NP-MRD: Showing NP-Card for (+)-afzelechin-3-O-beta-allopyranoside (NP0040788)

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Record Information

Version

2.0

Created at

2021-06-20 22:51:39 UTC

Updated at

2021-06-30 00:14:54 UTC

NP-MRD ID

NP0040788

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(+)-afzelechin-3-O-beta-allopyranoside

Provided By

JEOL Database JEOL Logo

Description

(+)-afzelechin-3-O-beta-allopyranoside is found in Arthromeris mairei, Cassia fistula , Drynaria fortunei and Smilax bockii. (+)-afzelechin-3-O-beta-allopyranoside was first documented in 2011 (Liang, Y.-h., et al.).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306212100513D          

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M  END

     RDKit          3D

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  Mrv1652306212100513D          

 55 58  0  0  0  0            999 V2000
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   -0.0673    6.5932    1.9455 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1493    6.7060    2.2405 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1941    4.9598    2.4260 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2175    2.9475    2.0719 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6660    0.6961    2.7667 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5387   -0.0226   -0.4200 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9269   -2.3167   -1.2495 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3530   -5.1143    0.2033 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3489   -3.8759    1.8194 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0474   -1.5997    2.6587 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3722   -0.9507    0.7612 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6481    1.0992    1.7773 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2528   -0.8015   -0.8269 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1055    1.4689   -0.9536 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4200   -2.1409   -1.7100 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6515   -0.2576   -3.3906 H   0  0  0  0  0  0  0  0  0  0  0  0
 30  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
 30 31  1  0  0  0  0
 28 29  1  0  0  0  0
 16 17  1  0  0  0  0
  9  8  1  0  0  0  0
  8  7  1  0  0  0  0
  7 18  1  0  0  0  0
 18 17  1  0  0  0  0
 26 27  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
  5 26  1  0  0  0  0
 20 21  1  0  0  0  0
 13 12  2  0  0  0  0
 21 22  2  0  0  0  0
 26 28  1  0  0  0  0
 22 24  1  0  0  0  0
 12 10  1  0  0  0  0
 24 25  2  0  0  0  0
 25 19  1  0  0  0  0
 10  9  2  0  0  0  0
 13 14  1  0  0  0  0
 28 30  1  0  0  0  0
 10 11  1  0  0  0  0
  7  6  1  0  0  0  0
 16 15  2  0  0  0  0
 22 23  1  0  0  0  0
 15 13  1  0  0  0  0
  3  2  1  0  0  0  0
 16  9  1  0  0  0  0
  2  1  1  0  0  0  0
  5  6  1  0  0  0  0
  5 36  1  6  0  0  0
 30 54  1  1  0  0  0
 31 55  1  0  0  0  0
 28 52  1  1  0  0  0
 29 53  1  0  0  0  0
 26 50  1  1  0  0  0
 27 51  1  0  0  0  0
  3 35  1  6  0  0  0
 12 41  1  0  0  0  0
 15 43  1  0  0  0  0
  8 38  1  0  0  0  0
  8 39  1  0  0  0  0
  7 37  1  6  0  0  0
 18 44  1  1  0  0  0
 20 45  1  0  0  0  0
 21 46  1  0  0  0  0
 24 48  1  0  0  0  0
 25 49  1  0  0  0  0
 14 42  1  0  0  0  0
 11 40  1  0  0  0  0
 23 47  1  0  0  0  0
  2 33  1  0  0  0  0
  2 34  1  0  0  0  0
  1 32  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0040788

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C([H])C([H])=C(C([H])=C1[H])[C@@]1([H])OC2=C([H])C(O[H])=C([H])C(O[H])=C2C([H])([H])[C@]1([H])O[C@@]1([H])O[C@@]([H])(C([H])([H])O[H])[C@]([H])(O[H])[C@]([H])(O[H])[C@]1([H])O[H]

> <INCHI_IDENTIFIER>
InChI=1S/C21H24O10/c22-8-16-17(26)18(27)19(28)21(31-16)30-15-7-12-13(25)5-11(24)6-14(12)29-20(15)9-1-3-10(23)4-2-9/h1-6,15-28H,7-8H2/t15-,16-,17-,18-,19-,20+,21-/m0/s1

> <INCHI_KEY>
XWMNERHJDTUVJN-YGIASRBBSA-N

> <FORMULA>
C21H24O10

> <MOLECULAR_WEIGHT>
436.413

> <EXACT_MASS>
436.136946973

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_ATOM_COUNT>
55

> <JCHEM_AVERAGE_POLARIZABILITY>
42.860947628896255

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
7

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2S,3S,4S,5R,6S)-2-{[(2R,3S)-5,7-dihydroxy-2-(4-hydroxyphenyl)-3,4-dihydro-2H-1-benzopyran-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

