NP-MRD: Showing NP-Card for clongeracemosone D (NP0040964)

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Record Information

Version

2.0

Created at

2021-06-20 22:59:35 UTC

Updated at

2021-06-30 00:15:12 UTC

NP-MRD ID

NP0040964

Secondary Accession Numbers

None

Natural Product Identification

Common Name

clongeracemosone D

Provided By

JEOL Database JEOL Logo

Description

Longeracemosone D belongs to the class of organic compounds known as 8-prenylated flavanones. These are flavanones that features a C5-isoprenoid substituent at the 8-position. clongeracemosone D is found in Dunbaria longeracemosa. clongeracemosone D was first documented in 2011 (Prachyawarakorn, V., et al.). Based on a literature review very few articles have been published on Longeracemosone D.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306212100593D          

 57 60  0  0  0  0            999 V2000
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    0.4697   -3.3817   -0.7511 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1110   -4.7366   -0.1930 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4045   -2.2456    0.2561 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9711   -2.1118    0.6307 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9550   -0.8814   -0.2117 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9889    0.1368    0.9167 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0864    0.1893    1.7985 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1173    1.1065    2.8589 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0301    1.9735    3.0471 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652306212100593D          

 57 60  0  0  0  0            999 V2000
    0.8227   -3.2561   -2.0428 C   0  0  0  0  0  0  0  0  0  0  0  0
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    1.0898   -2.3050   -2.4903 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9240   -4.7454    0.1632 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2091   -5.5306   -0.9411 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7707   -4.9889    0.6437 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9512   -2.5578    1.1546 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4407   -1.7796   -0.1551 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9671   -0.9937   -0.6206 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3492   -0.4852   -1.0365 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2582    3.4002    4.0975 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6406    0.5532    1.6607 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9784    0.3395    1.1444 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7135    0.0514   -0.5831 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2392    0.6423   -2.9446 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0109    1.5289   -3.5759 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2582    1.8188   -1.8683 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2016    3.4234    0.5701 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3804    3.8624    2.5686 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3550    1.9067    4.5005 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0872    0.2101    4.2414 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9290   -2.2279    3.7267 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6769   -2.4814    3.9167 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8312   -3.0248    2.4507 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3197   -1.1221    2.3997 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6433    0.0277    1.2256 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4290   -1.6957    0.9737 H   0  0  0  0  0  0  0  0  0  0  0  0
 13 14  1  0  0  0  0
 20 21  2  0  0  0  0
 21 16  1  0  0  0  0
  9  8  2  0  0  0  0
 12 24  1  0  0  0  0
 24 22  1  0  0  0  0
 22 15  1  0  0  0  0
 15 14  1  0  0  0  0
  9 10  1  0  0  0  0
 22 23  1  0  0  0  0
  9 26  1  0  0  0  0
  8 31  1  0  0  0  0
 31 28  1  0  0  0  0
 28 27  1  0  0  0  0
 27 26  2  0  0  0  0
 10 12  2  0  0  0  0
 24 25  2  0  0  0  0
 15 16  1  0  0  0  0
 10 11  1  0  0  0  0
 28 29  1  1  0  0  0
 16 17  2  0  0  0  0
 28 30  1  0  0  0  0
 13  7  2  0  0  0  0
  7  6  1  0  0  0  0
 17 18  1  0  0  0  0
  6  4  1  0  0  0  0
  7  8  1  0  0  0  0
  4  2  1  0  0  0  0
 18 19  2  0  0  0  0
  2  3  1  0  0  0  0
 13 12  1  0  0  0  0
  2  1  2  3  0  0  0
 19 20  1  0  0  0  0
  4  5  1  0  0  0  0
 22 48  1  6  0  0  0
 15 42  1  1  0  0  0
 23 49  1  0  0  0  0
 17 43  1  0  0  0  0
 18 44  1  0  0  0  0
 19 45  1  0  0  0  0
 20 46  1  0  0  0  0
 21 47  1  0  0  0  0
 27 51  1  0  0  0  0
 26 50  1  0  0  0  0
 11 41  1  0  0  0  0
 29 52  1  0  0  0  0
 29 53  1  0  0  0  0
 29 54  1  0  0  0  0
 30 55  1  0  0  0  0
 30 56  1  0  0  0  0
 30 57  1  0  0  0  0
  6 39  1  0  0  0  0
  6 40  1  0  0  0  0
  4 37  1  1  0  0  0
  3 34  1  0  0  0  0
  3 35  1  0  0  0  0
  3 36  1  0  0  0  0
  1 32  1  0  0  0  0
  1 33  1  0  0  0  0
  5 38  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0040964

