NP-MRD: Showing NP-Card for phomactin I (NP0039188)

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Record Information

Version

2.0

Created at

2021-06-20 21:41:13 UTC

Updated at

2021-06-30 00:12:23 UTC

NP-MRD ID

NP0039188

Secondary Accession Numbers

None

Natural Product Identification

Common Name

phomactin I

Provided By

JEOL Database JEOL Logo

Description

phomactin I is found in Ishige okamurae. phomactin I was first documented in 2010 (Ishino, M., et al.).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306202123413D          

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M  END

     RDKit          3D

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M  END


  Mrv1652306202123413D          

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   -2.0066   -1.0785    3.3379 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6941    0.0365    2.0321 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6714   -1.4234    4.2554 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0441   -1.8839    4.7737 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7702   -2.6348    3.3390 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5017    0.9359    3.8070 H   0  0  0  0  0  0  0  0  0  0  0  0
 18 17  1  0  0  0  0
  4  5  1  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
  2  1  2  3  0  0  0
 12 13  1  0  0  0  0
  7  9  1  0  0  0  0
 13 16  1  0  0  0  0
 16 17  1  0  0  0  0
  3 23  1  0  0  0  0
 13 15  1  0  0  0  0
 16 15  1  0  0  0  0
  7  5  1  0  0  0  0
 13 14  1  6  0  0  0
 23 22  1  0  0  0  0
 19 20  1  1  0  0  0
  9  2  1  0  0  0  0
 22 21  1  0  0  0  0
 19 21  1  0  0  0  0
 22 19  1  0  0  0  0
  9 10  1  6  0  0  0
  2  3  1  0  0  0  0
  7  8  1  0  0  0  0
 19 18  1  0  0  0  0
  5  6  1  0  0  0  0
  3  4  2  0  0  0  0
 23 24  2  0  0  0  0
  7 30  1  6  0  0  0
  4 27  1  0  0  0  0
  5 28  1  1  0  0  0
  1 25  1  0  0  0  0
  1 26  1  0  0  0  0
 22 52  1  1  0  0  0
 18 47  1  0  0  0  0
 18 48  1  0  0  0  0
 17 45  1  0  0  0  0
 17 46  1  0  0  0  0
 11 37  1  0  0  0  0
 11 38  1  0  0  0  0
 12 39  1  0  0  0  0
 12 40  1  0  0  0  0
 16 44  1  6  0  0  0
 14 41  1  0  0  0  0
 14 42  1  0  0  0  0
 14 43  1  0  0  0  0
 20 49  1  0  0  0  0
 20 50  1  0  0  0  0
 20 51  1  0  0  0  0
 10 34  1  0  0  0  0
 10 35  1  0  0  0  0
 10 36  1  0  0  0  0
  8 31  1  0  0  0  0
  8 32  1  0  0  0  0
  8 33  1  0  0  0  0
  6 29  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0039188

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@@]1([H])C([H])=C2C(=C([H])[H])[C@@](C([H])([H])[H])(C([H])([H])C([H])([H])[C@@]3(O[C@]3([H])C([H])([H])C([H])([H])[C@]3(O[C@@]3([H])C2=O)C([H])([H])[H])C([H])([H])[H])[C@]1([H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C20H28O4/c1-11-13-10-14(21)12(2)18(11,3)8-9-19(4)15(23-19)6-7-20(5)17(24-20)16(13)22/h10,12,14-15,17,21H,1,6-9H2,2-5H3/t12-,14+,15-,17+,18-,19+,20-/m1/s1

> <INCHI_KEY>
VFVFKTQEVKMQJC-NUBFLLSLSA-N

> <FORMULA>
C20H28O4

> <MOLECULAR_WEIGHT>
332.44

> <EXACT_MASS>
332.198759382

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
52

> <JCHEM_AVERAGE_POLARIZABILITY>
36.22999301040216

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3R,5R,8R,10S,13S,14S,15S)-15-hydroxy-5,10,13,14-tetramethyl-17-methylidene-4,9-dioxatetracyclo[11.3.1.0^{3,5}.0^{8,10}]heptadec-1(16)-en-2-one

