1  0
  6  7  2  0
  5 33  1  6
 12 38  1  6
 13 39  1  0
 13 40  1  0
 14 41  1  0
 14 42  1  0
 18 48  1  1
 19 49  1  0
 20 50  1  0
 24 51  1  0
 26 52  1  0
 26 53  1  0
 26 54  1  0
 17 46  1  0
 17 47  1  0
  9 34  1  0
  4 31  1  0
  4 32  1  0
 10 35  1  0
 10 36  1  0
 11 37  1  0
  1 28  1  0
  1 29  1  0
  1 30  1  0
 16 43  1  0
 16 44  1  0
 16 45  1  0
 27 55  1  0
 27 56  1  0
 27 57  1  0
M  END

HEADER    PROTEIN                                 21-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   21-JUN-21         0                                  
HETATM    1  C   UNK     0       2.346   4.410   0.913  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.170   3.041   0.311  0.00  0.00           C+0
HETATM    3  O   UNK     0       3.003   2.572  -0.465  0.00  0.00           O+0
HETATM    4  C   UNK     0       0.922   2.278   0.728  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.773   0.938  -0.026  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.716   1.218  -1.523  0.00  0.00           C+0
HETATM    7  O   UNK     0       0.174   2.239  -1.960  0.00  0.00           O+0
HETATM    8  C   UNK     0       1.325   0.153  -2.457  0.00  0.00           C+0
HETATM    9  O   UNK     0       2.618  -0.237  -1.973  0.00  0.00           O+0
HETATM   10  C   UNK     0       1.542   0.763  -3.860  0.00  0.00           C+0
HETATM   11  O   UNK     0       2.559   1.772  -3.807  0.00  0.00           O+0
HETATM   12  C   UNK     0       0.440  -1.112  -2.512  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.002  -0.870  -2.956  0.00  0.00           C+0
HETATM   14  C   UNK     0      -1.756  -0.472  -1.690  0.00  0.00           C+0
HETATM   15  C   UNK     0      -0.942  -1.041  -0.488  0.00  0.00           C+0
HETATM   16  C   UNK     0      -1.848  -2.047   0.257  0.00  0.00           C+0
HETATM   17  C   UNK     0       0.235  -1.794  -1.151  0.00  0.00           C+0
HETATM   18  C   UNK     0      -0.458   0.122   0.467  0.00  0.00           C+0
HETATM   19  C   UNK     0      -0.119  -0.399   1.856  0.00  0.00           C+0
HETATM   20  C   UNK     0      -0.755  -0.018   2.970  0.00  0.00           C+0
HETATM   21  O   UNK     0      -0.409  -0.532   4.219  0.00  0.00           O+0
HETATM   22  C   UNK     0      -0.739   0.265   5.284  0.00  0.00           C+0
HETATM   23  O   UNK     0      -1.263   1.367   5.245  0.00  0.00           O+0
HETATM   24  C   UNK     0      -0.315  -0.455   6.513  0.00  0.00           C+0
HETATM   25  C   UNK     0      -0.676  -0.164   7.778  0.00  0.00           C+0
HETATM   26  C   UNK     0      -1.636   0.918   8.193  0.00  0.00           C+0
HETATM   27  C   UNK     0      -0.113  -0.959   8.928  0.00  0.00           C+0
HETATM   28  H   UNK     0       1.507   5.048   0.623  0.00  0.00           H+0
HETATM   29  H   UNK     0       3.273   4.859   0.545  0.00  0.00           H+0
HETATM   30  H   UNK     0       2.401   4.328   2.001  0.00  0.00           H+0
HETATM   31  H   UNK     0       0.053   2.921   0.544  0.00  0.00           H+0
HETATM   32  H   UNK     0       1.001   2.108   1.807  0.00  0.00           H+0
HETATM   33  H   UNK     0       1.690   0.368   0.169  0.00  0.00           H+0
HETATM   34  H   UNK     0       3.212   0.522  -2.163  0.00  0.00           H+0
HETATM   35  H   UNK     0       0.638   1.207  -4.287  0.00  0.00           H+0
HETATM   36  H   UNK     0       1.908  -0.003  -4.551  0.00  0.00           H+0
HETATM   37  H   UNK     0       2.179   2.532  -3.324  0.00  0.00           H+0
HETATM   38  H   UNK     0       0.924  -1.830  -3.186  0.00  0.00           H+0
HETATM   39  H   UNK     0      -1.423  -1.808  -3.341  0.00  0.00           H+0
HETATM   40  H   UNK     0      -1.109  -0.124  -3.748  0.00  0.00           H+0
HETATM   41  H   UNK     0      -1.865   0.616  -1.635  0.00  0.00           H+0
HETATM   42  H   UNK     0      -2.778  -0.866  -1.732  0.00  0.00           H+0
HETATM   43  H   UNK     0      -2.680  -1.535   0.753  0.00  0.00           H+0
HETATM   44  H   UNK     0      -1.293  -2.619   1.008  0.00  0.00           H+0
HETATM   45  H   UNK     0      -2.280  -2.778  -0.437  0.00  0.00           H+0
HETATM   46  H   UNK     0      -0.041  -2.842  -1.331  0.00  0.00           H+0
HETATM   47  H   UNK     0       1.139  -1.820  -0.535  0.00  0.00           H+0
HETATM   48  H   UNK     0      -1.305   0.817   0.567  0.00  0.00           H+0
HETATM   49  H   UNK     0       0.692  -1.122   1.936  0.00  0.00           H+0
HETATM   50  H   UNK     0      -1.580   0.685   2.987  0.00  0.00           H+0
HETATM   51  H   UNK     0       0.369  -1.279   6.327  0.00  0.00           H+0
HETATM   52  H   UNK     0      -1.087   1.765   8.618  0.00  0.00           H+0
HETATM   53  H   UNK     0      -2.323   0.538   8.957  0.00  0.00           H+0
