NP-MRD: Showing NP-Card for photipyrone B (NP0041477)

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Record Information

Version

2.0

Created at

2021-06-20 23:22:59 UTC

Updated at

2021-06-30 00:16:01 UTC

NP-MRD ID

NP0041477

Secondary Accession Numbers

None

Natural Product Identification

Common Name

photipyrone B

Provided By

JEOL Database JEOL Logo

Description

photipyrone B is found in Pestalotiopsis photiniae. photipyrone B was first documented in 2012 (Ding, G., et al.).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306212101233D          

 34 34  0  0  0  0            999 V2000
   -3.7290   -0.3465   -0.1326 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9505   -1.3192    0.7383 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5410   -1.6259    0.2203 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0268   -2.6831    1.0319 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5945   -0.4155    0.2895 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7545   -0.6767   -0.4001 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3268   -1.8839    0.1340 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7775    0.4696   -0.2062 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3394    1.8539   -0.6709 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2969    1.9041   -2.1689 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3475    2.7670   -2.6633 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2480    2.9115   -4.0769 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1378    1.1377   -2.8817 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1294    0.2695   -2.2230 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0171   -0.2650   -2.8732 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0074    0.0911   -0.8836 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7581   -0.2596    0.2309 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2892    0.6545   -0.1144 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7655   -0.6912   -1.1708 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8961   -0.9353    1.7647 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5141   -2.2587    0.8065 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6030   -1.9993   -0.8085 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0675   -2.7452    0.8298 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0674    0.4523   -0.1775 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4094   -0.1786    1.3450 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5857   -0.8722   -1.4648 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2481   -1.9280   -0.1947 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0387    0.5239    0.8579 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3752    2.1308   -0.2341 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0672    2.6036   -0.3345 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5434    3.6372   -4.2861 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0297    1.9626   -4.5471 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1822    3.2982   -4.4966 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1812    1.1321   -3.9625 H   0  0  0  0  0  0  0  0  0  0  0  0
  8  6  1  0  0  0  0
 10  9  1  0  0  0  0
  6  5  1  0  0  0  0
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  5  3  1  0  0  0  0
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  8 28  1  1  0  0  0
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  3 22  1  6  0  0  0
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  2 21  1  0  0  0  0
  1 17  1  0  0  0  0
  1 18  1  0  0  0  0
  1 19  1  0  0  0  0
 12 31  1  0  0  0  0
 12 32  1  0  0  0  0
 12 33  1  0  0  0  0
  7 27  1  0  0  0  0
  4 23  1  0  0  0  0
M  END

     RDKit          3D

 34 34  0  0  0  0  0  0  0  0999 V2000
   -3.7290   -0.3465   -0.1326 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9505   -1.3192    0.7383 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5410   -1.6259    0.2203 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0268   -2.6831    1.0319 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5945   -0.4155    0.2895 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7545   -0.6767   -0.4001 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3268   -1.8839    0.1340 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7775    0.4696   -0.2062 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3394    1.8539   -0.6709 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2969    1.9041   -2.1689 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3475    2.7670   -2.6633 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2480    2.9115   -4.0769 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1378    1.1377   -2.8817 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1294    0.2695   -2.2230 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0171   -0.2650   -2.8732 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0074    0.0911   -0.8836 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7581   -0.2596    0.2309 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2892    0.6545   -0.1144 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7655   -0.6912   -1.1708 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8961   -0.9353    1.7647 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5141   -2.2587    0.8065 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6030   -1.9993   -0.8085 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0675   -2.7452    0.8298 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0674    0.4523   -0.1775 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4094   -0.1786    1.3450 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5857   -0.8722   -1.4648 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2481   -1.9280   -0.1947 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0387    0.5239    0.8579 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3752    2.1308   -0.2341 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0672    2.6036   -0.3345 H   0  0  0  0  0  0  0  0  0  0  0  0
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    1.1822    3.2982   -4.4966 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1812    1.1321   -3.9625 H   0  0  0  0  0  0  0  0  0  0  0  0
  8  6  1  0
 10  9  1  0
  6  5  1  0
 13 14  1  0
  5  3  1  0
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  3  2  1  0
  8 16  1  0
  2  1  1  0
  8  9  1  0
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 14 15  2  0
  6  7  1  0
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  3  4  1  0
 13 34  1  0
  8 28  1  1
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  6 26  1  6
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  3 22  1  6
  2 20  1  0
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  1 17  1  0
  1 18  1  0
  1 19  1  0
 12 31  1  0
 12 32  1  0
 12 33  1  0
  7 27  1  0
  4 23  1  0
M  END


