NP-MRD: Showing NP-Card for rhizinachromone (NP0039906)

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Record Information

Version

2.0

Created at

2021-06-20 22:12:33 UTC

Updated at

2021-06-30 00:13:30 UTC

NP-MRD ID

NP0039906

Secondary Accession Numbers

None

Natural Product Identification

Common Name

rhizinachromone

Provided By

JEOL Database JEOL Logo

Description

rhizinachromone is found in Rhizina sp. BCC 12292. rhizinachromone was first documented in 2010 (Isaka, M., et al.).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306212100123D          

 39 41  0  0  0  0            999 V2000
   -4.3975    1.7951   -0.7465 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4660    0.7151   -0.6861 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4025    0.9417    0.1444 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2161    1.9943    0.7496 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4470   -0.2724    0.1692 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7596   -0.3570    1.5187 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5615   -0.4084    1.7810 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4531   -0.4787    0.7253 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6433    0.2715    0.9561 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1014   -0.4571    3.0598 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2706   -0.4190    4.1437 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8685   -0.4232    5.4055 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0743   -0.3951    6.5533 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3161   -0.3662    6.4385 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9069   -0.3642    5.1774 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2746   -0.3402    5.1396 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1106   -0.3879    4.0272 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6871   -0.3880    2.6811 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9077   -0.4210    2.5504 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1096   -1.5446   -0.0610 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5354   -2.0943   -1.1864 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6206   -1.3950   -1.8463 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1555   -1.6703   -3.0668 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5536   -0.1639   -1.0600 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1148    0.8009   -1.4087 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2167    1.4991   -1.4075 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8112    2.0024    0.2454 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9210    2.6877   -1.1637 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4102    1.3037    1.2393 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2632   -0.2078    1.7207 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2132    0.2936    0.0227 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9516   -0.4489    5.4970 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5368   -0.3972    7.5375 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9395   -0.3459    7.3289 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5532   -0.3509    4.1961 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9173   -3.0731   -1.4345 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2284   -1.6543   -2.8512 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0537   -0.9191   -3.8348 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0907   -2.6533   -3.4809 H   0  0  0  0  0  0  0  0  0  0  0  0
 17 11  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 24  1  0  0  0  0
 24  5  1  0  0  0  0
  2  1  1  0  0  0  0
 17 18  1  0  0  0  0
 11 10  1  0  0  0  0
 10  7  1  0  0  0  0
  7  6  2  0  0  0  0
  6 18  1  0  0  0  0
 14 13  1  0  0  0  0
 15 16  1  0  0  0  0
  5 20  1  0  0  0  0
 18 19  2  0  0  0  0
  6  5  1  0  0  0  0
 13 12  2  0  0  0  0
  7  8  1  0  0  0  0
 12 11  1  0  0  0  0
  8  9  1  0  0  0  0
  5  3  1  0  0  0  0
  3  2  1  0  0  0  0
  3  4  2  0  0  0  0
 17 15  1  0  0  0  0
 24 25  2  0  0  0  0
 15 14  2  0  0  0  0
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 16 35  1  0  0  0  0
  9 29  1  0  0  0  0
  9 30  1  0  0  0  0
  9 31  1  0  0  0  0
 23 37  1  0  0  0  0
 23 38  1  0  0  0  0
 23 39  1  0  0  0  0
M  END