HETATM   54  H   UNK     0      -2.263   1.283   7.378  0.00  0.00           H+0
HETATM   55  H   UNK     0      -0.917  -1.467   9.470  0.00  0.00           H+0
HETATM   56  H   UNK     0       0.598  -1.724   8.597  0.00  0.00           H+0
HETATM   57  H   UNK     0       0.413  -0.297   9.623  0.00  0.00           H+0
CONECT    1    2   28   29   30                                             
CONECT    2    4    3    1                                                  
CONECT    3    2                                                            
CONECT    4    5    2   31   32                                             
CONECT    5   18    4    6   33                                             
CONECT    6    5    8    7                                                  
CONECT    7    6                                                            
CONECT    8   12    9   10    6                                             
CONECT    9    8   34                                                       
CONECT   10    8   11   35   36                                             
CONECT   11   10   37                                                       
CONECT   12    8   13   17   38                                             
CONECT   13   12   14   39   40                                             
CONECT   14   13   15   41   42                                             
CONECT   15   14   17   18   16                                             
CONECT   16   15   43   44   45                                             
CONECT   17   15   12   46   47                                             
CONECT   18   15    5   19   48                                             
CONECT   19   18   20   49                                                  
CONECT   20   19   21   50                                                  
CONECT   21   22   20                                                       
CONECT   22   21   24   23                                                  
CONECT   23   22                                                            
CONECT   24   22   25   51                                                  
CONECT   25   24   26   27                                                  
CONECT   26   25   52   53   54                                             
CONECT   27   25   55   56   57                                             
CONECT   28    1                                                            
CONECT   29    1                                                            
CONECT   30    1                                                            
CONECT   31    4                                                            
CONECT   32    4                                                            
CONECT   33    5                                                            
CONECT   34    9                                                            
CONECT   35   10                                                            
CONECT   36   10                                                            
CONECT   37   11                                                            
CONECT   38   12                                                            
CONECT   39   13                                                            
CONECT   40   13                                                            
CONECT   41   14                                                            
CONECT   42   14                                                            
CONECT   43   16                                                            
CONECT   44   16                                                            
CONECT   45   16                                                            
CONECT   46   17                                                            
CONECT   47   17                                                            
CONECT   48   18                                                            
CONECT   49   19                                                            
CONECT   50   20                                                            
CONECT   51   24                                                            
CONECT   52   26                                                            
CONECT   53   26                                                            
CONECT   54   26                                                            
CONECT   55   27                                                            
CONECT   56   27                                                            
CONECT   57   27                                                            
MASTER        0    0    0    0    0    0    0    0   57    0  116    0
END