  Mrv1652306212101233D          

 34 34  0  0  0  0            999 V2000
   -3.7290   -0.3465   -0.1326 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9505   -1.3192    0.7383 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5410   -1.6259    0.2203 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0268   -2.6831    1.0319 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5945   -0.4155    0.2895 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7545   -0.6767   -0.4001 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3268   -1.8839    0.1340 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7775    0.4696   -0.2062 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3394    1.8539   -0.6709 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2969    1.9041   -2.1689 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3475    2.7670   -2.6633 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2480    2.9115   -4.0769 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.1294    0.2695   -2.2230 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0171   -0.2650   -2.8732 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0074    0.0911   -0.8836 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7581   -0.2596    0.2309 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2892    0.6545   -0.1144 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7655   -0.6912   -1.1708 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.5141   -2.2587    0.8065 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.4094   -0.1786    1.3450 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5857   -0.8722   -1.4648 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2481   -1.9280   -0.1947 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0387    0.5239    0.8579 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3752    2.1308   -0.2341 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0672    2.6036   -0.3345 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5434    3.6372   -4.2861 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0297    1.9626   -4.5471 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1822    3.2982   -4.4966 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1812    1.1321   -3.9625 H   0  0  0  0  0  0  0  0  0  0  0  0
  8  6  1  0  0  0  0
 10  9  1  0  0  0  0
  6  5  1  0  0  0  0
 13 14  1  0  0  0  0
  5  3  1  0  0  0  0
 14 16  1  0  0  0  0
  3  2  1  0  0  0  0
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  2  1  1  0  0  0  0
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 14 15  2  0  0  0  0
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  1 17  1  0  0  0  0
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  1 19  1  0  0  0  0
 12 31  1  0  0  0  0
 12 32  1  0  0  0  0
 12 33  1  0  0  0  0
  7 27  1  0  0  0  0
  4 23  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0041477

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@@]([H])(C([H])([H])C([H])([H])[H])C([H])([H])[C@]([H])(O[H])[C@@]1([H])OC(=O)C([H])=C(OC([H])([H])[H])C1([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C11H18O5/c1-3-7(12)4-9(13)10-5-8(15-2)6-11(14)16-10/h6-7,9-10,12-13H,3-5H2,1-2H3/t7-,9-,10-/m0/s1

> <INCHI_KEY>
QPHDBTAGXJAYBS-HGNGGELXSA-N

> <FORMULA>
C11H18O5

> <MOLECULAR_WEIGHT>
230.26

> <EXACT_MASS>
230.11542368

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
34

> <JCHEM_AVERAGE_POLARIZABILITY>
23.55381108679665

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(6S)-6-[(1S,3S)-1,3-dihydroxypentyl]-4-methoxy-5,6-dihydro-2H-pyran-2-one

> <ALOGPS_LOGP>
0.24

> <JCHEM_LOGP>
-0.2230569073333336

> <ALOGPS_LOGS>
-0.95

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.108750926939479

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.972348176806697

> <JCHEM_PKA_STRONGEST_BASIC>
-2.7190365283508227

> <JCHEM_POLAR_SURFACE_AREA>
75.99

> <JCHEM_REFRACTIVITY>
58.48950000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.58e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(6S)-6-[(1S,3S)-1,3-dihydroxypentyl]-4-methoxy-5,6-dihydropyran-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 34 34  0  0  0  0  0  0  0  0999 V2000
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   -2.9505   -1.3192    0.7383 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5410   -1.6259    0.2203 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0268   -2.6831    1.0319 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5945   -0.4155    0.2895 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7545   -0.6767   -0.4001 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3268   -1.8839    0.1340 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7775    0.4696   -0.2062 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3394    1.8539   -0.6709 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2969    1.9041   -2.1689 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3475    2.7670   -2.6633 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2480    2.9115   -4.0769 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1378    1.1377   -2.8817 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1294    0.2695   -2.2230 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0171   -0.2650   -2.8732 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0074    0.0911   -0.8836 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7581   -0.2596    0.2309 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2892    0.6545   -0.1144 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7655   -0.6912   -1.1708 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8961   -0.9353    1.7647 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5141   -2.2587    0.8065 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6030   -1.9993   -0.8085 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0675   -2.7452    0.8298 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0674    0.4523   -0.1775 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4094   -0.1786    1.3450 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5857   -0.8722   -1.4648 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2481   -1.9280   -0.1947 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0387    0.5239    0.8579 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3752    2.1308   -0.2341 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0672    2.6036   -0.3345 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5434    3.6372   -4.2861 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0297    1.9626   -4.5471 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1822    3.2982   -4.4966 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1812    1.1321   -3.9625 H   0  0  0  0  0  0  0  0  0  0  0  0
  8  6  1  0
 10  9  1  0
  6  5  1  0
 13 14  1  0
  5  3  1  0
 14 16  1  0
  3  2  1  0
  8 16  1  0
  2  1  1  0
  8  9  1  0
 10 11  1  0
 11 12  1  0
 14 15  2  0
  6  7  1  0
 10 13  2  0
  3  4  1  0
 13 34  1  0
  8 28  1  1
  9 29  1  0
  9 30  1  0
  6 26  1  6
  5 24  1  0
  5 25  1  0
  3 22  1  6
  2 20  1  0
  2 21  1  0
  1 17  1  0
  1 18  1  0
  1 19  1  0
 12 31  1  0
 12 32  1  0
 12 33  1  0
  7 27  1  0
  4 23  1  0
M  END

