NP-MRD: Showing NP-Card for foliachinenoside F (NP0040688)

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Record Information

Version

2.0

Created at

2021-06-20 22:47:00 UTC

Updated at

2021-06-30 00:14:44 UTC

NP-MRD ID

NP0040688

Secondary Accession Numbers

None

Natural Product Identification

Common Name

foliachinenoside F

Provided By

JEOL Database JEOL Logo

Description

foliachinenoside F is found in Salacia chinensis. foliachinenoside F was first documented in 2011 (Nakamura, S., et al.).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306212100473D          

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M  END

     RDKit          3D

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M  END


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    1.8267    2.9729    0.3103 H   0  0  0  0  0  0  0  0  0  0  0  0
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  2  1  1  1  0  0  0
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 28 19  1  0  0  0  0
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  8  9  1  0  0  0  0
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M  END
> <DATABASE_ID>
NP0040688

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC([H])([H])[C@@]1([H])O[C@@]([H])(OC([H])([H])[C@@]2(C([H])([H])[H])C([H])([H])[C@@]([H])(O[H])[C@]34C([H])([H])C([H])([H])[C@]([H])(O[H])[C@](C([H])([H])[H])(C([H])([H])C([H])([H])[C@]23[H])C4([H])[H])[C@]([H])(O[H])[C@@]([H])(O[H])[C@]1([H])O[H]

> <INCHI_IDENTIFIER>
InChI=1S/C21H36O8/c1-19-5-3-12-20(2,7-14(24)21(12,9-19)6-4-13(19)23)10-28-18-17(27)16(26)15(25)11(8-22)29-18/h11-18,22-27H,3-10H2,1-2H3/t11-,12-,13+,14-,15-,16+,17-,18-,19-,20-,21+/m1/s1

> <INCHI_KEY>
DXUYVYPTPCNDOR-IMHCYBRXSA-N

> <FORMULA>
C21H36O8

> <MOLECULAR_WEIGHT>
416.511

> <EXACT_MASS>
416.241018119

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
65

> <JCHEM_AVERAGE_POLARIZABILITY>
43.517198105746914

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R,3R,4S,5S,6R)-2-{[(1S,2R,4S,5R,8R,9S)-2,9-dihydroxy-4,8-dimethyltricyclo[6.3.1.0^{1,5}]dodecan-4-yl]methoxy}-6-(hydroxymethyl)oxane-3,4,5-triol

> <ALOGPS_LOGP>
-0.77

> <JCHEM_LOGP>
-0.8359136763333321

> <ALOGPS_LOGS>
-1.86

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.187292814919306

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.209455811665078

> <JCHEM_PKA_STRONGEST_BASIC>
-0.8569361286471514

> <JCHEM_POLAR_SURFACE_AREA>
139.84

> <JCHEM_REFRACTIVITY>
102.04229999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
5.70e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2R,3R,4S,5S,6R)-2-{[(1S,2R,4S,5R,8R,9S)-2,9-dihydroxy-4,8-dimethyltricyclo[6.3.1.0^{1,5}]dodecan-4-yl]methoxy}-6-(hydroxymethyl)oxane-3,4,5-triol

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 65 68  0  0  0  0  0  0  0  0999 V2000
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M  END