     RDKit          3D

 39 41  0  0  0  0  0  0  0  0999 V2000
   -4.3975    1.7951   -0.7465 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4660    0.7151   -0.6861 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4025    0.9417    0.1444 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2161    1.9943    0.7496 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4470   -0.2724    0.1692 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7596   -0.3570    1.5187 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5615   -0.4084    1.7810 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4531   -0.4787    0.7253 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6433    0.2715    0.9561 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1014   -0.4571    3.0598 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2706   -0.4190    4.1437 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8685   -0.4232    5.4055 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0743   -0.3951    6.5533 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3161   -0.3662    6.4385 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9069   -0.3642    5.1774 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2746   -0.3402    5.1396 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1106   -0.3879    4.0272 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6871   -0.3880    2.6811 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9077   -0.4210    2.5504 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1096   -1.5446   -0.0610 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5354   -2.0943   -1.1864 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6206   -1.3950   -1.8463 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1555   -1.6703   -3.0668 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5536   -0.1639   -1.0600 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1148    0.8009   -1.4087 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2167    1.4991   -1.4075 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8112    2.0024    0.2454 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9210    2.6877   -1.1637 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4102    1.3037    1.2393 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2632   -0.2078    1.7207 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2132    0.2936    0.0227 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9516   -0.4489    5.4970 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5368   -0.3972    7.5375 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9395   -0.3459    7.3289 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5532   -0.3509    4.1961 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9173   -3.0731   -1.4345 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2284   -1.6543   -2.8512 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0537   -0.9191   -3.8348 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0907   -2.6533   -3.4809 H   0  0  0  0  0  0  0  0  0  0  0  0
 17 11  2  0
 20 21  1  0
 21 22  2  0
 22 24  1  0
 24  5  1  0
  2  1  1  0
 17 18  1  0
 11 10  1  0
 10  7  1  0
  7  6  2  0
  6 18  1  0
 14 13  1  0
 15 16  1  0
  5 20  1  0
 18 19  2  0
  6  5  1  0
 13 12  2  0
  7  8  1  0
 12 11  1  0
  8  9  1  0
  5  3  1  0
  3  2  1  0
  3  4  2  0
 17 15  1  0
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 15 14  2  0
 22 23  1  0
  1 26  1  0
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 21 36  1  0
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 16 35  1  0
  9 29  1  0
  9 30  1  0
  9 31  1  0
 23 37  1  0
 23 38  1  0
 23 39  1  0
M  END


  Mrv1652306212100123D          

 39 41  0  0  0  0            999 V2000
   -4.3975    1.7951   -0.7465 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4660    0.7151   -0.6861 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4025    0.9417    0.1444 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2161    1.9943    0.7496 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4470   -0.2724    0.1692 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7596   -0.3570    1.5187 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5615   -0.4084    1.7810 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4531   -0.4787    0.7253 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6433    0.2715    0.9561 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1014   -0.4571    3.0598 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2706   -0.4190    4.1437 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8685   -0.4232    5.4055 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0743   -0.3951    6.5533 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3161   -0.3662    6.4385 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9069   -0.3642    5.1774 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2746   -0.3402    5.1396 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1106   -0.3879    4.0272 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6871   -0.3880    2.6811 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9077   -0.4210    2.5504 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1096   -1.5446   -0.0610 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5354   -2.0943   -1.1864 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6206   -1.3950   -1.8463 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1555   -1.6703   -3.0668 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5536   -0.1639   -1.0600 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1148    0.8009   -1.4087 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2167    1.4991   -1.4075 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8112    2.0024    0.2454 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9210    2.6877   -1.1637 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4102    1.3037    1.2393 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2632   -0.2078    1.7207 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2132    0.2936    0.0227 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9516   -0.4489    5.4970 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5368   -0.3972    7.5375 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9395   -0.3459    7.3289 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5532   -0.3509    4.1961 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9173   -3.0731   -1.4345 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2284   -1.6543   -2.8512 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0537   -0.9191   -3.8348 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0907   -2.6533   -3.4809 H   0  0  0  0  0  0  0  0  0  0  0  0
 17 11  2  0  0  0  0
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 21 22  2  0  0  0  0
 22 24  1  0  0  0  0
 24  5  1  0  0  0  0
  2  1  1  0  0  0  0
 17 18  1  0  0  0  0
 11 10  1  0  0  0  0
 10  7  1  0  0  0  0
  7  6  2  0  0  0  0
  6 18  1  0  0  0  0
 14 13  1  0  0  0  0
 15 16  1  0  0  0  0
  5 20  1  0  0  0  0
 18 19  2  0  0  0  0
  6  5  1  0  0  0  0
 13 12  2  0  0  0  0
  7  8  1  0  0  0  0
 12 11  1  0  0  0  0
  8  9  1  0  0  0  0
  5  3  1  0  0  0  0
  3  2  1  0  0  0  0
  3  4  2  0  0  0  0
 17 15  1  0  0  0  0
 24 25  2  0  0  0  0
 15 14  2  0  0  0  0
 22 23  1  0  0  0  0
  1 26  1  0  0  0  0
  1 27  1  0  0  0  0
  1 28  1  0  0  0  0
 21 36  1  0  0  0  0
 14 34  1  0  0  0  0
 13 33  1  0  0  0  0
 12 32  1  0  0  0  0
 16 35  1  0  0  0  0
  9 29  1  0  0  0  0
  9 30  1  0  0  0  0
  9 31  1  0  0  0  0
 23 37  1  0  0  0  0
 23 38  1  0  0  0  0
 23 39  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0039906