> <ALOGPS_LOGP>
2.71

> <JCHEM_LOGP>
2.667393076666667

> <ALOGPS_LOGS>
-3.62

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
19.772316980388464

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.48806223599047

> <JCHEM_PKA_STRONGEST_BASIC>
-3.0227202571803993

> <JCHEM_POLAR_SURFACE_AREA>
62.36

> <JCHEM_REFRACTIVITY>
91.58039999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
8.05e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3R,5R,8R,10S,13S,14S,15S)-15-hydroxy-5,10,13,14-tetramethyl-17-methylidene-4,9-dioxatetracyclo[11.3.1.0^{3,5}.0^{8,10}]heptadec-1(16)-en-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 52 55  0  0  0  0  0  0  0  0999 V2000
    1.6719    2.1471    0.3594 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3388    2.3313    0.3396 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4108    2.6061    1.5700 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4630    3.4519    1.5290 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9659    4.1467    0.2987 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.3155    3.7422    0.0694 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1470    3.8665   -0.9858 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1200    5.0017   -1.1726 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5023    2.4215   -0.9627 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3304    2.2203   -2.2571 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6486    1.3402   -0.9863 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1950   -0.1276   -0.9658 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3488   -1.0910   -0.7573 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.1416   -1.4561   -1.9764 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1763   -0.7992    0.3821 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4205   -2.0055    0.4730 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.3460   -2.0535    1.5195 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3217   -0.8745    2.5061 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0696   -0.6239    3.0458 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.6736   -1.6986    3.8976 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9447   -0.1244    2.0255 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6918    0.7786    3.1033 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1622    1.9814    2.9247 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6591    2.4610    3.9433 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2543    1.9785   -0.5392 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2485    2.1665    1.2789 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0253    3.6611    2.4373 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0060    5.2236    0.4981 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7815    3.7429    0.9221 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8262    3.9178   -1.8490 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3838    4.9348   -2.1408 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6215    5.9762   -1.1565 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6397    5.0091   -0.3854 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1549    2.9345   -2.3451 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7819    1.2237   -2.3030 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2997    2.3378   -3.1463 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2692    1.5006   -1.8784 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3236    1.4865   -0.1388 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7090   -0.3813   -1.9147 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4345   -0.2678   -0.1975 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9810   -2.1165   -1.7337 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5495   -0.5611   -2.4565 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5054   -1.9758   -2.6998 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9458   -2.9480    0.3776 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3807   -2.1680    1.0123 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4731   -2.9769    2.0995 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0066   -1.0785    3.3379 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6941    0.0365    2.0321 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6714   -1.4234    4.2554 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0441   -1.8839    4.7737 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7702   -2.6348    3.3390 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5017    0.9359    3.8070 H   0  0  0  0  0  0  0  0  0  0  0  0
 18 17  1  0
  4  5  1  0
  9 11  1  0
 11 12  1  0
  2  1  2  3
 12 13  1  0
  7  9  1  0
 13 16  1  0
 16 17  1  0
  3 23  1  0
 13 15  1  0
 16 15  1  0
  7  5  1  0
 13 14  1  6
 23 22  1  0
 19 20  1  1
  9  2  1  0
 22 21  1  0
 19 21  1  0
 22 19  1  0
  9 10  1  6
  2  3  1  0
  7  8  1  0
 19 18  1  0
  5  6  1  0
  3  4  2  0
 23 24  2  0
  7 30  1  6
  4 27  1  0
  5 28  1  1
  1 25  1  0
  1 26  1  0
 22 52  1  1
 18 47  1  0
 18 48  1  0
 17 45  1  0
 17 46  1  0
 11 37  1  0
 11 38  1  0
 12 39  1  0
 12 40  1  0
 16 44  1  6
 14 41  1  0
 14 42  1  0
 14 43  1  0
 20 49  1  0
 20 50  1  0
 20 51  1  0
 10 34  1  0
 10 35  1  0
 10 36  1  0
  8 31  1  0
  8 32  1  0
  8 33  1  0
  6 29  1  0
M  END

