NP-MRD: Showing NP-Card for hymenolide (NP0040839)

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Record Information

Version

2.0

Created at

2021-06-20 22:53:47 UTC

Updated at

2021-06-30 00:14:59 UTC

NP-MRD ID

NP0040839

Secondary Accession Numbers

None

Natural Product Identification

Common Name

hymenolide

Provided By

JEOL Database JEOL Logo

Description

hymenolide is found in Dugaldia hoopesii, Hymenoxys odorata, Hymenoxys richardsonii and Hymenoxys robusta. hymenolide was first documented in 2011 (Fortuna, A. M., et al.).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306212100533D          

 41 43  0  0  0  0            999 V2000
   -1.3077    3.7715    2.8556 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4266    3.2733    1.9794 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5216    4.1468    1.2479 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7597    5.3166    1.4791 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0951    3.3921    0.2727 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3921    2.1433    0.1584 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3733    1.0890   -0.3281 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8988   -0.3785   -0.3907 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5251   -1.2111    0.7339 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9285   -0.9259    1.9914 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4429   -1.2821    2.0419 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.5666   -2.6844    1.8866 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2887   -0.5016    0.9959 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.7353   -1.0675    1.0100 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4441    0.9866    1.4614 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1948    1.8660    1.5269 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6424   -0.5837   -0.4456 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9914   -1.9036   -1.1997 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5298   -1.9424   -2.6544 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0046    3.1405    3.3950 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3425    4.8385    3.0650 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3869    2.2968   -0.6005 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3079    1.1671    0.2437 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6704    1.3865   -1.3447 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3520   -0.7584   -1.3123 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5960   -0.9958    0.8204 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4524   -2.2837    0.5187 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8040   -1.0411    3.0488 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1907   -3.0624    2.6994 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7713   -2.1448    0.8210 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3584   -0.5706    0.2577 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2088   -0.9099    1.9866 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1817    1.4770    0.8087 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9050    0.9773    2.4592 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5562    1.4441    2.2030 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0842    0.2117   -1.0603 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5874   -2.7758   -0.6768 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0786   -2.0265   -1.2350 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5518   -2.0755   -2.7393 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9960   -2.7899   -3.1684 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8155   -1.0287   -3.1847 H   0  0  0  0  0  0  0  0  0  0  0  0
  6 16  1  0  0  0  0
 19 18  1  0  0  0  0
 13 17  1  0  0  0  0
 10 11  1  0  0  0  0
 17  8  1  0  0  0  0
 16  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  5  1  0  0  0  0
  6  5  1  0  0  0  0
 11 13  1  0  0  0  0
  3  4  2  0  0  0  0
 13 15  1  0  0  0  0
  8  9  1  0  0  0  0
 17 18  1  0  0  0  0
  2  1  2  3  0  0  0
  8  7  1  0  0  0  0
 13 14  1  6  0  0  0
 15 16  1  0  0  0  0
 17 36  1  6  0  0  0
  7  6  1  0  0  0  0
 11 12  1  0  0  0  0
 10  9  1  0  0  0  0
 19 39  1  0  0  0  0
 19 40  1  0  0  0  0
 19 41  1  0  0  0  0
 11 28  1  1  0  0  0
 18 37  1  0  0  0  0
 18 38  1  0  0  0  0
  8 25  1  6  0  0  0
 15 33  1  0  0  0  0
 15 34  1  0  0  0  0
  7 23  1  0  0  0  0
  7 24  1  0  0  0  0
  6 22  1  6  0  0  0
 16 35  1  1  0  0  0
  9 26  1  0  0  0  0
  9 27  1  0  0  0  0
  1 20  1  0  0  0  0
  1 21  1  0  0  0  0
 14 30  1  0  0  0  0
 14 31  1  0  0  0  0
 14 32  1  0  0  0  0
 12 29  1  0  0  0  0
M  END

