Np mrd loader

Record Information
Version2.0
Created at2021-06-21 00:20:46 UTC
Updated at2021-06-30 00:18:03 UTC
NP-MRD IDNP0042768
Secondary Accession NumbersNone
Natural Product Identification
Common Namegambieroxide
Provided ByJEOL DatabaseJEOL Logo
Description gambieroxide is found in Gambierdiscus toxicus GTP2 strain. gambieroxide was first documented in 2013 (Watanabe, R., et al.).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC60H90O22S
Average Mass1195.4200 Da
Monoisotopic Mass1194.56445 Da
IUPAC Name[(1R,2S)-2,3-dihydroxy-1-[(1S,3R,5S,7R,9S,11R,13S,16S,18R,19R,20S,22R,23S,26S,28R,31S,33R,35S,37R,39R,40S,42S,43S,45R,47S,49R,51S,53R)-19,39,43-trihydroxy-18,23,26,28,45-pentamethyl-13-[(2R,3S)-2-methyl-3-(2-methylidenepent-4-en-1-yl)oxiran-2-yl]-14-methylidene-4,8,12,17,21,27,32,36,41,46,50,54-dodecaoxadodecacyclo[26.26.0.0^{3,26}.0^{5,22}.0^{7,20}.0^{9,18}.0^{11,16}.0^{31,53}.0^{33,51}.0^{35,49}.0^{37,47}.0^{40,45}]tetrapentacontan-42-yl]propoxy]sulfonic acid
Traditional Name(1R,2S)-2,3-dihydroxy-1-[(1S,3R,5S,7R,9S,11R,13S,16S,18R,19R,20S,22R,23S,26S,28R,31S,33R,35S,37R,39R,40S,42S,43S,45R,47S,49R,51S,53R)-19,39,43-trihydroxy-18,23,26,28,45-pentamethyl-13-[(2R,3S)-2-methyl-3-(2-methylidenepent-4-en-1-yl)oxiran-2-yl]-14-methylidene-4,8,12,17,21,27,32,36,41,46,50,54-dodecaoxadodecacyclo[26.26.0.0^{3,26}.0^{5,22}.0^{7,20}.0^{9,18}.0^{11,16}.0^{31,53}.0^{33,51}.0^{35,49}.0^{37,47}.0^{40,45}]tetrapentacontan-42-yl]propoxysulfonic acid
CAS Registry NumberNot Available
SMILES
[H]OC([H])([H])[C@]([H])(O[H])[C@@]([H])(O[S](=O)(=O)O[H])[C@@]1([H])O[C@@]2([H])[C@]([H])(O[H])C([H])([H])[C@@]3([H])O[C@@]4([H])C([H])([H])[C@@]5([H])O[C@@]6([H])C([H])([H])C([H])([H])[C@]7(O[C@@]8(C([H])([H])[H])C([H])([H])C([H])([H])[C@]([H])(C([H])([H])[H])[C@@]9([H])O[C@]%10([H])[C@]([H])(O[C@@]%11([H])C([H])([H])[C@@]%12([H])O[C@@]([H])(C(=C([H])[H])C([H])([H])[C@]%12([H])O[C@]%11(C([H])([H])[H])[C@]%10([H])O[H])[C@@]%10(O[C@@]%10([H])C([H])([H])C(=C([H])[H])C([H])([H])C([H])=C([H])[H])C([H])([H])[H])C([H])([H])[C@]9([H])O[C@]8([H])C([H])([H])[C@]7([H])O[C@]6([H])C([H])([H])[C@]5([H])O[C@]4([H])C([H])([H])[C@]3([H])O[C@]2(C([H])([H])[H])C([H])([H])[C@]1([H])O[H])C([H])([H])[H]
InChI Identifier
InChI=1S/C60H90O22S/c1-10-11-27(2)16-48-60(9,80-48)54-29(4)17-41-40(75-54)23-47-59(8,79-41)53(65)52-44(74-47)22-43-49(76-52)28(3)12-14-56(5)46(73-43)24-45-57(6,82-56)15-13-33-35(72-45)19-37-36(69-33)20-38-39(71-37)21-42-34(70-38)18-30(62)55-58(7,78-42)25-31(63)50(77-55)51(32(64)26-61)81-83(66,67)68/h10,28,30-55,61-65H,1-2,4,11-26H2,3,5-9H3,(H,66,67,68)/t28-,30+,31-,32-,33-,34+,35+,36+,37-,38-,39+,40+,41-,42-,43-,44+,45-,46+,47-,48-,49+,50-,51+,52+,53+,54-,55-,56-,57+,58+,59-,60+/m0/s1
InChI KeyBICJKLANYHNSGD-MYZMBQTRSA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 800 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 100 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 200 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 300 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 400 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 500 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 600 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 700 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 900 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 1000 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Gambierdiscus toxicus GTP2 strainJEOL database
    • Watanabe, R., et. al, Tetrahedron 69, 10299 (2013)
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1.57ALOGPS
logP-0.2ChemAxon
logS-3.9ALOGPS
pKa (Strongest Acidic)-1.7ChemAxon
pKa (Strongest Basic)-3ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count21ChemAxon
Hydrogen Donor Count6ChemAxon
Polar Surface Area288.04 ŲChemAxon
Rotatable Bond Count10ChemAxon
Refractivity288.79 m³·mol⁻¹ChemAxon
Polarizability131.46 ųChemAxon
Number of Rings13ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
External LinksNot Available
References
General References
  1. Watanabe, R., et al. (2013). Watanabe, R., et. al, Tetrahedron 69, 10299 (2013). Tetrahedron.