RDKit          3D

57 58  0  0  0  0  0  0  0  0999 V2000
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   -1.1093   -0.1241   -3.7478 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8652    0.6156   -1.6345 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7783   -0.8662   -1.7322 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6796   -1.5349    0.7532 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2930   -2.6192    1.0076 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2803   -2.7781   -0.4371 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0414   -2.8419   -1.3314 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1388   -1.8198   -0.5346 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3050    0.8165    0.5672 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6919   -1.1219    1.9355 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5797    0.6852    2.9875 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3692   -1.2791    6.3267 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.3231    0.5383    8.9575 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2625    1.2828    7.3780 H   0  0  0  0  0  0  0  0  0  0  0  0
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    0.4133   -0.2972    9.6233 H   0  0  0  0  0  0  0  0  0  0  0  0
 21 22  1  0
  8 12  1  0
 22 24  1  0
 12 13  1  0
 24 25  2  3
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 25 26  1  0
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 12 17  1  0
 15 18  1  0
  8  9  1  1
 18  5  1  0
  5  4  1  0
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 18 19  1  0
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  4  2  1  0
  2  3  2  0
  2  1  1  0
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  5  6  1  0
 25 27  1  0
 20 21  1  0
 22 23  2  0
  6  8  1  0
  6  7  2  0
  5 33  1  6
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 13 39  1  0
 13 40  1  0
 14 41  1  0
 14 42  1  0
 18 48  1  1
 19 49  1  0
 20 50  1  0
 24 51  1  0
 26 52  1  0
 26 53  1  0
 26 54  1  0
 17 46  1  0
 17 47  1  0
  9 34  1  0
  4 31  1  0
  4 32  1  0
 10 35  1  0
 10 36  1  0
 11 37  1  0
  1 28  1  0
  1 29  1  0
  1 30  1  0
 16 43  1  0
 16 44  1  0
 16 45  1  0
 27 55  1  0
 27 56  1  0
 27 57  1  0
M  END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₁H₃₀O₆

Average Mass

378.4650 Da

Monoisotopic Mass

378.20424 Da

IUPAC Name

(E)-2-[(1S,2S,3S,5R,6R)-5-hydroxy-5-(hydroxymethyl)-1-methyl-4-oxo-3-(2-oxopropyl)bicyclo[4.2.1]nonan-2-yl]ethenyl 3-methylbut-2-enoate

Traditional Name

(E)-2-[(1S,2S,3S,5R,6R)-5-hydroxy-5-(hydroxymethyl)-1-methyl-4-oxo-3-(2-oxopropyl)bicyclo[4.2.1]nonan-2-yl]ethenyl 3-methylbut-2-enoate

CAS Registry Number

Not Available

SMILES

[H]OC([H])([H])[C@@]1(O[H])C(=O)[C@@]([H])(C([H])([H])C(=O)C([H])([H])[H])[C@]([H])(C(\[H])=C(/[H])OC(=O)C([H])=C(C([H])([H])[H])C([H])([H])[H])[C@@]2(C([H])([H])[H])C([H])([H])C([H])([H])[C@]1([H])C2([H])[H]

InChI Identifier

InChI=1S/C21H30O6/c1-13(2)9-18(24)27-8-6-17-16(10-14(3)23)19(25)21(26,12-22)15-5-7-20(17,4)11-15/h6,8-9,15-17,22,26H,5,7,10-12H2,1-4H3/b8-6+/t15-,16+,17+,20+,21+/m1/s1

InChI Key

VSXXXICJCOSCLJ-UFTNWYTQSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Viburnum tinus cv. variegatus	JEOL database	Gao, X., et al, Org. Lett. 16, 980 (2014)

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.51	ALOGPS
logP	2.3	ChemAxon
logS	-3.8	ALOGPS
pKa (Strongest Acidic)	12.1	ChemAxon
pKa (Strongest Basic)	-3.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	100.9 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	101.61 m³·mol⁻¹	ChemAxon
Polarizability	41.32 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

Gao, X., et al. (2014). Gao, X., et al, Org. Lett. 16, 980 (2014). Org. Lett..

Showing NP-Card for vibsatin B (NP0042826)

MOL for NP0042826 (vibsatin B)

3D MOL for NP0042826 (vibsatin B)

3D SDF for NP0042826 (vibsatin B)

3D-SDF for NP0042826 (vibsatin B)

PDB for NP0042826 (vibsatin B)

3D PDB for NP0042826 (vibsatin B)

SMILES for NP0042826 (vibsatin B)

INCHI for NP0042826 (vibsatin B)

Structure for NP0042826 (vibsatin B)

3D Structure for NP0042826 (vibsatin B)