     RDKit          3D

 41 43  0  0  0  0  0  0  0  0999 V2000
   -1.3077    3.7715    2.8556 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4266    3.2733    1.9794 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5216    4.1468    1.2479 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7597    5.3166    1.4791 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0951    3.3921    0.2727 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3921    2.1433    0.1584 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3733    1.0890   -0.3281 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8988   -0.3785   -0.3907 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5251   -1.2111    0.7339 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9285   -0.9259    1.9914 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4429   -1.2821    2.0419 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.5666   -2.6844    1.8866 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2887   -0.5016    0.9959 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.7353   -1.0675    1.0100 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4441    0.9866    1.4614 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1948    1.8660    1.5269 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6424   -0.5837   -0.4456 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9914   -1.9036   -1.1997 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5298   -1.9424   -2.6544 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0046    3.1405    3.3950 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3425    4.8385    3.0650 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3869    2.2968   -0.6005 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3079    1.1671    0.2437 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6704    1.3865   -1.3447 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3520   -0.7584   -1.3123 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5960   -0.9958    0.8204 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4524   -2.2837    0.5187 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8040   -1.0411    3.0488 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1907   -3.0624    2.6994 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7713   -2.1448    0.8210 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3584   -0.5706    0.2577 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2088   -0.9099    1.9866 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1817    1.4770    0.8087 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9050    0.9773    2.4592 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5562    1.4441    2.2030 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0842    0.2117   -1.0603 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5874   -2.7758   -0.6768 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0786   -2.0265   -1.2350 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5518   -2.0755   -2.7393 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9960   -2.7899   -3.1684 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8155   -1.0287   -3.1847 H   0  0  0  0  0  0  0  0  0  0  0  0
  6 16  1  0
 19 18  1  0
 13 17  1  0
 10 11  1  0
 17  8  1  0
 16  2  1  0
  2  3  1  0
  3  5  1  0
  6  5  1  0
 11 13  1  0
  3  4  2  0
 13 15  1  0
  8  9  1  0
 17 18  1  0
  2  1  2  3
  8  7  1  0
 13 14  1  6
 15 16  1  0
 17 36  1  6
  7  6  1  0
 11 12  1  0
 10  9  1  0
 19 39  1  0
 19 40  1  0
 19 41  1  0
 11 28  1  1
 18 37  1  0
 18 38  1  0
  8 25  1  6
 15 33  1  0
 15 34  1  0
  7 23  1  0
  7 24  1  0
  6 22  1  6
 16 35  1  1
  9 26  1  0
  9 27  1  0
  1 20  1  0
  1 21  1  0
 14 30  1  0
 14 31  1  0
 14 32  1  0
 12 29  1  0
M  END


  Mrv1652306212100533D          

 41 43  0  0  0  0            999 V2000
   -1.3077    3.7715    2.8556 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4266    3.2733    1.9794 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5216    4.1468    1.2479 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7597    5.3166    1.4791 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0951    3.3921    0.2727 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3921    2.1433    0.1584 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3733    1.0890   -0.3281 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8988   -0.3785   -0.3907 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5251   -1.2111    0.7339 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9285   -0.9259    1.9914 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4429   -1.2821    2.0419 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.5666   -2.6844    1.8866 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2887   -0.5016    0.9959 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.7353   -1.0675    1.0100 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4441    0.9866    1.4614 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1948    1.8660    1.5269 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6424   -0.5837   -0.4456 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9914   -1.9036   -1.1997 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5298   -1.9424   -2.6544 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0046    3.1405    3.3950 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3425    4.8385    3.0650 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3869    2.2968   -0.6005 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3079    1.1671    0.2437 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6704    1.3865   -1.3447 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3520   -0.7584   -1.3123 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5960   -0.9958    0.8204 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4524   -2.2837    0.5187 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8040   -1.0411    3.0488 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1907   -3.0624    2.6994 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7713   -2.1448    0.8210 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3584   -0.5706    0.2577 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2088   -0.9099    1.9866 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1817    1.4770    0.8087 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9050    0.9773    2.4592 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5562    1.4441    2.2030 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0842    0.2117   -1.0603 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5874   -2.7758   -0.6768 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0786   -2.0265   -1.2350 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5518   -2.0755   -2.7393 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9960   -2.7899   -3.1684 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8155   -1.0287   -3.1847 H   0  0  0  0  0  0  0  0  0  0  0  0
  6 16  1  0  0  0  0
 19 18  1  0  0  0  0
 13 17  1  0  0  0  0
 10 11  1  0  0  0  0
 17  8  1  0  0  0  0
 16  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  5  1  0  0  0  0
  6  5  1  0  0  0  0
 11 13  1  0  0  0  0
  3  4  2  0  0  0  0
 13 15  1  0  0  0  0
  8  9  1  0  0  0  0
 17 18  1  0  0  0  0
  2  1  2  3  0  0  0
  8  7  1  0  0  0  0
 13 14  1  6  0  0  0
 15 16  1  0  0  0  0
 17 36  1  6  0  0  0
  7  6  1  0  0  0  0
 11 12  1  0  0  0  0
 10  9  1  0  0  0  0
 19 39  1  0  0  0  0
 19 40  1  0  0  0  0
 19 41  1  0  0  0  0
 11 28  1  1  0  0  0
 18 37  1  0  0  0  0
 18 38  1  0  0  0  0
  8 25  1  6  0  0  0
 15 33  1  0  0  0  0
 15 34  1  0  0  0  0
  7 23  1  0  0  0  0
  7 24  1  0  0  0  0
  6 22  1  6  0  0  0
 16 35  1  1  0  0  0
  9 26  1  0  0  0  0
  9 27  1  0  0  0  0
  1 20  1  0  0  0  0
  1 21  1  0  0  0  0
 14 30  1  0  0  0  0
 14 31  1  0  0  0  0
 14 32  1  0  0  0  0
 12 29  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0040839