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C([H])C([H])=C([H])C2=C1C(=O)C(=C(OC([H])([H])[H])O2)[C@@]1(OC([H])=C(C1=O)C([H])([H])[H])C(=O)OC([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C17H14O8/c1-8-7-24-17(14(8)20,16(21)23-3)12-13(19)11-9(18)5-4-6-10(11)25-15(12)22-2/h4-7,18H,1-3H3/t17-/m0/s1

> <INCHI_KEY>
YASMNKRZQYEBRV-KRWDZBQOSA-N

> <FORMULA>
C17H14O8

> <MOLECULAR_WEIGHT>
346.291

> <EXACT_MASS>
346.068867411

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
39

> <JCHEM_AVERAGE_POLARIZABILITY>
32.88100442459134

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
methyl (2S)-2-(5-hydroxy-2-methoxy-4-oxo-4H-chromen-3-yl)-4-methyl-3-oxo-2,3-dihydrofuran-2-carboxylate

> <ALOGPS_LOGP>
1.82

> <JCHEM_LOGP>
2.59611786

> <ALOGPS_LOGS>
-3.16

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.296712078538856

> <JCHEM_PKA_STRONGEST_BASIC>
-4.627270127775436

> <JCHEM_POLAR_SURFACE_AREA>
108.36000000000001

> <JCHEM_REFRACTIVITY>
93.2525

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.38e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
methyl (2S)-2-(5-hydroxy-2-methoxy-4-oxochromen-3-yl)-4-methyl-3-oxofuran-2-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 39 41  0  0  0  0  0  0  0  0999 V2000
   -4.3975    1.7951   -0.7465 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4660    0.7151   -0.6861 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4025    0.9417    0.1444 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2161    1.9943    0.7496 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4470   -0.2724    0.1692 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7596   -0.3570    1.5187 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5615   -0.4084    1.7810 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4531   -0.4787    0.7253 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6433    0.2715    0.9561 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1014   -0.4571    3.0598 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2706   -0.4190    4.1437 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8685   -0.4232    5.4055 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0743   -0.3951    6.5533 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3161   -0.3662    6.4385 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9069   -0.3642    5.1774 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2746   -0.3402    5.1396 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1106   -0.3879    4.0272 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.9210    2.6877   -1.1637 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4102    1.3037    1.2393 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2632   -0.2078    1.7207 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2132    0.2936    0.0227 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.9395   -0.3459    7.3289 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5532   -0.3509    4.1961 H   0  0  0  0  0  0  0  0  0  0  0  0
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 23 39  1  0
M  END