HEADER    PROTEIN                                 20-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-JUN-21         0                                  
HETATM    1  C   UNK     0       1.672   2.147   0.359  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.339   2.331   0.340  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.411   2.606   1.570  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.463   3.452   1.529  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.966   4.147   0.299  0.00  0.00           C+0
HETATM    6  O   UNK     0      -3.316   3.742   0.069  0.00  0.00           O+0
HETATM    7  C   UNK     0      -1.147   3.866  -0.986  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.120   5.002  -1.173  0.00  0.00           C+0
HETATM    9  C   UNK     0      -0.502   2.422  -0.963  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.330   2.220  -2.257  0.00  0.00           C+0
HETATM   11  C   UNK     0      -1.649   1.340  -0.986  0.00  0.00           C+0
HETATM   12  C   UNK     0      -1.195  -0.128  -0.966  0.00  0.00           C+0
HETATM   13  C   UNK     0      -2.349  -1.091  -0.757  0.00  0.00           C+0
HETATM   14  C   UNK     0      -3.142  -1.456  -1.976  0.00  0.00           C+0
HETATM   15  O   UNK     0      -3.176  -0.799   0.382  0.00  0.00           O+0
HETATM   16  C   UNK     0      -2.421  -2.006   0.473  0.00  0.00           C+0
HETATM   17  C   UNK     0      -1.346  -2.054   1.520  0.00  0.00           C+0
HETATM   18  C   UNK     0      -1.322  -0.875   2.506  0.00  0.00           C+0
HETATM   19  C   UNK     0       0.070  -0.624   3.046  0.00  0.00           C+0
HETATM   20  C   UNK     0       0.674  -1.699   3.898  0.00  0.00           C+0
HETATM   21  O   UNK     0       0.945  -0.124   2.026  0.00  0.00           O+0
HETATM   22  C   UNK     0       0.692   0.779   3.103  0.00  0.00           C+0
HETATM   23  C   UNK     0      -0.162   1.981   2.925  0.00  0.00           C+0
HETATM   24  O   UNK     0      -0.659   2.461   3.943  0.00  0.00           O+0
HETATM   25  H   UNK     0       2.254   1.978  -0.539  0.00  0.00           H+0
HETATM   26  H   UNK     0       2.248   2.167   1.279  0.00  0.00           H+0
HETATM   27  H   UNK     0      -2.025   3.661   2.437  0.00  0.00           H+0
HETATM   28  H   UNK     0      -2.006   5.224   0.498  0.00  0.00           H+0
HETATM   29  H   UNK     0      -3.781   3.743   0.922  0.00  0.00           H+0
HETATM   30  H   UNK     0      -1.826   3.918  -1.849  0.00  0.00           H+0
HETATM   31  H   UNK     0       0.384   4.935  -2.141  0.00  0.00           H+0
HETATM   32  H   UNK     0      -0.622   5.976  -1.157  0.00  0.00           H+0
HETATM   33  H   UNK     0       0.640   5.009  -0.385  0.00  0.00           H+0
HETATM   34  H   UNK     0       1.155   2.934  -2.345  0.00  0.00           H+0
HETATM   35  H   UNK     0       0.782   1.224  -2.303  0.00  0.00           H+0
HETATM   36  H   UNK     0      -0.300   2.338  -3.146  0.00  0.00           H+0
HETATM   37  H   UNK     0      -2.269   1.501  -1.878  0.00  0.00           H+0
HETATM   38  H   UNK     0      -2.324   1.486  -0.139  0.00  0.00           H+0
HETATM   39  H   UNK     0      -0.709  -0.381  -1.915  0.00  0.00           H+0
HETATM   40  H   UNK     0      -0.435  -0.268  -0.198  0.00  0.00           H+0
HETATM   41  H   UNK     0      -3.981  -2.116  -1.734  0.00  0.00           H+0
HETATM   42  H   UNK     0      -3.550  -0.561  -2.457  0.00  0.00           H+0
HETATM   43  H   UNK     0      -2.505  -1.976  -2.700  0.00  0.00           H+0
HETATM   44  H   UNK     0      -2.946  -2.948   0.378  0.00  0.00           H+0
HETATM   45  H   UNK     0      -0.381  -2.168   1.012  0.00  0.00           H+0
HETATM   46  H   UNK     0      -1.473  -2.977   2.099  0.00  0.00           H+0
HETATM   47  H   UNK     0      -2.007  -1.079   3.338  0.00  0.00           H+0
HETATM   48  H   UNK     0      -1.694   0.037   2.032  0.00  0.00           H+0
HETATM   49  H   UNK     0       1.671  -1.423   4.255  0.00  0.00           H+0
HETATM   50  H   UNK     0       0.044  -1.884   4.774  0.00  0.00           H+0
HETATM   51  H   UNK     0       0.770  -2.635   3.339  0.00  0.00           H+0
HETATM   52  H   UNK     0       1.502   0.936   3.807  0.00  0.00           H+0
CONECT    1    2   25   26                                                  
CONECT    2    1    9    3                                                  
CONECT    3   23    2    4                                                  
