Np mrd loader

Record Information
Version1.0
Created at2021-06-21 00:20:17 UTC
Updated at2021-06-30 00:18:02 UTC
NP-MRD IDNP0042757
Secondary Accession NumbersNone
Natural Product Identification
Common Namepyrrolizilactone
Provided ByJEOL DatabaseJEOL Logo
DescriptionPyrrolizilactone belongs to the class of organic compounds known as pyrrolizidinones. Pyrrolizidinones are compounds containing a pyrrolizidine moiety which bears a ketone. Pyrrolizidine is a bicyclic ring system made up of two fused pyrrolidine ring sharing a nitrogen atom. pyrrolizilactone is found in fungal strain RKB3564. It was first documented in 2013 (PMID: 24166831). Based on a literature review very few articles have been published on Pyrrolizilactone (PMID: 23715039).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC24H33NO5
Average Mass415.5300 Da
Monoisotopic Mass415.23587 Da
IUPAC Name(3R,4S,7R,10R)-3-[(1S,2S,4aR,6S,8R,8aR)-2,3,4a,6,8-pentamethyl-1,2,4a,5,6,7,8,8a-octahydronaphthalene-1-carbonyl]-10-hydroxy-5-oxa-1-azatricyclo[5.2.1.0^{4,10}]decane-2,6-dione
Traditional Name(3R,4S,7R,10R)-3-[(1S,2S,4aR,6S,8R,8aR)-2,3,4a,6,8-pentamethyl-2,5,6,7,8,8a-hexahydro-1H-naphthalene-1-carbonyl]-10-hydroxy-5-oxa-1-azatricyclo[5.2.1.0^{4,10}]decane-2,6-dione
CAS Registry NumberNot Available
SMILES
[H]O[C@@]12N3C(=O)[C@@]([H])(C(=O)[C@@]4([H])[C@@]([H])(C(=C([H])[C@]5(C([H])([H])[H])C([H])([H])[C@@]([H])(C([H])([H])[H])C([H])([H])[C@@]([H])(C([H])([H])[H])[C@]45[H])C([H])([H])[H])C([H])([H])[H])[C@]1([H])OC(=O)[C@]2([H])C([H])([H])C3([H])[H]
InChI Identifier
InChI=1S/C24H33NO5/c1-11-8-12(2)18-16(14(4)13(3)10-23(18,5)9-11)19(26)17-20-24(29)15(22(28)30-20)6-7-25(24)21(17)27/h10-12,14-18,20,29H,6-9H2,1-5H3/t11-,12+,14+,15-,16-,17-,18+,20-,23-,24+/m0/s1
InChI KeyJBKBXMQKJLCRKG-BLRGGNKRSA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 500 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 100 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 200 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 300 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 400 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 600 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 700 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 800 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 900 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 1000 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
fungal strain RKB3564JEOL database
    • Nogawa, T., et. al, J. Antibiotics, 66, 621 (2013)
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.19ALOGPS
logP3.26ChemAxon
logS-3.7ALOGPS
pKa (Strongest Acidic)11.68ChemAxon
pKa (Strongest Basic)-4.3ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area83.91 ŲChemAxon
Rotatable Bond Count2ChemAxon
Refractivity110.7 m³·mol⁻¹ChemAxon
Polarizability45.06 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound72707242
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Futamura Y, Kawatani M, Muroi M, Aono H, Nogawa T, Osada H: Identification of a molecular target of a novel fungal metabolite, pyrrolizilactone, by phenotypic profiling systems. Chembiochem. 2013 Dec 16;14(18):2456-63. doi: 10.1002/cbic.201300499. Epub 2013 Oct 25. [PubMed:24166831 ]
  2. Nogawa T, Kawatani M, Uramoto M, Okano A, Aono H, Futamura Y, Koshino H, Takahashi S, Osada H: Pyrrolizilactone, a new pyrrolizidinone metabolite produced by a fungus. J Antibiot (Tokyo). 2013 Oct;66(10):621-3. doi: 10.1038/ja.2013.55. Epub 2013 May 29. [PubMed:23715039 ]
  3. Nogawa, T., et al. (2013). Nogawa, T., et. al, J. Antibiotics, 66, 621 (2013). J. Antibiotics.