HEADER    PROTEIN                                 21-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   21-JUN-21         0                                  
HETATM    1  C   UNK     0      -4.397   1.795  -0.747  0.00  0.00           C+0
HETATM    2  O   UNK     0      -3.466   0.715  -0.686  0.00  0.00           O+0
HETATM    3  C   UNK     0      -2.402   0.942   0.144  0.00  0.00           C+0
HETATM    4  O   UNK     0      -2.216   1.994   0.750  0.00  0.00           O+0
HETATM    5  C   UNK     0      -1.447  -0.272   0.169  0.00  0.00           C+0
HETATM    6  C   UNK     0      -0.760  -0.357   1.519  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.562  -0.408   1.781  0.00  0.00           C+0
HETATM    8  O   UNK     0       1.453  -0.479   0.725  0.00  0.00           O+0
HETATM    9  C   UNK     0       2.643   0.272   0.956  0.00  0.00           C+0
HETATM   10  O   UNK     0       1.101  -0.457   3.060  0.00  0.00           O+0
HETATM   11  C   UNK     0       0.271  -0.419   4.144  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.869  -0.423   5.406  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.074  -0.395   6.553  0.00  0.00           C+0
HETATM   14  C   UNK     0      -1.316  -0.366   6.439  0.00  0.00           C+0
HETATM   15  C   UNK     0      -1.907  -0.364   5.177  0.00  0.00           C+0
HETATM   16  O   UNK     0      -3.275  -0.340   5.140  0.00  0.00           O+0
HETATM   17  C   UNK     0      -1.111  -0.388   4.027  0.00  0.00           C+0
HETATM   18  C   UNK     0      -1.687  -0.388   2.681  0.00  0.00           C+0
HETATM   19  O   UNK     0      -2.908  -0.421   2.550  0.00  0.00           O+0
HETATM   20  O   UNK     0      -2.110  -1.545  -0.061  0.00  0.00           O+0
HETATM   21  C   UNK     0      -1.535  -2.094  -1.186  0.00  0.00           C+0
HETATM   22  C   UNK     0      -0.621  -1.395  -1.846  0.00  0.00           C+0
HETATM   23  C   UNK     0       0.156  -1.670  -3.067  0.00  0.00           C+0
HETATM   24  C   UNK     0      -0.554  -0.164  -1.060  0.00  0.00           C+0
HETATM   25  O   UNK     0       0.115   0.801  -1.409  0.00  0.00           O+0
HETATM   26  H   UNK     0      -5.217   1.499  -1.408  0.00  0.00           H+0
HETATM   27  H   UNK     0      -4.811   2.002   0.245  0.00  0.00           H+0
HETATM   28  H   UNK     0      -3.921   2.688  -1.164  0.00  0.00           H+0
HETATM   29  H   UNK     0       2.410   1.304   1.239  0.00  0.00           H+0
HETATM   30  H   UNK     0       3.263  -0.208   1.721  0.00  0.00           H+0
HETATM   31  H   UNK     0       3.213   0.294   0.023  0.00  0.00           H+0
HETATM   32  H   UNK     0       1.952  -0.449   5.497  0.00  0.00           H+0
HETATM   33  H   UNK     0       0.537  -0.397   7.537  0.00  0.00           H+0
HETATM   34  H   UNK     0      -1.940  -0.346   7.329  0.00  0.00           H+0
HETATM   35  H   UNK     0      -3.553  -0.351   4.196  0.00  0.00           H+0
HETATM   36  H   UNK     0      -1.917  -3.073  -1.435  0.00  0.00           H+0
HETATM   37  H   UNK     0       1.228  -1.654  -2.851  0.00  0.00           H+0
HETATM   38  H   UNK     0      -0.054  -0.919  -3.835  0.00  0.00           H+0
HETATM   39  H   UNK     0      -0.091  -2.653  -3.481  0.00  0.00           H+0
CONECT    1    2   26   27   28                                             
CONECT    2    1    3                                                       
CONECT    3    5    2    4                                                  
CONECT    4    3                                                            
CONECT    5   24   20    6    3                                             
CONECT    6    7   18    5                                                  
CONECT    7   10    6    8                                                  
CONECT    8    7    9                                                       
CONECT    9    8   29   30   31                                             
CONECT   10   11    7                                                       
CONECT   11   17   10   12                                                  
CONECT   12   13   11   32                                                  
CONECT   13   14   12   33                                                  
CONECT   14   13   15   34                                                  
CONECT   15   16   17   14                                                  
CONECT   16   15   35                                                       
CONECT   17   11   18   15                                                  
CONECT   18   17    6   19                                                  
CONECT   19   18                                                            
CONECT   20   21    5                                                       
CONECT   21   20   22   36                                                  
CONECT   22   21   24   23                                                  
CONECT   23   22   37   38   39                                             
CONECT   24   22    5   25                                                  
CONECT   25   24                                                            
CONECT   26    1                                                            
CONECT   27    1                                                            
CONECT   28    1                                                            
CONECT   29    9                                                            
CONECT   30    9                                                            
CONECT   31    9                                                            
CONECT   32   12                                                            
CONECT   33   13                                                            
CONECT   34   14                                                            
CONECT   35   16                                                            
CONECT   36   21                                                            
CONECT   37   23                                                            
CONECT   38   23                                                            
CONECT   39   23                                                            
MASTER        0    0    0    0    0    0    0    0   39    0   82    0
END