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C2C(O[C@]([H])(C3=C([H])C([H])=C([H])C([H])=C3[H])[C@@]([H])(O[H])C2=O)=C(C2=C1C([H])=C([H])C(O2)(C([H])([H])[H])C([H])([H])[H])C([H])([H])[C@@]([H])(O[H])C(=C([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C25H26O6/c1-13(2)17(26)12-16-23-15(10-11-25(3,4)31-23)19(27)18-20(28)21(29)22(30-24(16)18)14-8-6-5-7-9-14/h5-11,17,21-22,26-27,29H,1,12H2,2-4H3/t17-,21+,22-/m1/s1

> <INCHI_KEY>
JAJUIQORHRAYGX-VOQZNFBZSA-N

> <FORMULA>
C25H26O6

> <MOLECULAR_WEIGHT>
422.477

> <EXACT_MASS>
422.172938557

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
57

> <JCHEM_AVERAGE_POLARIZABILITY>
45.856246501894304

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2R,3R)-3,5-dihydroxy-10-[(2R)-2-hydroxy-3-methylbut-3-en-1-yl]-8,8-dimethyl-2-phenyl-2H,3H,4H,8H-pyrano[3,2-g]chromen-4-one

> <ALOGPS_LOGP>
3.03

> <JCHEM_LOGP>
4.183393237666667

> <ALOGPS_LOGS>
-3.69

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.231289053736841

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.791422648582417

> <JCHEM_PKA_STRONGEST_BASIC>
-3.054121838756882

> <JCHEM_POLAR_SURFACE_AREA>
96.22000000000001

> <JCHEM_REFRACTIVITY>
117.74540000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
8.65e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2R,3R)-3,5-dihydroxy-10-[(2R)-2-hydroxy-3-methylbut-3-en-1-yl]-8,8-dimethyl-2-phenyl-2H,3H-pyrano[3,2-g]chromen-4-one

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 57 60  0  0  0  0  0  0  0  0999 V2000
    0.8227   -3.2561   -2.0428 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4697   -3.3817   -0.7511 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1110   -4.7366   -0.1930 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4045   -2.2456    0.2561 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9711   -2.1118    0.6307 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9550   -0.8814   -0.2117 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9889    0.1368    0.9167 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0864    0.1893    1.7985 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1173    1.1065    2.8589 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0301    1.9735    3.0471 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0867    2.8710    4.0881 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0770    1.9128    2.1894 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1021    0.9925    1.1402 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1557    0.8998    0.2689 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4197    1.2626    0.8494 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.4780    1.0864   -0.2299 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7472    0.5935    0.1115 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7347    0.4329   -0.8621 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4689    0.7667   -2.1881 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2172    1.2650   -2.5419 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2284    1.4273   -1.5697 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3775    2.6989    1.3741 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.5826    3.0539    2.0574 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2304    2.8173    2.3597 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2313    3.6501    3.2688 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2852    1.1438    3.7327 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2277    0.2107    3.5764 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1442   -0.8700    2.5288 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.8902   -2.2253    3.1986 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4628   -0.9197    1.7477 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1108   -0.6839    1.5412 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8507   -4.1176   -2.7049 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0898   -2.3050   -2.4903 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9240   -4.7454    0.1632 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2091   -5.5306   -0.9411 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7707   -4.9889    0.6437 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9512   -2.5578    1.1546 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4407   -1.7796   -0.1551 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9671   -0.9937   -0.6206 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3492   -0.4852   -1.0365 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2582    3.4002    4.0975 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6406    0.5532    1.6607 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9784    0.3395    1.1444 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7135    0.0514   -0.5831 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2392    0.6423   -2.9446 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0109    1.5289   -3.5759 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2582    1.8188   -1.8683 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2016    3.4234    0.5701 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3804    3.8624    2.5686 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3550    1.9067    4.5005 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0872    0.2101    4.2414 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9290   -2.2279    3.7267 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6769   -2.4814    3.9167 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8312   -3.0248    2.4507 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3197   -1.1221    2.3997 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6433    0.0277    1.2256 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4290   -1.6957    0.9737 H   0  0  0  0  0  0  0  0  0  0  0  0
 13 14  1  0
 20 21  2  0
 21 16  1  0
  9  8  2  0
 12 24  1  0
 24 22  1  0
 22 15  1  0
 15 14  1  0
  9 10  1  0
 22 23  1  0
  9 26  1  0
  8 31  1  0
 31 28  1  0
 28 27  1  0
 27 26  2  0
 10 12  2  0
 24 25  2  0
 15 16  1  0
 10 11  1  0
 28 29  1  1
 16 17  2  0
 28 30  1  0
 13  7  2  0
  7  6  1  0
 17 18  1  0
  6  4  1  0
  7  8  1  0
  4  2  1  0
 18 19  2  0
  2  3  1  0
 13 12  1  0
  2  1  2  3
 19 20  1  0
  4  5  1  0
 22 48  1  6
 15 42  1  1
 23 49  1  0
 17 43  1  0
 18 44  1  0
 19 45  1  0
 20 46  1  0
 21 47  1  0
 27 51  1  0
 26 50  1  0
 11 41  1  0
 29 52  1  0
 29 53  1  0
 29 54  1  0
 30 55  1  0
 30 56  1  0
 30 57  1  0
  6 39  1  0
  6 40  1  0
  4 37  1  1
  3 34  1  0
  3 35  1  0
  3 36  1  0
  1 32  1  0
  1 33  1  0
  5 38  1  0
M  END

