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Record Information
Version1.0
Created at2021-06-21 00:23:39 UTC
Updated at2021-06-30 00:18:08 UTC
NP-MRD IDNP0042823
Secondary Accession NumbersNone
Natural Product Identification
Common Namemyrifabine
Provided ByJEOL DatabaseJEOL Logo
DescriptionMyrifabine belongs to the class of organic compounds known as pyridopyrimidines. Pyridopyrimidines are compounds containing a pyridopyrimidine, which consists of a pyridine fused to a pyrimidine. Pyridine is 6-membered ring consisting of five carbon atoms and a nitrogen atom. Pyrimidine is a 6-membered ring consisting of four carbon atoms and two nitrogen centers at the 1- and 3- ring positions. myrifabine is found in Myrioneuron faberi. It was first documented in 2014 (PMID: 24432813). Based on a literature review very few articles have been published on Myrifabine.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC35H55N5
Average Mass545.8600 Da
Monoisotopic Mass545.44575 Da
IUPAC Name(5S,6S,12S,15S,19S,20S,22S,23S)-23-[(2S,9S,13S,17R)-1,7-diazatetracyclo[7.7.1.0^{2,7}.0^{13,17}]heptadec-15-en-15-yl]-1,11,21-triazahexacyclo[17.3.1.0^{5,22}.0^{6,11}.0^{12,21}.0^{15,20}]tricosane
Traditional Name(5S,6S,12S,15S,19S,20S,22S,23S)-23-[(2S,9S,13S,17R)-1,7-diazatetracyclo[7.7.1.0^{2,7}.0^{13,17}]heptadec-15-en-15-yl]-1,11,21-triazahexacyclo[17.3.1.0^{5,22}.0^{6,11}.0^{12,21}.0^{15,20}]tricosane
CAS Registry NumberNot Available
SMILES
[H]C1=C(C([H])([H])[C@]2([H])C([H])([H])C([H])([H])C([H])([H])[C@@]3([H])C([H])([H])N4C([H])([H])C([H])([H])C([H])([H])C([H])([H])[C@]4([H])N1[C@]23[H])[C@@]1([H])N2C([H])([H])C([H])([H])C([H])([H])[C@]3([H])[C@]2([H])N2[C@]([H])(N4C([H])([H])C([H])([H])C([H])([H])C([H])([H])[C@@]34[H])C([H])([H])C([H])([H])[C@]3([H])C([H])([H])C([H])([H])C([H])([H])[C@@]1([H])[C@@]23[H]
InChI Identifier
InChI=1S/C35H55N5/c1-4-18-37-29(13-1)27-12-7-19-38-33(28-11-6-8-23-15-16-31(37)40(34(23)28)35(27)38)26-20-24-9-5-10-25-21-36-17-3-2-14-30(36)39(22-26)32(24)25/h22-25,27-35H,1-21H2/t23-,24-,25-,27-,28+,29-,30-,31-,32+,33+,34-,35-/m0/s1
InChI KeyZHVAOBWUOQGGLM-XNKZGHRNSA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 400 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 100 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 200 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 300 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 500 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 600 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 700 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 800 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 900 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 1000 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Mycetia faberiJEOL database
    • Cao, M.-M., et al, Org. Lett. 16, 528 (2014)
Chemical Taxonomy
Description Belongs to the class of organic compounds known as pyridopyrimidines. Pyridopyrimidines are compounds containing a pyridopyrimidine, which consists of a pyridine fused to a pyrimidine. Pyridine is 6-membered ring consisting of five carbon atoms and a nitrogen atom. Pyrimidine is a 6-membered ring consisting of four carbon atoms and two nitrogen centers at the 1- and 3- ring positions.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassPyridopyrimidines
Sub ClassNot Available
Direct ParentPyridopyrimidines
Alternative Parents
Substituents
  • Quinolidine
  • Pyridopyrimidine
  • Tetrahydropyridine
  • Pyrimidine
  • Pyridine
  • Piperidine
  • 1,3-diazinane
  • Azacycle
  • Enamine
  • Aminal
  • Organic nitrogen compound
  • Hydrocarbon derivative
  • Organonitrogen compound
  • Amine
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.73ALOGPS
logP5.96ChemAxon
logS-3.9ALOGPS
pKa (Strongest Basic)7.4ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area16.2 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity162.75 m³·mol⁻¹ChemAxon
Polarizability66.86 ųChemAxon
Number of Rings10ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID30830039
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound102222898
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Cao MM, Huang SD, Di YT, Yuan CM, Zuo GY, Gu YC, Zhang Y, Hao XJ: Myrifabine, the first dimeric Myrioneuron alkaloid from Myrioneuron faberi. Org Lett. 2014 Jan 17;16(2):528-31. doi: 10.1021/ol403408m. Epub 2013 Dec 26. [PubMed:24432813 ]
  2. Cao, M.-M., et al. (2014). Cao, M.-M., et al, Org. Lett. 16, 528 (2014). Org. Lett..