RDKit          3D

39 41  0  0  0  0  0  0  0  0999 V2000
   -4.3975    1.7951   -0.7465 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4660    0.7151   -0.6861 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4025    0.9417    0.1444 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2161    1.9943    0.7496 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4470   -0.2724    0.1692 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7596   -0.3570    1.5187 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5615   -0.4084    1.7810 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4531   -0.4787    0.7253 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6433    0.2715    0.9561 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1014   -0.4571    3.0598 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2706   -0.4190    4.1437 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8685   -0.4232    5.4055 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0743   -0.3951    6.5533 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3161   -0.3662    6.4385 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9069   -0.3642    5.1774 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2746   -0.3402    5.1396 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1106   -0.3879    4.0272 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6871   -0.3880    2.6811 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9077   -0.4210    2.5504 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1096   -1.5446   -0.0610 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5354   -2.0943   -1.1864 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6206   -1.3950   -1.8463 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1555   -1.6703   -3.0668 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5536   -0.1639   -1.0600 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1148    0.8009   -1.4087 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2167    1.4991   -1.4075 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8112    2.0024    0.2454 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9210    2.6877   -1.1637 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4102    1.3037    1.2393 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2632   -0.2078    1.7207 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2132    0.2936    0.0227 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9516   -0.4489    5.4970 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5368   -0.3972    7.5375 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9395   -0.3459    7.3289 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5532   -0.3509    4.1961 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9173   -3.0731   -1.4345 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2284   -1.6543   -2.8512 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0537   -0.9191   -3.8348 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0907   -2.6533   -3.4809 H   0  0  0  0  0  0  0  0  0  0  0  0
 17 11  2  0
 20 21  1  0
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 22 24  1  0
 24  5  1  0
  2  1  1  0
 17 18  1  0
 11 10  1  0
 10  7  1  0
  7  6  2  0
  6 18  1  0
 14 13  1  0
 15 16  1  0
  5 20  1  0
 18 19  2  0
  6  5  1  0
 13 12  2  0
  7  8  1  0
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  3  2  1  0
  3  4  2  0
 17 15  1  0
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 15 14  2  0
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  1 26  1  0
  1 27  1  0
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 21 36  1  0
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  9 29  1  0
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  9 31  1  0
 23 37  1  0
 23 38  1  0
 23 39  1  0
M  END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₇H₁₄O₈

Average Mass

346.2910 Da

Monoisotopic Mass

346.06887 Da

IUPAC Name

methyl (2S)-2-(5-hydroxy-2-methoxy-4-oxo-4H-chromen-3-yl)-4-methyl-3-oxo-2,3-dihydrofuran-2-carboxylate

Traditional Name

methyl (2S)-2-(5-hydroxy-2-methoxy-4-oxochromen-3-yl)-4-methyl-3-oxofuran-2-carboxylate

CAS Registry Number

Not Available

SMILES

[H]OC1=C([H])C([H])=C([H])C2=C1C(=O)C(=C(OC([H])([H])[H])O2)[C@@]1(OC([H])=C(C1=O)C([H])([H])[H])C(=O)OC([H])([H])[H]

InChI Identifier

InChI=1S/C17H14O8/c1-8-7-24-17(14(8)20,16(21)23-3)12-13(19)11-9(18)5-4-6-10(11)25-15(12)22-2/h4-7,18H,1-3H3/t17-/m0/s1

InChI Key

YASMNKRZQYEBRV-KRWDZBQOSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Rhizina sp. BCC 12292	JEOL database	Isaka, M., et al, Phytochem. Lett. 3, 152 (2010)

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.82	ALOGPS
logP	2.6	ChemAxon
logS	-3.2	ALOGPS
pKa (Strongest Acidic)	7.3	ChemAxon
pKa (Strongest Basic)	-4.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	108.36 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	93.25 m³·mol⁻¹	ChemAxon
Polarizability	32.88 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

Isaka, M., et al. (2010). Isaka, M., et al, Phytochem. Lett. 3, 152 (2010). Phytochem..

Showing NP-Card for rhizinachromone (NP0039906)

MOL for NP0039906 (rhizinachromone)

3D MOL for NP0039906 (rhizinachromone)

3D SDF for NP0039906 (rhizinachromone)

3D-SDF for NP0039906 (rhizinachromone)

PDB for NP0039906 (rhizinachromone)

3D PDB for NP0039906 (rhizinachromone)

SMILES for NP0039906 (rhizinachromone)

INCHI for NP0039906 (rhizinachromone)

Structure for NP0039906 (rhizinachromone)

3D Structure for NP0039906 (rhizinachromone)