HEADER    PROTEIN                                 21-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   21-JUN-21         0                                  
HETATM    1  C   UNK     0       0.823  -3.256  -2.043  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.470  -3.382  -0.751  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.111  -4.737  -0.193  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.405  -2.246   0.256  0.00  0.00           C+0
HETATM    5  O   UNK     0      -0.971  -2.112   0.631  0.00  0.00           O+0
HETATM    6  C   UNK     0       0.955  -0.881  -0.212  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.989   0.137   0.917  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.086   0.189   1.799  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.117   1.107   2.859  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.030   1.974   3.047  0.00  0.00           C+0
HETATM   11  O   UNK     0       1.087   2.871   4.088  0.00  0.00           O+0
HETATM   12  C   UNK     0      -0.077   1.913   2.189  0.00  0.00           C+0
HETATM   13  C   UNK     0      -0.102   0.993   1.140  0.00  0.00           C+0
HETATM   14  O   UNK     0      -1.156   0.900   0.269  0.00  0.00           O+0
HETATM   15  C   UNK     0      -2.420   1.263   0.849  0.00  0.00           C+0
HETATM   16  C   UNK     0      -3.478   1.086  -0.230  0.00  0.00           C+0
HETATM   17  C   UNK     0      -4.747   0.594   0.112  0.00  0.00           C+0
HETATM   18  C   UNK     0      -5.735   0.433  -0.862  0.00  0.00           C+0
HETATM   19  C   UNK     0      -5.469   0.767  -2.188  0.00  0.00           C+0
HETATM   20  C   UNK     0      -4.217   1.265  -2.542  0.00  0.00           C+0
HETATM   21  C   UNK     0      -3.228   1.427  -1.570  0.00  0.00           C+0
HETATM   22  C   UNK     0      -2.377   2.699   1.374  0.00  0.00           C+0
HETATM   23  O   UNK     0      -3.583   3.054   2.057  0.00  0.00           O+0
HETATM   24  C   UNK     0      -1.230   2.817   2.360  0.00  0.00           C+0
HETATM   25  O   UNK     0      -1.231   3.650   3.269  0.00  0.00           O+0
HETATM   26  C   UNK     0       3.285   1.144   3.733  0.00  0.00           C+0
HETATM   27  C   UNK     0       4.228   0.211   3.576  0.00  0.00           C+0
HETATM   28  C   UNK     0       4.144  -0.870   2.529  0.00  0.00           C+0
HETATM   29  C   UNK     0       3.890  -2.225   3.199  0.00  0.00           C+0
HETATM   30  C   UNK     0       5.463  -0.920   1.748  0.00  0.00           C+0
HETATM   31  O   UNK     0       3.111  -0.684   1.541  0.00  0.00           O+0
HETATM   32  H   UNK     0       0.851  -4.118  -2.705  0.00  0.00           H+0
HETATM   33  H   UNK     0       1.090  -2.305  -2.490  0.00  0.00           H+0
HETATM   34  H   UNK     0      -0.924  -4.745   0.163  0.00  0.00           H+0
HETATM   35  H   UNK     0       0.209  -5.531  -0.941  0.00  0.00           H+0
HETATM   36  H   UNK     0       0.771  -4.989   0.644  0.00  0.00           H+0
HETATM   37  H   UNK     0       0.951  -2.558   1.155  0.00  0.00           H+0
HETATM   38  H   UNK     0      -1.441  -1.780  -0.155  0.00  0.00           H+0
HETATM   39  H   UNK     0       1.967  -0.994  -0.621  0.00  0.00           H+0
HETATM   40  H   UNK     0       0.349  -0.485  -1.036  0.00  0.00           H+0
HETATM   41  H   UNK     0       0.258   3.400   4.098  0.00  0.00           H+0
HETATM   42  H   UNK     0      -2.641   0.553   1.661  0.00  0.00           H+0
HETATM   43  H   UNK     0      -4.978   0.340   1.144  0.00  0.00           H+0
HETATM   44  H   UNK     0      -6.713   0.051  -0.583  0.00  0.00           H+0
HETATM   45  H   UNK     0      -6.239   0.642  -2.945  0.00  0.00           H+0
HETATM   46  H   UNK     0      -4.011   1.529  -3.576  0.00  0.00           H+0
HETATM   47  H   UNK     0      -2.258   1.819  -1.868  0.00  0.00           H+0
HETATM   48  H   UNK     0      -2.202   3.423   0.570  0.00  0.00           H+0
HETATM   49  H   UNK     0      -3.380   3.862   2.569  0.00  0.00           H+0
HETATM   50  H   UNK     0       3.355   1.907   4.500  0.00  0.00           H+0
HETATM   51  H   UNK     0       5.087   0.210   4.241  0.00  0.00           H+0
HETATM   52  H   UNK     0       2.929  -2.228   3.727  0.00  0.00           H+0
HETATM   53  H   UNK     0       4.677  -2.481   3.917  0.00  0.00           H+0
HETATM   54  H   UNK     0       3.831  -3.025   2.451  0.00  0.00           H+0
HETATM   55  H   UNK     0       6.320  -1.122   2.400  0.00  0.00           H+0