> <ALOGPS_LOGP>
-0.02

> <JCHEM_LOGP>
0.3278366913333333

> <ALOGPS_LOGS>
-2.38

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.730403638567623

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.148488323137016

> <JCHEM_PKA_STRONGEST_BASIC>
-2.981083556126551

> <JCHEM_POLAR_SURFACE_AREA>
169.29999999999998

> <JCHEM_REFRACTIVITY>
104.4321

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.80e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3S,4S,5R,6S)-2-{[(2R,3S)-5,7-dihydroxy-2-(4-hydroxyphenyl)-3,4-dihydro-2H-1-benzopyran-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 55 58  0  0  0  0  0  0  0  0999 V2000
   -0.9162   -2.6309   -2.4041 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2141   -1.4345   -3.1260 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1027   -0.5079   -2.2855 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4273   -0.3091   -1.0318 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1307    0.5722   -0.1661 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4112    0.7178    1.0654 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1785    1.4409    0.8971 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3988    2.8543    1.4340 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8930    3.5682    1.6896 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9224    4.9569    1.8672 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2541    5.6503    1.7993 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1183    5.6297    2.1070 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3002    4.9035    2.1750 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4552    5.5913    2.4055 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2984    3.5225    2.0160 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0917    2.8569    1.7883 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1866    1.5018    1.6417 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9494    0.7721    1.7073 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.2259   -0.6374    1.1936 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0566   -0.8587    0.0821 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2801   -2.1517   -0.3924 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6673   -3.2297    0.2326 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9082   -4.4733   -0.2698 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8328   -3.0380    1.3278 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6135   -1.7437    1.8065 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5045   -0.0185    0.1985 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.2443    0.8922    1.0300 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3109   -0.2947   -1.0656 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.6915    0.9553   -1.6798 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5048   -1.1125   -2.0796 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.2228   -1.1360   -3.3195 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4750   -2.3373   -1.5819 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6881   -1.7051   -4.0738 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2582   -0.9466   -3.3448 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1770    0.4524   -2.8122 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2421    1.5636   -0.6248 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1210    1.4997   -0.1592 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9724    2.8159    2.3695 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0134    3.4079    0.7133 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0673    6.5932    1.9455 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1493    6.7060    2.2405 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1941    4.9598    2.4260 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2175    2.9475    2.0719 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6660    0.6961    2.7667 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5387   -0.0226   -0.4200 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9269   -2.3167   -1.2495 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3530   -5.1143    0.2033 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3489   -3.8759    1.8194 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0474   -1.5997    2.6587 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3722   -0.9507    0.7612 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6481    1.0992    1.7773 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2528   -0.8015   -0.8269 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1055    1.4689   -0.9536 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4200   -2.1409   -1.7100 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6515   -0.2576   -3.3906 H   0  0  0  0  0  0  0  0  0  0  0  0
 30  3  1  0
  3  4  1  0
  4  5  1  0
 30 31  1  0
 28 29  1  0
 16 17  1  0
  9  8  1  0
  8  7  1  0
  7 18  1  0
 18 17  1  0
 26 27  1  0
 18 19  1  0
 19 20  2  0
  5 26  1  0
 20 21  1  0
 13 12  2  0
 21 22  2  0
 26 28  1  0
 22 24  1  0
 12 10  1  0
 24 25  2  0
 25 19  1  0
 10  9  2  0
 13 14  1  0
 28 30  1  0
 10 11  1  0
  7  6  1  0
 16 15  2  0
 22 23  1  0
 15 13  1  0
  3  2  1  0
 16  9  1  0
  2  1  1  0
  5  6  1  0
  5 36  1  6
 30 54  1  1
 31 55  1  0
 28 52  1  1
 29 53  1  0
 26 50  1  1
 27 51  1  0
  3 35  1  6
 12 41  1  0
 15 43  1  0
  8 38  1  0
  8 39  1  0
  7 37  1  6
 18 44  1  1
 20 45  1  0
 21 46  1  0
 24 48  1  0
 25 49  1  0
 14 42  1  0
 11 40  1  0
 23 47  1  0
  2 33  1  0
  2 34  1  0
  1 32  1  0
M  END