HEADER    PROTEIN                                 21-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   21-JUN-21         0                                  
HETATM    1  C   UNK     0      -3.729  -0.347  -0.133  0.00  0.00           C+0
HETATM    2  C   UNK     0      -2.950  -1.319   0.738  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.541  -1.626   0.220  0.00  0.00           C+0
HETATM    4  O   UNK     0      -1.027  -2.683   1.032  0.00  0.00           O+0
HETATM    5  C   UNK     0      -0.595  -0.416   0.290  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.755  -0.677  -0.400  0.00  0.00           C+0
HETATM    7  O   UNK     0       1.327  -1.884   0.134  0.00  0.00           O+0
HETATM    8  C   UNK     0       1.778   0.470  -0.206  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.339   1.854  -0.671  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.297   1.904  -2.169  0.00  0.00           C+0
HETATM   11  O   UNK     0       0.348   2.767  -2.663  0.00  0.00           O+0
HETATM   12  C   UNK     0       0.248   2.912  -4.077  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.138   1.138  -2.882  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.129   0.270  -2.223  0.00  0.00           C+0
HETATM   15  O   UNK     0       4.017  -0.265  -2.873  0.00  0.00           O+0
HETATM   16  O   UNK     0       3.007   0.091  -0.884  0.00  0.00           O+0
HETATM   17  H   UNK     0      -4.758  -0.260   0.231  0.00  0.00           H+0
HETATM   18  H   UNK     0      -3.289   0.655  -0.114  0.00  0.00           H+0
HETATM   19  H   UNK     0      -3.765  -0.691  -1.171  0.00  0.00           H+0
HETATM   20  H   UNK     0      -2.896  -0.935   1.765  0.00  0.00           H+0
HETATM   21  H   UNK     0      -3.514  -2.259   0.807  0.00  0.00           H+0
HETATM   22  H   UNK     0      -1.603  -1.999  -0.809  0.00  0.00           H+0
HETATM   23  H   UNK     0      -0.068  -2.745   0.830  0.00  0.00           H+0
HETATM   24  H   UNK     0      -1.067   0.452  -0.178  0.00  0.00           H+0
HETATM   25  H   UNK     0      -0.409  -0.179   1.345  0.00  0.00           H+0
HETATM   26  H   UNK     0       0.586  -0.872  -1.465  0.00  0.00           H+0
HETATM   27  H   UNK     0       2.248  -1.928  -0.195  0.00  0.00           H+0
HETATM   28  H   UNK     0       2.039   0.524   0.858  0.00  0.00           H+0
HETATM   29  H   UNK     0       0.375   2.131  -0.234  0.00  0.00           H+0
HETATM   30  H   UNK     0       2.067   2.604  -0.335  0.00  0.00           H+0
HETATM   31  H   UNK     0      -0.543   3.637  -4.286  0.00  0.00           H+0
HETATM   32  H   UNK     0      -0.030   1.963  -4.547  0.00  0.00           H+0
HETATM   33  H   UNK     0       1.182   3.298  -4.497  0.00  0.00           H+0
HETATM   34  H   UNK     0       2.181   1.132  -3.962  0.00  0.00           H+0
CONECT    1    2   17   18   19                                             
CONECT    2    3    1   20   21                                             
CONECT    3    5    2    4   22                                             
CONECT    4    3   23                                                       
CONECT    5    6    3   24   25                                             
CONECT    6    8    5    7   26                                             
CONECT    7    6   27                                                       
CONECT    8    6   16    9   28                                             
CONECT    9   10    8   29   30                                             
CONECT   10    9   11   13                                                  
CONECT   11   10   12                                                       
CONECT   12   11   31   32   33                                             
CONECT   13   14   10   34                                                  
CONECT   14   13   16   15                                                  
CONECT   15   14                                                            
CONECT   16   14    8                                                       
CONECT   17    1                                                            
CONECT   18    1                                                            
CONECT   19    1                                                            
CONECT   20    2                                                            
CONECT   21    2                                                            
CONECT   22    3                                                            
CONECT   23    4                                                            
CONECT   24    5                                                            
CONECT   25    5                                                            
CONECT   26    6                                                            
CONECT   27    7                                                            
CONECT   28    8                                                            
CONECT   29    9                                                            
CONECT   30    9                                                            
CONECT   31   12                                                            
CONECT   32   12                                                            
CONECT   33   12                                                            
CONECT   34   13                                                            
MASTER        0    0    0    0    0    0    0    0   34    0   68    0
END