HETATM   56  H   UNK     0       5.643   0.028   1.226  0.00  0.00           H+0
HETATM   57  H   UNK     0       5.429  -1.696   0.974  0.00  0.00           H+0
CONECT    1    2   32   33                                                  
CONECT    2    4    3    1                                                  
CONECT    3    2   34   35   36                                             
CONECT    4    6    2    5   37                                             
CONECT    5    4   38                                                       
CONECT    6    7    4   39   40                                             
CONECT    7   13    6    8                                                  
CONECT    8    9   31    7                                                  
CONECT    9    8   10   26                                                  
CONECT   10    9   12   11                                                  
CONECT   11   10   41                                                       
CONECT   12   24   10   13                                                  
CONECT   13   14    7   12                                                  
CONECT   14   13   15                                                       
CONECT   15   22   14   16   42                                             
CONECT   16   21   15   17                                                  
CONECT   17   16   18   43                                                  
CONECT   18   17   19   44                                                  
CONECT   19   18   20   45                                                  
CONECT   20   21   19   46                                                  
CONECT   21   20   16   47                                                  
CONECT   22   24   15   23   48                                             
CONECT   23   22   49                                                       
CONECT   24   12   22   25                                                  
CONECT   25   24                                                            
CONECT   26    9   27   50                                                  
CONECT   27   28   26   51                                                  
CONECT   28   31   27   29   30                                             
CONECT   29   28   52   53   54                                             
CONECT   30   28   55   56   57                                             
CONECT   31    8   28                                                       
CONECT   32    1                                                            
CONECT   33    1                                                            
CONECT   34    3                                                            
CONECT   35    3                                                            
CONECT   36    3                                                            
CONECT   37    4                                                            
CONECT   38    5                                                            
CONECT   39    6                                                            
CONECT   40    6                                                            
CONECT   41   11                                                            
CONECT   42   15                                                            
CONECT   43   17                                                            
CONECT   44   18                                                            
CONECT   45   19                                                            
CONECT   46   20                                                            
CONECT   47   21                                                            
CONECT   48   22                                                            
CONECT   49   23                                                            
CONECT   50   26                                                            
CONECT   51   27                                                            
CONECT   52   29                                                            
CONECT   53   29                                                            
CONECT   54   29                                                            
CONECT   55   30                                                            
CONECT   56   30                                                            
CONECT   57   30                                                            
MASTER        0    0    0    0    0    0    0    0   57    0  120    0
END