HEADER    PROTEIN                                 21-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   21-JUN-21         0                                  
HETATM    1  O   UNK     0      -0.916  -2.631  -2.404  0.00  0.00           O+0
HETATM    2  C   UNK     0      -1.214  -1.435  -3.126  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.103  -0.508  -2.285  0.00  0.00           C+0
HETATM    4  O   UNK     0      -1.427  -0.309  -1.032  0.00  0.00           O+0
HETATM    5  C   UNK     0      -2.131   0.572  -0.166  0.00  0.00           C+0
HETATM    6  O   UNK     0      -1.411   0.718   1.065  0.00  0.00           O+0
HETATM    7  C   UNK     0      -0.179   1.441   0.897  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.399   2.854   1.434  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.893   3.568   1.690  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.922   4.957   1.867  0.00  0.00           C+0
HETATM   11  O   UNK     0      -0.254   5.650   1.799  0.00  0.00           O+0
HETATM   12  C   UNK     0       2.118   5.630   2.107  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.300   4.904   2.175  0.00  0.00           C+0
HETATM   14  O   UNK     0       4.455   5.591   2.406  0.00  0.00           O+0
HETATM   15  C   UNK     0       3.298   3.523   2.016  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.092   2.857   1.788  0.00  0.00           C+0
HETATM   17  O   UNK     0       2.187   1.502   1.642  0.00  0.00           O+0
HETATM   18  C   UNK     0       0.949   0.772   1.707  0.00  0.00           C+0
HETATM   19  C   UNK     0       1.226  -0.637   1.194  0.00  0.00           C+0
HETATM   20  C   UNK     0       2.057  -0.859   0.082  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.280  -2.152  -0.392  0.00  0.00           C+0
HETATM   22  C   UNK     0       1.667  -3.230   0.233  0.00  0.00           C+0
HETATM   23  O   UNK     0       1.908  -4.473  -0.270  0.00  0.00           O+0
HETATM   24  C   UNK     0       0.833  -3.038   1.328  0.00  0.00           C+0
HETATM   25  C   UNK     0       0.614  -1.744   1.807  0.00  0.00           C+0
HETATM   26  C   UNK     0      -3.505  -0.019   0.199  0.00  0.00           C+0
HETATM   27  O   UNK     0      -4.244   0.892   1.030  0.00  0.00           O+0
HETATM   28  C   UNK     0      -4.311  -0.295  -1.066  0.00  0.00           C+0
HETATM   29  O   UNK     0      -4.691   0.955  -1.680  0.00  0.00           O+0
HETATM   30  C   UNK     0      -3.505  -1.113  -2.080  0.00  0.00           C+0
HETATM   31  O   UNK     0      -4.223  -1.136  -3.320  0.00  0.00           O+0
HETATM   32  H   UNK     0      -0.475  -2.337  -1.582  0.00  0.00           H+0
HETATM   33  H   UNK     0      -1.688  -1.705  -4.074  0.00  0.00           H+0
HETATM   34  H   UNK     0      -0.258  -0.947  -3.345  0.00  0.00           H+0
HETATM   35  H   UNK     0      -2.177   0.452  -2.812  0.00  0.00           H+0
HETATM   36  H   UNK     0      -2.242   1.564  -0.625  0.00  0.00           H+0
HETATM   37  H   UNK     0       0.121   1.500  -0.159  0.00  0.00           H+0
HETATM   38  H   UNK     0      -0.972   2.816   2.369  0.00  0.00           H+0
HETATM   39  H   UNK     0      -1.013   3.408   0.713  0.00  0.00           H+0
HETATM   40  H   UNK     0      -0.067   6.593   1.946  0.00  0.00           H+0
HETATM   41  H   UNK     0       2.149   6.706   2.240  0.00  0.00           H+0
HETATM   42  H   UNK     0       5.194   4.960   2.426  0.00  0.00           H+0
HETATM   43  H   UNK     0       4.218   2.947   2.072  0.00  0.00           H+0
HETATM   44  H   UNK     0       0.666   0.696   2.767  0.00  0.00           H+0
HETATM   45  H   UNK     0       2.539  -0.023  -0.420  0.00  0.00           H+0
HETATM   46  H   UNK     0       2.927  -2.317  -1.250  0.00  0.00           H+0
HETATM   47  H   UNK     0       1.353  -5.114   0.203  0.00  0.00           H+0
HETATM   48  H   UNK     0       0.349  -3.876   1.819  0.00  0.00           H+0
HETATM   49  H   UNK     0      -0.047  -1.600   2.659  0.00  0.00           H+0
HETATM   50  H   UNK     0      -3.372  -0.951   0.761  0.00  0.00           H+0
HETATM   51  H   UNK     0      -3.648   1.099   1.777  0.00  0.00           H+0
HETATM   52  H   UNK     0      -5.253  -0.802  -0.827  0.00  0.00           H+0
HETATM   53  H   UNK     0      -5.106   1.469  -0.954  0.00  0.00           H+0
HETATM   54  H   UNK     0      -3.420  -2.141  -1.710  0.00  0.00           H+0
HETATM   55  H   UNK     0      -4.652  -0.258  -3.391  0.00  0.00           H+0
CONECT    1    2   32                                                       
CONECT    2    3    1   33   34                                             
CONECT    3   30    4    2   35                                             
CONECT    4    3    5                                                       
CONECT    5    4   26    6   36                                             
CONECT    6    7    5                                                       
CONECT    7    8   18    6   37                                             
CONECT    8    9    7   38   39                                             
CONECT    9    8   10   16                                                  
CONECT   10   12    9   11                                                  
CONECT   11   10   40                                                       
CONECT   12   13   10   41                                                  
CONECT   13   12   14   15                                                  
CONECT   14   13   42                                                       
CONECT   15   16   13   43                                                  
CONECT   16   17   15    9                                                  
CONECT   17   16   18                                                       
CONECT   18    7   17   19   44                                             
CONECT   19   18   20   25                                                  
CONECT   20   19   21   45                                                  
CONECT   21   20   22   46                                                  
CONECT   22   21   24   23                                                  
CONECT   23   22   47                                                       
CONECT   24   22   25   48                                                  
CONECT   25   24   19   49                                                  
CONECT   26   27    5   28   50                                             
CONECT   27   26   51                                                       
CONECT   28   29   26   30   52                                             
CONECT   29   28   53                                                       
CONECT   30    3   31   28   54                                             
CONECT   31   30   55                                                       
CONECT   32    1                                                            
CONECT   33    2                                                            
CONECT   34    2                                                            
CONECT   35    3                                                            
CONECT   36    5                                                            
CONECT   37    7                                                            
CONECT   38    8                                                            
CONECT   39    8                                                            
CONECT   40   11                                                            
CONECT   41   12                                                            
CONECT   42   14                                                            
CONECT   43   15                                                            
CONECT   44   18                                                            
CONECT   45   20                                                            
CONECT   46   21                                                            
CONECT   47   23                                                            
CONECT   48   24                                                            
CONECT   49   25                                                            
CONECT   50   26                                                            
CONECT   51   27                                                            
CONECT   52   28                                                            
CONECT   53   29                                                            
CONECT   54   30                                                            
CONECT   55   31                                                            
MASTER        0    0    0    0    0    0    0    0   55    0  116    0
END