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@@]1([H])OC([H])([H])[C@]2([H])C([H])([H])[C@]3([H])OC(=O)C(=C([H])[H])[C@@]3([H])C([H])([H])[C@@]1(C([H])([H])[H])[C@]2([H])C([H])([H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C15H22O4/c1-4-11-9-5-12-10(8(2)13(16)19-12)6-15(11,3)14(17)18-7-9/h9-12,14,17H,2,4-7H2,1,3H3/t9-,10+,11+,12-,14-,15-/m0/s1

> <INCHI_KEY>
TZHQBINEZIOIBW-ZVUGODGUSA-N

> <FORMULA>
C15H22O4

> <MOLECULAR_WEIGHT>
266.337

> <EXACT_MASS>
266.151809188

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
41

> <JCHEM_AVERAGE_POLARIZABILITY>
28.550778960456626

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,3S,7R,9S,10S,13R)-13-ethyl-10-hydroxy-9-methyl-6-methylidene-4,11-dioxatricyclo[7.3.1.0^{3,7}]tridecan-5-one

> <ALOGPS_LOGP>
1.61

> <JCHEM_LOGP>
2.327330622999999

> <ALOGPS_LOGS>
-2.15

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.961932168402512

> <JCHEM_PKA_STRONGEST_BASIC>
-4.127650869540742

> <JCHEM_POLAR_SURFACE_AREA>
55.760000000000005

> <JCHEM_REFRACTIVITY>
69.36829999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.90e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,3S,7R,9S,10S,13R)-13-ethyl-10-hydroxy-9-methyl-6-methylidene-4,11-dioxatricyclo[7.3.1.0^{3,7}]tridecan-5-one

