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Record Information
Version2.0
Created at2021-06-20 23:44:44 UTC
Updated at2021-06-30 00:16:47 UTC
NP-MRD IDNP0041959
Secondary Accession NumbersNone
Natural Product Identification
Common Namegarcihombronane L
Provided ByJEOL DatabaseJEOL Logo
DescriptionMethyl (2E,4R,6R)-6-[(1S,2S,5R,7S,14S,15S)-1,5-dihydroxy-2,6,6,14,15-pentamethyl-12-oxotetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]Heptadec-10-en-14-yl]-4-hydroxy-2-methylhept-2-enoate belongs to the class of organic compounds known as dihydroxy bile acids, alcohols and derivatives. Dihydroxy bile acids, alcohols and derivatives are compounds containing or derived from a bile acid or alcohol, and which bears exactly two carboxylic acid groups. garcihombronane L is found in Garcinia hombroniana. garcihombronane L was first documented in 2013 (Klaiklay, S., et al.). Based on a literature review very few articles have been published on methyl (2E,4R,6R)-6-[(1S,2S,5R,7S,14S,15S)-1,5-dihydroxy-2,6,6,14,15-pentamethyl-12-oxotetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]Heptadec-10-en-14-yl]-4-hydroxy-2-methylhept-2-enoate.
Structure
Thumb
Synonyms
ValueSource
Methyl (2E,4R,6R)-6-[(1S,2S,5R,7S,14S,15S)-1,5-dihydroxy-2,6,6,14,15-pentamethyl-12-oxotetracyclo[8.7.0.0,.0,]heptadec-10-en-14-yl]-4-hydroxy-2-methylhept-2-enoic acidGenerator
Chemical FormulaC31H48O6
Average Mass516.7190 Da
Monoisotopic Mass516.34509 Da
IUPAC Namemethyl (2E,4R,6R)-6-[(1S,2S,5R,7S,14S,15S)-1,5-dihydroxy-2,6,6,14,15-pentamethyl-12-oxotetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-10-en-14-yl]-4-hydroxy-2-methylhept-2-enoate
Traditional Namemethyl (2E,4R,6R)-6-[(1S,2S,5R,7S,14S,15S)-1,5-dihydroxy-2,6,6,14,15-pentamethyl-12-oxotetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-10-en-14-yl]-4-hydroxy-2-methylhept-2-enoate
CAS Registry NumberNot Available
SMILES
[H]O[C@@]([H])(C(\[H])=C(\C(=O)OC([H])([H])[H])C([H])([H])[H])C([H])([H])[C@@]([H])(C([H])([H])[H])[C@]1(C([H])([H])[H])C([H])([H])C(=O)C2=C3C([H])([H])C([H])([H])[C@@]4([H])C(C([H])([H])[H])(C([H])([H])[H])[C@]([H])(O[H])C([H])([H])C([H])([H])[C@]4(C([H])([H])[H])[C@@]3(O[H])C([H])([H])C([H])([H])[C@@]12C([H])([H])[H]
InChI Identifier
InChI=1S/C31H48O6/c1-18(26(35)37-8)15-20(32)16-19(2)30(7)17-22(33)25-21-9-10-23-27(3,4)24(34)11-12-28(23,5)31(21,36)14-13-29(25,30)6/h15,19-20,23-24,32,34,36H,9-14,16-17H2,1-8H3/b18-15+/t19-,20+,23+,24-,28+,29-,30+,31-/m1/s1
InChI KeyKBXSUISTRQPBIX-FAQJMFMZSA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 500 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 100 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 200 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 300 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 400 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 600 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 700 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 800 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 900 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 1000 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Garcinia hombronianaJEOL database
    • Klaiklay, S., et al, Phytochemistry 85, 161 (2013)
Chemical Taxonomy
Description Belongs to the class of organic compounds known as dihydroxy bile acids, alcohols and derivatives. Dihydroxy bile acids, alcohols and derivatives are compounds containing or derived from a bile acid or alcohol, and which bears exactly two carboxylic acid groups.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSteroids and steroid derivatives
Sub ClassBile acids, alcohols and derivatives
Direct ParentDihydroxy bile acids, alcohols and derivatives
Alternative Parents
Substituents
  • Dihydroxy bile acid, alcohol, or derivatives
  • 23-hydroxysteroid
  • 3-hydroxysteroid
  • Hydroxysteroid
  • 15-oxosteroid
  • Oxosteroid
  • 3-alpha-hydroxysteroid
  • Cyclic alcohol
  • Alpha,beta-unsaturated carboxylic ester
  • Enoate ester
  • Methyl ester
  • Tertiary alcohol
  • Ketone
  • Carboxylic acid ester
  • Secondary alcohol
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Alcohol
  • Hydrocarbon derivative
  • Organic oxide
  • Organic oxygen compound
  • Organooxygen compound
  • Carbonyl group
  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP4.08ALOGPS
logP4.38ChemAxon
logS-5.1ALOGPS
pKa (Strongest Acidic)13.74ChemAxon
pKa (Strongest Basic)-0.84ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area104.06 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity144.61 m³·mol⁻¹ChemAxon
Polarizability58.72 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID58825974
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound71546258
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Klaiklay, S., et al. (2013). Klaiklay, S., et al, Phytochemistry 85, 161 (2013) . Phytochem..