RDKit          3D

55 58  0  0  0  0  0  0  0  0999 V2000
   -0.9162   -2.6309   -2.4041 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2141   -1.4345   -3.1260 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1027   -0.5079   -2.2855 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4273   -0.3091   -1.0318 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1307    0.5722   -0.1661 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4112    0.7178    1.0654 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1785    1.4409    0.8971 C   0  0  1  0  0  0  0  0  0  0  0  0
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    0.9224    4.9569    1.8672 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2541    5.6503    1.7993 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1183    5.6297    2.1070 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3002    4.9035    2.1750 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4552    5.5913    2.4055 O   0  0  0  0  0  0  0  0  0  0  0  0
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    1.2259   -0.6374    1.1936 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0566   -0.8587    0.0821 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2801   -2.1517   -0.3924 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6673   -3.2297    0.2326 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9082   -4.4733   -0.2698 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8328   -3.0380    1.3278 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6135   -1.7437    1.8065 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5045   -0.0185    0.1985 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.2443    0.8922    1.0300 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3109   -0.2947   -1.0656 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.6915    0.9553   -1.6798 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5048   -1.1125   -2.0796 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.2228   -1.1360   -3.3195 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4750   -2.3373   -1.5819 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6881   -1.7051   -4.0738 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2582   -0.9466   -3.3448 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1770    0.4524   -2.8122 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2421    1.5636   -0.6248 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1210    1.4997   -0.1592 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9724    2.8159    2.3695 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0134    3.4079    0.7133 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0673    6.5932    1.9455 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1493    6.7060    2.2405 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1941    4.9598    2.4260 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2175    2.9475    2.0719 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6660    0.6961    2.7667 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5387   -0.0226   -0.4200 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9269   -2.3167   -1.2495 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3530   -5.1143    0.2033 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3489   -3.8759    1.8194 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0474   -1.5997    2.6587 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3722   -0.9507    0.7612 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6481    1.0992    1.7773 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2528   -0.8015   -0.8269 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1055    1.4689   -0.9536 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4200   -2.1409   -1.7100 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6515   -0.2576   -3.3906 H   0  0  0  0  0  0  0  0  0  0  0  0
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  3  4  1  0
  4  5  1  0
 30 31  1  0
 28 29  1  0
 16 17  1  0
  9  8  1  0
  8  7  1  0
  7 18  1  0
 18 17  1  0
 26 27  1  0
 18 19  1  0
 19 20  2  0
  5 26  1  0
 20 21  1  0
 13 12  2  0
 21 22  2  0
 26 28  1  0
 22 24  1  0
 12 10  1  0
 24 25  2  0
 25 19  1  0
 10  9  2  0
 13 14  1  0
 28 30  1  0
 10 11  1  0
  7  6  1  0
 16 15  2  0
 22 23  1  0
 15 13  1  0
  3  2  1  0
 16  9  1  0
  2  1  1  0
  5  6  1  0
  5 36  1  6
 30 54  1  1
 31 55  1  0
 28 52  1  1
 29 53  1  0
 26 50  1  1
 27 51  1  0
  3 35  1  6
 12 41  1  0
 15 43  1  0
  8 38  1  0
  8 39  1  0
  7 37  1  6
 18 44  1  1
 20 45  1  0
 21 46  1  0
 24 48  1  0
 25 49  1  0
 14 42  1  0
 11 40  1  0
 23 47  1  0
  2 33  1  0
  2 34  1  0
  1 32  1  0
M  END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₁H₂₄O₁₀