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 41 43  0  0  0  0  0  0  0  0999 V2000
   -1.3077    3.7715    2.8556 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4266    3.2733    1.9794 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5216    4.1468    1.2479 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7597    5.3166    1.4791 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0951    3.3921    0.2727 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3921    2.1433    0.1584 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3733    1.0890   -0.3281 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8988   -0.3785   -0.3907 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5251   -1.2111    0.7339 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9285   -0.9259    1.9914 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4429   -1.2821    2.0419 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.5666   -2.6844    1.8866 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2887   -0.5016    0.9959 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.7353   -1.0675    1.0100 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4441    0.9866    1.4614 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1948    1.8660    1.5269 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6424   -0.5837   -0.4456 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9914   -1.9036   -1.1997 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5298   -1.9424   -2.6544 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0046    3.1405    3.3950 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3425    4.8385    3.0650 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3869    2.2968   -0.6005 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3079    1.1671    0.2437 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6704    1.3865   -1.3447 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3520   -0.7584   -1.3123 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5960   -0.9958    0.8204 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4524   -2.2837    0.5187 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8040   -1.0411    3.0488 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1907   -3.0624    2.6994 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7713   -2.1448    0.8210 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3584   -0.5706    0.2577 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2088   -0.9099    1.9866 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1817    1.4770    0.8087 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9050    0.9773    2.4592 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5562    1.4441    2.2030 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0842    0.2117   -1.0603 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5874   -2.7758   -0.6768 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0786   -2.0265   -1.2350 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5518   -2.0755   -2.7393 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9960   -2.7899   -3.1684 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8155   -1.0287   -3.1847 H   0  0  0  0  0  0  0  0  0  0  0  0
  6 16  1  0
 19 18  1  0
 13 17  1  0
 10 11  1  0
 17  8  1  0
 16  2  1  0
  2  3  1  0
  3  5  1  0
  6  5  1  0
 11 13  1  0
  3  4  2  0
 13 15  1  0
  8  9  1  0
 17 18  1  0
  2  1  2  3
  8  7  1  0
 13 14  1  6
 15 16  1  0
 17 36  1  6
  7  6  1  0
 11 12  1  0
 10  9  1  0
 19 39  1  0
 19 40  1  0
 19 41  1  0
 11 28  1  1
 18 37  1  0
 18 38  1  0
  8 25  1  6
 15 33  1  0
 15 34  1  0
  7 23  1  0
  7 24  1  0
  6 22  1  6
 16 35  1  1
  9 26  1  0
  9 27  1  0
  1 20  1  0
  1 21  1  0
 14 30  1  0
 14 31  1  0
 14 32  1  0
 12 29  1  0
M  END