HEADER    PROTEIN                                 21-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   21-JUN-21         0                                  
HETATM    1  C   UNK     0      -0.105  -1.952   1.161  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.255  -0.624   0.480  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.042  -0.768  -1.049  0.00  0.00           C+0
HETATM    4  O   UNK     0      -1.331  -1.044  -1.337  0.00  0.00           O+0
HETATM    5  C   UNK     0      -1.812  -0.294  -2.457  0.00  0.00           C+0
HETATM    6  O   UNK     0      -1.859   1.091  -2.129  0.00  0.00           O+0
HETATM    7  C   UNK     0      -2.340   1.904  -3.213  0.00  0.00           C+0
HETATM    8  C   UNK     0      -2.260   3.361  -2.747  0.00  0.00           C+0
HETATM    9  O   UNK     0      -0.917   3.667  -2.358  0.00  0.00           O+0
HETATM   10  C   UNK     0      -3.772   1.507  -3.591  0.00  0.00           C+0
HETATM   11  O   UNK     0      -4.231   2.245  -4.724  0.00  0.00           O+0
HETATM   12  C   UNK     0      -3.825   0.010  -3.910  0.00  0.00           C+0
HETATM   13  O   UNK     0      -5.192  -0.372  -4.138  0.00  0.00           O+0
HETATM   14  C   UNK     0      -3.227  -0.809  -2.770  0.00  0.00           C+0
HETATM   15  O   UNK     0      -3.213  -2.195  -3.147  0.00  0.00           O+0
HETATM   16  C   UNK     0       1.743  -0.238   0.751  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.726   1.235   1.198  0.00  0.00           C+0
HETATM   18  O   UNK     0       1.734   2.046   0.027  0.00  0.00           O+0
HETATM   19  C   UNK     0       0.403   1.355   1.984  0.00  0.00           C+0
HETATM   20  C   UNK     0       0.610   0.756   3.405  0.00  0.00           C+0
HETATM   21  C   UNK     0      -0.578   0.842   4.359  0.00  0.00           C+0
HETATM   22  C   UNK     0      -1.326   2.169   4.286  0.00  0.00           C+0
HETATM   23  O   UNK     0      -2.570   2.038   4.971  0.00  0.00           O+0
HETATM   24  C   UNK     0      -1.551   2.683   2.841  0.00  0.00           C+0
HETATM   25  C   UNK     0      -2.169   4.096   2.906  0.00  0.00           C+0
HETATM   26  C   UNK     0      -2.523   1.773   2.023  0.00  0.00           C+0
HETATM   27  C   UNK     0      -1.957   0.417   1.566  0.00  0.00           C+0
HETATM   28  C   UNK     0      -0.546   0.595   1.024  0.00  0.00           C+0
HETATM   29  C   UNK     0      -0.171   2.771   2.142  0.00  0.00           C+0
HETATM   30  H   UNK     0       0.539  -2.761   0.795  0.00  0.00           H+0
HETATM   31  H   UNK     0       0.017  -1.907   2.246  0.00  0.00           H+0
HETATM   32  H   UNK     0      -1.142  -2.243   0.962  0.00  0.00           H+0
HETATM   33  H   UNK     0       0.633  -1.605  -1.438  0.00  0.00           H+0
HETATM   34  H   UNK     0       0.391   0.135  -1.567  0.00  0.00           H+0
HETATM   35  H   UNK     0      -1.140  -0.471  -3.309  0.00  0.00           H+0
HETATM   36  H   UNK     0      -1.658   1.781  -4.065  0.00  0.00           H+0
HETATM   37  H   UNK     0      -2.894   3.529  -1.870  0.00  0.00           H+0
HETATM   38  H   UNK     0      -2.555   4.057  -3.537  0.00  0.00           H+0
HETATM   39  H   UNK     0      -0.630   2.924  -1.790  0.00  0.00           H+0
HETATM   40  H   UNK     0      -4.459   1.723  -2.763  0.00  0.00           H+0
HETATM   41  H   UNK     0      -5.067   1.811  -4.992  0.00  0.00           H+0
HETATM   42  H   UNK     0      -3.301  -0.198  -4.852  0.00  0.00           H+0
HETATM   43  H   UNK     0      -5.182  -1.351  -4.154  0.00  0.00           H+0
HETATM   44  H   UNK     0      -3.868  -0.736  -1.882  0.00  0.00           H+0
HETATM   45  H   UNK     0      -2.721  -2.647  -2.433  0.00  0.00           H+0
HETATM   46  H   UNK     0       2.372  -0.380  -0.135  0.00  0.00           H+0
HETATM   47  H   UNK     0       2.162  -0.861   1.550  0.00  0.00           H+0
HETATM   48  H   UNK     0       2.613   1.484   1.790  0.00  0.00           H+0
HETATM   49  H   UNK     0       1.827   2.973   0.310  0.00  0.00           H+0
HETATM   50  H   UNK     0       1.436   1.308   3.876  0.00  0.00           H+0
HETATM   51  H   UNK     0       0.947  -0.283   3.369  0.00  0.00           H+0
HETATM   52  H   UNK     0      -0.219   0.695   5.387  0.00  0.00           H+0
HETATM   53  H   UNK     0      -1.262   0.002   4.210  0.00  0.00           H+0
HETATM   54  H   UNK     0      -0.741   2.919   4.835  0.00  0.00           H+0
HETATM   55  H   UNK     0      -2.378   1.751   5.880  0.00  0.00           H+0
HETATM   56  H   UNK     0      -2.285   4.523   1.903  0.00  0.00           H+0
HETATM   57  H   UNK     0      -1.535   4.779   3.482  0.00  0.00           H+0
HETATM   58  H   UNK     0      -3.158   4.080   3.375  0.00  0.00           H+0
HETATM   59  H   UNK     0      -2.816   2.317   1.114  0.00  0.00           H+0
HETATM   60  H   UNK     0      -3.454   1.604   2.577  0.00  0.00           H+0
HETATM   61  H   UNK     0      -1.996  -0.315   2.373  0.00  0.00           H+0
HETATM   62  H   UNK     0      -2.611   0.016   0.782  0.00  0.00           H+0
HETATM   63  H   UNK     0      -0.684   1.262   0.158  0.00  0.00           H+0