RDKit          3D

57 60  0  0  0  0  0  0  0  0999 V2000
    0.8227   -3.2561   -2.0428 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4697   -3.3817   -0.7511 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1110   -4.7366   -0.1930 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4045   -2.2456    0.2561 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9711   -2.1118    0.6307 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9550   -0.8814   -0.2117 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9889    0.1368    0.9167 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0864    0.1893    1.7985 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1173    1.1065    2.8589 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0301    1.9735    3.0471 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0867    2.8710    4.0881 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0770    1.9128    2.1894 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1021    0.9925    1.1402 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1557    0.8998    0.2689 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4197    1.2626    0.8494 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.4780    1.0864   -0.2299 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7472    0.5935    0.1115 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7347    0.4329   -0.8621 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4689    0.7667   -2.1881 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2172    1.2650   -2.5419 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2284    1.4273   -1.5697 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3775    2.6989    1.3741 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.5826    3.0539    2.0574 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2304    2.8173    2.3597 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2313    3.6501    3.2688 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2852    1.1438    3.7327 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2277    0.2107    3.5764 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1442   -0.8700    2.5288 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.8902   -2.2253    3.1986 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4628   -0.9197    1.7477 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1108   -0.6839    1.5412 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8507   -4.1176   -2.7049 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0898   -2.3050   -2.4903 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9240   -4.7454    0.1632 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2091   -5.5306   -0.9411 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7707   -4.9889    0.6437 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9512   -2.5578    1.1546 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4407   -1.7796   -0.1551 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9671   -0.9937   -0.6206 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3492   -0.4852   -1.0365 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2582    3.4002    4.0975 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6406    0.5532    1.6607 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9784    0.3395    1.1444 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7135    0.0514   -0.5831 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2392    0.6423   -2.9446 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0109    1.5289   -3.5759 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2582    1.8188   -1.8683 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2016    3.4234    0.5701 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3804    3.8624    2.5686 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3550    1.9067    4.5005 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0872    0.2101    4.2414 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9290   -2.2279    3.7267 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6769   -2.4814    3.9167 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8312   -3.0248    2.4507 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3197   -1.1221    2.3997 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6433    0.0277    1.2256 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4290   -1.6957    0.9737 H   0  0  0  0  0  0  0  0  0  0  0  0
 13 14  1  0
 20 21  2  0
 21 16  1  0
  9  8  2  0
 12 24  1  0
 24 22  1  0
 22 15  1  0
 15 14  1  0
  9 10  1  0
 22 23  1  0
  9 26  1  0
  8 31  1  0
 31 28  1  0
 28 27  1  0
 27 26  2  0
 10 12  2  0
 24 25  2  0
 15 16  1  0
 10 11  1  0
 28 29  1  1
 16 17  2  0
 28 30  1  0
 13  7  2  0
  7  6  1  0
 17 18  1  0
  6  4  1  0
  7  8  1  0
  4  2  1  0
 18 19  2  0
  2  3  1  0
 13 12  1  0
  2  1  2  3
 19 20  1  0
  4  5  1  0
 22 48  1  6
 15 42  1  1
 23 49  1  0
 17 43  1  0
 18 44  1  0
 19 45  1  0
 20 46  1  0
 21 47  1  0
 27 51  1  0
 26 50  1  0
 11 41  1  0
 29 52  1  0
 29 53  1  0
 29 54  1  0
 30 55  1  0
 30 56  1  0
 30 57  1  0
  6 39  1  0
  6 40  1  0
  4 37  1  1
  3 34  1  0
  3 35  1  0
  3 36  1  0
  1 32  1  0
  1 33  1  0
  5 38  1  0
M  END