HEADER    PROTEIN                                 21-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   21-JUN-21         0                                  
HETATM    1  C   UNK     0      -1.308   3.772   2.856  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.427   3.273   1.979  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.522   4.147   1.248  0.00  0.00           C+0
HETATM    4  O   UNK     0       0.760   5.317   1.479  0.00  0.00           O+0
HETATM    5  O   UNK     0       1.095   3.392   0.273  0.00  0.00           O+0
HETATM    6  C   UNK     0       0.392   2.143   0.158  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.373   1.089  -0.328  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.899  -0.379  -0.391  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.525  -1.211   0.734  0.00  0.00           C+0
HETATM   10  O   UNK     0       0.929  -0.926   1.991  0.00  0.00           O+0
HETATM   11  C   UNK     0      -0.443  -1.282   2.042  0.00  0.00           C+0
HETATM   12  O   UNK     0      -0.567  -2.684   1.887  0.00  0.00           O+0
HETATM   13  C   UNK     0      -1.289  -0.502   0.996  0.00  0.00           C+0
HETATM   14  C   UNK     0      -2.735  -1.067   1.010  0.00  0.00           C+0
HETATM   15  C   UNK     0      -1.444   0.987   1.461  0.00  0.00           C+0
HETATM   16  C   UNK     0      -0.195   1.866   1.527  0.00  0.00           C+0
HETATM   17  C   UNK     0      -0.642  -0.584  -0.446  0.00  0.00           C+0
HETATM   18  C   UNK     0      -0.991  -1.904  -1.200  0.00  0.00           C+0
HETATM   19  C   UNK     0      -0.530  -1.942  -2.654  0.00  0.00           C+0
HETATM   20  H   UNK     0      -2.005   3.140   3.395  0.00  0.00           H+0
HETATM   21  H   UNK     0      -1.343   4.838   3.065  0.00  0.00           H+0
HETATM   22  H   UNK     0      -0.387   2.297  -0.601  0.00  0.00           H+0
HETATM   23  H   UNK     0       2.308   1.167   0.244  0.00  0.00           H+0
HETATM   24  H   UNK     0       1.670   1.387  -1.345  0.00  0.00           H+0
HETATM   25  H   UNK     0       1.352  -0.758  -1.312  0.00  0.00           H+0
HETATM   26  H   UNK     0       2.596  -0.996   0.820  0.00  0.00           H+0
HETATM   27  H   UNK     0       1.452  -2.284   0.519  0.00  0.00           H+0
HETATM   28  H   UNK     0      -0.804  -1.041   3.049  0.00  0.00           H+0
HETATM   29  H   UNK     0      -0.191  -3.062   2.699  0.00  0.00           H+0
HETATM   30  H   UNK     0      -2.771  -2.145   0.821  0.00  0.00           H+0
HETATM   31  H   UNK     0      -3.358  -0.571   0.258  0.00  0.00           H+0
HETATM   32  H   UNK     0      -3.209  -0.910   1.987  0.00  0.00           H+0
HETATM   33  H   UNK     0      -2.182   1.477   0.809  0.00  0.00           H+0
HETATM   34  H   UNK     0      -1.905   0.977   2.459  0.00  0.00           H+0
HETATM   35  H   UNK     0       0.556   1.444   2.203  0.00  0.00           H+0
HETATM   36  H   UNK     0      -1.084   0.212  -1.060  0.00  0.00           H+0
HETATM   37  H   UNK     0      -0.587  -2.776  -0.677  0.00  0.00           H+0
HETATM   38  H   UNK     0      -2.079  -2.026  -1.235  0.00  0.00           H+0
HETATM   39  H   UNK     0       0.552  -2.075  -2.739  0.00  0.00           H+0
HETATM   40  H   UNK     0      -0.996  -2.790  -3.168  0.00  0.00           H+0
HETATM   41  H   UNK     0      -0.816  -1.029  -3.185  0.00  0.00           H+0
CONECT    1    2   20   21                                                  
CONECT    2   16    3    1                                                  
CONECT    3    2    5    4                                                  
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6   16    5    7   22                                             
CONECT    7    8    6   23   24                                             
CONECT    8   17    9    7   25                                             
CONECT    9    8   10   26   27                                             
CONECT   10   11    9                                                       
CONECT   11   10   13   12   28                                             
CONECT   12   11   29                                                       
CONECT   13   17   11   15   14                                             
CONECT   14   13   30   31   32                                             
CONECT   15   13   16   33   34                                             
CONECT   16    6    2   15   35                                             
CONECT   17   13    8   18   36                                             
CONECT   18   19   17   37   38                                             
CONECT   19   18   39   40   41                                             
CONECT   20    1                                                            
CONECT   21    1                                                            
CONECT   22    6                                                            
CONECT   23    7                                                            
CONECT   24    7                                                            
CONECT   25    8                                                            
CONECT   26    9                                                            
CONECT   27    9                                                            
CONECT   28   11                                                            
CONECT   29   12                                                            
CONECT   30   14                                                            
CONECT   31   14                                                            
CONECT   32   14                                                            
CONECT   33   15                                                            
CONECT   34   15                                                            
CONECT   35   16                                                            
CONECT   36   17                                                            
CONECT   37   18                                                            
CONECT   38   18                                                            
CONECT   39   19                                                            
CONECT   40   19                                                            
CONECT   41   19                                                            
MASTER        0    0    0    0    0    0    0    0   41    0   86    0
END