HETATM   64  H   UNK     0      -0.284   3.262   1.167  0.00  0.00           H+0
HETATM   65  H   UNK     0       0.520   3.397   2.722  0.00  0.00           H+0
CONECT    1    2   30   31   32                                             
CONECT    2   28   16    1    3                                             
CONECT    3    2    4   33   34                                             
CONECT    4    3    5                                                       
CONECT    5    6   14    4   35                                             
CONECT    6    7    5                                                       
CONECT    7   10    6    8   36                                             
CONECT    8    9    7   37   38                                             
CONECT    9    8   39                                                       
CONECT   10   12    7   11   40                                             
CONECT   11   10   41                                                       
CONECT   12   10   13   14   42                                             
CONECT   13   12   43                                                       
CONECT   14   15    5   12   44                                             
CONECT   15   14   45                                                       
CONECT   16    2   17   46   47                                             
CONECT   17   16   19   18   48                                             
CONECT   18   17   49                                                       
CONECT   19   17   28   20   29                                             
CONECT   20   19   21   50   51                                             
CONECT   21   20   22   52   53                                             
CONECT   22   21   24   23   54                                             
CONECT   23   22   55                                                       
CONECT   24   26   22   25   29                                             
CONECT   25   24   56   57   58                                             
CONECT   26   27   24   59   60                                             
CONECT   27   26   28   61   62                                             
CONECT   28    2   19   27   63                                             
CONECT   29   19   24   64   65                                             
CONECT   30    1                                                            
CONECT   31    1                                                            
CONECT   32    1                                                            
CONECT   33    3                                                            
CONECT   34    3                                                            
CONECT   35    5                                                            
CONECT   36    7                                                            
CONECT   37    8                                                            
CONECT   38    8                                                            
CONECT   39    9                                                            
CONECT   40   10                                                            
CONECT   41   11                                                            
CONECT   42   12                                                            
CONECT   43   13                                                            
CONECT   44   14                                                            
CONECT   45   15                                                            
CONECT   46   16                                                            
CONECT   47   16                                                            
CONECT   48   17                                                            
CONECT   49   18                                                            
CONECT   50   20                                                            
CONECT   51   20                                                            
CONECT   52   21                                                            
CONECT   53   21                                                            
CONECT   54   22                                                            
CONECT   55   23                                                            
CONECT   56   25                                                            
CONECT   57   25                                                            
CONECT   58   25                                                            
CONECT   59   26                                                            
CONECT   60   26                                                            
CONECT   61   27                                                            
CONECT   62   27                                                            
CONECT   63   28                                                            
CONECT   64   29                                                            
CONECT   65   29                                                            
MASTER        0    0    0    0    0    0    0    0   65    0  136    0
END