RDKit          3D

34 34  0  0  0  0  0  0  0  0999 V2000
   -3.7290   -0.3465   -0.1326 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9505   -1.3192    0.7383 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5410   -1.6259    0.2203 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0268   -2.6831    1.0319 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5945   -0.4155    0.2895 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7545   -0.6767   -0.4001 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3268   -1.8839    0.1340 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7775    0.4696   -0.2062 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3394    1.8539   -0.6709 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2969    1.9041   -2.1689 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3475    2.7670   -2.6633 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2480    2.9115   -4.0769 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1378    1.1377   -2.8817 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1294    0.2695   -2.2230 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0171   -0.2650   -2.8732 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0074    0.0911   -0.8836 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7581   -0.2596    0.2309 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2892    0.6545   -0.1144 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7655   -0.6912   -1.1708 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8961   -0.9353    1.7647 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5141   -2.2587    0.8065 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6030   -1.9993   -0.8085 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0675   -2.7452    0.8298 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0674    0.4523   -0.1775 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4094   -0.1786    1.3450 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5857   -0.8722   -1.4648 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2481   -1.9280   -0.1947 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0387    0.5239    0.8579 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3752    2.1308   -0.2341 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0672    2.6036   -0.3345 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5434    3.6372   -4.2861 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0297    1.9626   -4.5471 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1822    3.2982   -4.4966 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1812    1.1321   -3.9625 H   0  0  0  0  0  0  0  0  0  0  0  0
  8  6  1  0
 10  9  1  0
  6  5  1  0
 13 14  1  0
  5  3  1  0
 14 16  1  0
  3  2  1  0
  8 16  1  0
  2  1  1  0
  8  9  1  0
 10 11  1  0
 11 12  1  0
 14 15  2  0
  6  7  1  0
 10 13  2  0
  3  4  1  0
 13 34  1  0
  8 28  1  1
  9 29  1  0
  9 30  1  0
  6 26  1  6
  5 24  1  0
  5 25  1  0
  3 22  1  6
  2 20  1  0
  2 21  1  0
  1 17  1  0
  1 18  1  0
  1 19  1  0
 12 31  1  0
 12 32  1  0
 12 33  1  0
  7 27  1  0
  4 23  1  0
M  END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₁H₁₈O₅

Average Mass

230.2600 Da

Monoisotopic Mass

230.11542 Da

IUPAC Name

(6S)-6-[(1S,3S)-1,3-dihydroxypentyl]-4-methoxy-5,6-dihydro-2H-pyran-2-one

Traditional Name

(6S)-6-[(1S,3S)-1,3-dihydroxypentyl]-4-methoxy-5,6-dihydropyran-2-one

CAS Registry Number

Not Available

SMILES

[H]O[C@@]([H])(C([H])([H])C([H])([H])[H])C([H])([H])[C@]([H])(O[H])[C@@]1([H])OC(=O)C([H])=C(OC([H])([H])[H])C1([H])[H]

InChI Identifier

InChI=1S/C11H18O5/c1-3-7(12)4-9(13)10-5-8(15-2)6-11(14)16-10/h6-7,9-10,12-13H,3-5H2,1-2H3/t7-,9-,10-/m0/s1

InChI Key

QPHDBTAGXJAYBS-HGNGGELXSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Pestalotiopsis photiniae	JEOL database	Ding, G., et al, J. Antibiotics 65, 271 (2012)

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.24	ALOGPS
logP	-0.22	ChemAxon
logS	-0.95	ALOGPS
pKa (Strongest Acidic)	13.97	ChemAxon
pKa (Strongest Basic)	-2.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	75.99 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	58.49 m³·mol⁻¹	ChemAxon
Polarizability	23.55 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

Ding, G., et al. (2012). Ding, G., et al, J. Antibiotics 65, 271 (2012). J. Antibiotics.

Showing NP-Card for photipyrone B (NP0041477)

MOL for NP0041477 (photipyrone B)

3D MOL for NP0041477 (photipyrone B)

3D SDF for NP0041477 (photipyrone B)

3D-SDF for NP0041477 (photipyrone B)

PDB for NP0041477 (photipyrone B)

3D PDB for NP0041477 (photipyrone B)

SMILES for NP0041477 (photipyrone B)

INCHI for NP0041477 (photipyrone B)

Structure for NP0041477 (photipyrone B)

3D Structure for NP0041477 (photipyrone B)