RDKit          3D

41 43  0  0  0  0  0  0  0  0999 V2000
   -1.3077    3.7715    2.8556 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4266    3.2733    1.9794 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5216    4.1468    1.2479 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7597    5.3166    1.4791 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0951    3.3921    0.2727 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3921    2.1433    0.1584 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3733    1.0890   -0.3281 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8988   -0.3785   -0.3907 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5251   -1.2111    0.7339 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9285   -0.9259    1.9914 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4429   -1.2821    2.0419 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.5666   -2.6844    1.8866 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2887   -0.5016    0.9959 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.7353   -1.0675    1.0100 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4441    0.9866    1.4614 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1948    1.8660    1.5269 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6424   -0.5837   -0.4456 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9914   -1.9036   -1.1997 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5298   -1.9424   -2.6544 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0046    3.1405    3.3950 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3425    4.8385    3.0650 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3869    2.2968   -0.6005 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3079    1.1671    0.2437 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6704    1.3865   -1.3447 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3520   -0.7584   -1.3123 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5960   -0.9958    0.8204 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4524   -2.2837    0.5187 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8040   -1.0411    3.0488 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1907   -3.0624    2.6994 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7713   -2.1448    0.8210 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3584   -0.5706    0.2577 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2088   -0.9099    1.9866 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1817    1.4770    0.8087 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9050    0.9773    2.4592 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5562    1.4441    2.2030 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0842    0.2117   -1.0603 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5874   -2.7758   -0.6768 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0786   -2.0265   -1.2350 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5518   -2.0755   -2.7393 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9960   -2.7899   -3.1684 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8155   -1.0287   -3.1847 H   0  0  0  0  0  0  0  0  0  0  0  0
  6 16  1  0
 19 18  1  0
 13 17  1  0
 10 11  1  0
 17  8  1  0
 16  2  1  0
  2  3  1  0
  3  5  1  0
  6  5  1  0
 11 13  1  0
  3  4  2  0
 13 15  1  0
  8  9  1  0
 17 18  1  0
  2  1  2  3
  8  7  1  0
 13 14  1  6
 15 16  1  0
 17 36  1  6
  7  6  1  0
 11 12  1  0
 10  9  1  0
 19 39  1  0
 19 40  1  0
 19 41  1  0
 11 28  1  1
 18 37  1  0
 18 38  1  0
  8 25  1  6
 15 33  1  0
 15 34  1  0
  7 23  1  0
  7 24  1  0
  6 22  1  6
 16 35  1  1
  9 26  1  0
  9 27  1  0
  1 20  1  0
  1 21  1  0
 14 30  1  0
 14 31  1  0
 14 32  1  0
 12 29  1  0
M  END

View in JSmol View DFT Assignments 3D Conformers

Synonyms

Not Available

Chemical Formula

C₁₅H₂₂O₄

Average Mass

266.3370 Da

Monoisotopic Mass

266.15181 Da

IUPAC Name

(1R,3S,7R,9S,10S,13R)-13-ethyl-10-hydroxy-9-methyl-6-methylidene-4,11-dioxatricyclo[7.3.1.0^{3,7}]tridecan-5-one

Traditional Name

(1R,3S,7R,9S,10S,13R)-13-ethyl-10-hydroxy-9-methyl-6-methylidene-4,11-dioxatricyclo[7.3.1.0^{3,7}]tridecan-5-one

CAS Registry Number

Not Available

SMILES

[H]O[C@@]1([H])OC([H])([H])[C@]2([H])C([H])([H])[C@]3([H])OC(=O)C(=C([H])[H])[C@@]3([H])C([H])([H])[C@@]1(C([H])([H])[H])[C@]2([H])C([H])([H])C([H])([H])[H]

InChI Identifier

InChI=1S/C15H22O4/c1-4-11-9-5-12-10(8(2)13(16)19-12)6-15(11,3)14(17)18-7-9/h9-12,14,17H,2,4-7H2,1,3H3/t9-,10+,11+,12-,14-,15-/m0/s1

InChI Key

TZHQBINEZIOIBW-ZVUGODGUSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 125 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 150 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 175 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 225 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 250 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Dugaldia hoopesii	Plant	KNApSAcK
Hymenoxys odorata	Plant	KNApSAcK
Hymenoxys richardsonii	Plant	KNApSAcK
Hymenoxys robusta	JEOL database	Fortuna, A. M., et al, Phytochem. 72, 2413 (2011)

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.61	ALOGPS
logP	2.33	ChemAxon
logS	-2.2	ALOGPS
pKa (Strongest Acidic)	11.96	ChemAxon
pKa (Strongest Basic)	-4.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	55.76 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	69.37 m³·mol⁻¹	ChemAxon
Polarizability	28.55 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

Fortuna, A. M., et al. (2011). Fortuna, A. M., et al, Phytochem. 72, 2413 (2011). Phytochem..

Showing NP-Card for hymenolide (NP0040839)

MOL for NP0040839 (hymenolide)

3D MOL for NP0040839 (hymenolide)

3D SDF for NP0040839 (hymenolide)

3D-SDF for NP0040839 (hymenolide)

PDB for NP0040839 (hymenolide)

3D PDB for NP0040839 (hymenolide)

SMILES for NP0040839 (hymenolide)

INCHI for NP0040839 (hymenolide)

Structure for NP0040839 (hymenolide)

3D Structure for NP0040839 (hymenolide)