View in JSmol View DFT Assignments 3D Conformers

Synonyms

Not Available

Chemical Formula

C₂₅H₂₆O₆

Average Mass

422.4770 Da

Monoisotopic Mass

422.17294 Da

IUPAC Name

(2R,3R)-3,5-dihydroxy-10-[(2R)-2-hydroxy-3-methylbut-3-en-1-yl]-8,8-dimethyl-2-phenyl-2H,3H,4H,8H-pyrano[3,2-g]chromen-4-one

Traditional Name

(2R,3R)-3,5-dihydroxy-10-[(2R)-2-hydroxy-3-methylbut-3-en-1-yl]-8,8-dimethyl-2-phenyl-2H,3H-pyrano[3,2-g]chromen-4-one

CAS Registry Number

Not Available

SMILES

[H]OC1=C2C(O[C@]([H])(C3=C([H])C([H])=C([H])C([H])=C3[H])[C@@]([H])(O[H])C2=O)=C(C2=C1C([H])=C([H])C(O2)(C([H])([H])[H])C([H])([H])[H])C([H])([H])[C@@]([H])(O[H])C(=C([H])[H])C([H])([H])[H]

InChI Identifier

InChI=1S/C25H26O6/c1-13(2)17(26)12-16-23-15(10-11-25(3,4)31-23)19(27)18-20(28)21(29)22(30-24(16)18)14-8-6-5-7-9-14/h5-11,17,21-22,26-27,29H,1,12H2,2-4H3/t17-,21+,22-/m1/s1

InChI Key

JAJUIQORHRAYGX-VOQZNFBZSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 125 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 150 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 175 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 225 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 250 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Dunbaria longiracemosa	JEOL database	Prachyawarakorn, V., et al, Eur. J. Org. Chem. 2011, 3803.

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 8-prenylated flavanones. These are flavanones that features a C5-isoprenoid substituent at the 8-position.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Flavonoids

Sub Class

Flavans

Direct Parent

8-prenylated flavanones

Alternative Parents

Substituents

8-prenylated flavanone
Pyranoflavonoid
3-hydroxyflavonoid
5-hydroxyflavonoid
Flavanone
Flavanonol
Hydroxyflavonoid
Pyranochromene
2,2-dimethyl-1-benzopyran
Chromone
Chromane
Benzopyran
1-benzopyran
Aryl alkyl ketone
Aryl ketone
Alkyl aryl ether
Phenol
Benzenoid
Monocyclic benzene moiety
Vinylogous acid
Ketone
Secondary alcohol
Ether
Organoheterocyclic compound
Oxacycle
Hydrocarbon derivative
Organic oxygen compound
Alcohol
Organooxygen compound
Organic oxide
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.03	ALOGPS
logP	4.18	ChemAxon
logS	-3.7	ALOGPS
pKa (Strongest Acidic)	8.79	ChemAxon
pKa (Strongest Basic)	-3.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	96.22 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	117.75 m³·mol⁻¹	ChemAxon
Polarizability	45.86 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

53484195

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Prachyawarakorn, V., et al. (2011). Prachyawarakorn, V., et al, Eur. J. Org. Chem. 2011, 3803.. Eur. J. Org. Chem..

Showing NP-Card for clongeracemosone D (NP0040964)

MOL for NP0040964 (clongeracemosone D)

3D MOL for NP0040964 (clongeracemosone D)

3D SDF for NP0040964 (clongeracemosone D)

3D-SDF for NP0040964 (clongeracemosone D)

PDB for NP0040964 (clongeracemosone D)

3D PDB for NP0040964 (clongeracemosone D)

SMILES for NP0040964 (clongeracemosone D)

INCHI for NP0040964 (clongeracemosone D)

Structure for NP0040964 (clongeracemosone D)

3D Structure for NP0040964 (clongeracemosone D)