RDKit          3D

65 68  0  0  0  0  0  0  0  0999 V2000
   -0.1045   -1.9525    1.1609 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2546   -0.6236    0.4804 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0419   -0.7677   -1.0489 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.2305    2.2449   -4.7245 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8255    0.0100   -3.9105 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.1917   -0.3722   -4.1375 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2266   -0.8092   -2.7698 C   0  0  1  0  0  0  0  0  0  0  0  0
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   -2.8942    3.5288   -1.8698 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.6303    2.9237   -1.7903 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4589    1.7229   -2.7629 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0666    1.8112   -4.9924 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.7206   -2.6472   -2.4325 H   0  0  0  0  0  0  0  0  0  0  0  0
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    2.6126    1.4837    1.7899 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8267    2.9729    0.3103 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4363    1.3076    3.8759 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9473   -0.2828    3.3686 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.9962   -0.3149    2.3725 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.6839    1.2617    0.1583 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2842    3.2624    1.1668 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5196    3.3971    2.7217 H   0  0  0  0  0  0  0  0  0  0  0  0
 26 27  1  0
 12 10  1  0
 10  7  1  0
  7  6  1  0
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 28  2  1  0
  2 16  1  0
 16 17  1  0
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 26 24  1  0
 10 11  1  0
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  2  1  1  1
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  1 30  1  0
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 25 56  1  0
 25 57  1  0
 25 58  1  0
 23 55  1  0
M  END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₁H₃₆O₈

Average Mass

416.5110 Da

Monoisotopic Mass

416.24102 Da

IUPAC Name

(2R,3R,4S,5S,6R)-2-{[(1S,2R,4S,5R,8R,9S)-2,9-dihydroxy-4,8-dimethyltricyclo[6.3.1.0^{1,5}]dodecan-4-yl]methoxy}-6-(hydroxymethyl)oxane-3,4,5-triol

Traditional Name

(2R,3R,4S,5S,6R)-2-{[(1S,2R,4S,5R,8R,9S)-2,9-dihydroxy-4,8-dimethyltricyclo[6.3.1.0^{1,5}]dodecan-4-yl]methoxy}-6-(hydroxymethyl)oxane-3,4,5-triol

CAS Registry Number

Not Available

SMILES

[H]OC([H])([H])[C@@]1([H])O[C@@]([H])(OC([H])([H])[C@@]2(C([H])([H])[H])C([H])([H])[C@@]([H])(O[H])[C@]34C([H])([H])C([H])([H])[C@]([H])(O[H])[C@](C([H])([H])[H])(C([H])([H])C([H])([H])[C@]23[H])C4([H])[H])[C@]([H])(O[H])[C@@]([H])(O[H])[C@]1([H])O[H]

InChI Identifier

InChI=1S/C21H36O8/c1-19-5-3-12-20(2,7-14(24)21(12,9-19)6-4-13(19)23)10-28-18-17(27)16(26)15(25)11(8-22)29-18/h11-18,22-27H,3-10H2,1-2H3/t11-,12-,13+,14-,15-,16+,17-,18-,19-,20-,21+/m1/s1

InChI Key

DXUYVYPTPCNDOR-IMHCYBRXSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Salacia chinensis	JEOL database	Nakamura, S., et al, Chem. Pharm. Bull. 59, 1020 (2011)

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.77	ALOGPS
logP	-0.84	ChemAxon
logS	-1.9	ALOGPS
pKa (Strongest Acidic)	12.21	ChemAxon
pKa (Strongest Basic)	-0.86	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	139.84 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	102.04 m³·mol⁻¹	ChemAxon
Polarizability	43.52 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

Nakamura, S., et al. (2011). Nakamura, S., et al, Chem. Pharm. Bull. 59, 1020 (2011). Chem. Pharm. Bull..

Showing NP-Card for foliachinenoside F (NP0040688)

MOL for NP0040688 (foliachinenoside F)

3D MOL for NP0040688 (foliachinenoside F)

3D SDF for NP0040688 (foliachinenoside F)

3D-SDF for NP0040688 (foliachinenoside F)

PDB for NP0040688 (foliachinenoside F)

3D PDB for NP0040688 (foliachinenoside F)

SMILES for NP0040688 (foliachinenoside F)

INCHI for NP0040688 (foliachinenoside F)

Structure for NP0040688 (foliachinenoside F)

3D Structure for NP0040688 (foliachinenoside F)