Average Mass

436.4130 Da

Monoisotopic Mass

436.13695 Da

IUPAC Name

(2S,3S,4S,5R,6S)-2-{[(2R,3S)-5,7-dihydroxy-2-(4-hydroxyphenyl)-3,4-dihydro-2H-1-benzopyran-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

Traditional Name

(2S,3S,4S,5R,6S)-2-{[(2R,3S)-5,7-dihydroxy-2-(4-hydroxyphenyl)-3,4-dihydro-2H-1-benzopyran-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

CAS Registry Number

Not Available

SMILES

[H]OC1=C([H])C([H])=C(C([H])=C1[H])[C@@]1([H])OC2=C([H])C(O[H])=C([H])C(O[H])=C2C([H])([H])[C@]1([H])O[C@@]1([H])O[C@@]([H])(C([H])([H])O[H])[C@]([H])(O[H])[C@]([H])(O[H])[C@]1([H])O[H]

InChI Identifier

InChI=1S/C21H24O10/c22-8-16-17(26)18(27)19(28)21(31-16)30-15-7-12-13(25)5-11(24)6-14(12)29-20(15)9-1-3-10(23)4-2-9/h1-6,15-28H,7-8H2/t15-,16-,17-,18-,19-,20+,21-/m0/s1

InChI Key

XWMNERHJDTUVJN-YGIASRBBSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Arthromeris mairei	Plant	KNApSAcK
Cassia fistula	Plant	KNApSAcK
Neocheiropteris fortunei	JEOL database	Liang, Y.-h., et al, Phytochem. 72, 1876 (2011)
Smilax bockii	Plant	KNApSAcK

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.02	ALOGPS
logP	0.33	ChemAxon
logS	-2.4	ALOGPS
pKa (Strongest Acidic)	9.15	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	10	ChemAxon
Hydrogen Donor Count	7	ChemAxon
Polar Surface Area	169.3 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	104.43 m³·mol⁻¹	ChemAxon
Polarizability	42.86 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

Liang, Y.-h., et al. (2011). Liang, Y.-h., et al, Phytochem. 72, 1876 (2011). Phytochem..

Showing NP-Card for (+)-afzelechin-3-O-beta-allopyranoside (NP0040788)

MOL for NP0040788 ((+)-afzelechin-3-O-beta-allopyranoside)

3D MOL for NP0040788 ((+)-afzelechin-3-O-beta-allopyranoside)

3D SDF for NP0040788 ((+)-afzelechin-3-O-beta-allopyranoside)

3D-SDF for NP0040788 ((+)-afzelechin-3-O-beta-allopyranoside)

PDB for NP0040788 ((+)-afzelechin-3-O-beta-allopyranoside)

3D PDB for NP0040788 ((+)-afzelechin-3-O-beta-allopyranoside)

SMILES for NP0040788 ((+)-afzelechin-3-O-beta-allopyranoside)

INCHI for NP0040788 ((+)-afzelechin-3-O-beta-allopyranoside)

Structure for NP0040788 ((+)-afzelechin-3-O-beta-allopyranoside)

3D Structure for NP0040788 ((+)-afzelechin-3-O-beta-allopyranoside)