CONECT    4    5    3   27                                                  
CONECT    5    4    7    6   28                                             
CONECT    6    5   29                                                       
CONECT    7    9    5    8   30                                             
CONECT    8    7   31   32   33                                             
CONECT    9   11    7    2   10                                             
CONECT   10    9   34   35   36                                             
CONECT   11    9   12   37   38                                             
CONECT   12   11   13   39   40                                             
CONECT   13   12   16   15   14                                             
CONECT   14   13   41   42   43                                             
CONECT   15   13   16                                                       
CONECT   16   13   17   15   44                                             
CONECT   17   18   16   45   46                                             
CONECT   18   17   19   47   48                                             
CONECT   19   20   21   22   18                                             
CONECT   20   19   49   50   51                                             
CONECT   21   22   19                                                       
CONECT   22   23   21   19   52                                             
CONECT   23    3   22   24                                                  
CONECT   24   23                                                            
CONECT   25    1                                                            
CONECT   26    1                                                            
CONECT   27    4                                                            
CONECT   28    5                                                            
CONECT   29    6                                                            
CONECT   30    7                                                            
CONECT   31    8                                                            
CONECT   32    8                                                            
CONECT   33    8                                                            
CONECT   34   10                                                            
CONECT   35   10                                                            
CONECT   36   10                                                            
CONECT   37   11                                                            
CONECT   38   11                                                            
CONECT   39   12                                                            
CONECT   40   12                                                            
CONECT   41   14                                                            
CONECT   42   14                                                            
CONECT   43   14                                                            
CONECT   44   16                                                            
CONECT   45   17                                                            
CONECT   46   17                                                            
CONECT   47   18                                                            
CONECT   48   18                                                            
CONECT   49   20                                                            
CONECT   50   20                                                            
CONECT   51   20                                                            
CONECT   52   22                                                            
MASTER        0    0    0    0    0    0    0    0   52    0  110    0
END

RDKit          3D

52 55  0  0  0  0  0  0  0  0999 V2000
    1.6719    2.1471    0.3594 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3388    2.3313    0.3396 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4108    2.6061    1.5700 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4630    3.4519    1.5290 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9659    4.1467    0.2987 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.3155    3.7422    0.0694 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1470    3.8665   -0.9858 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1200    5.0017   -1.1726 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5023    2.4215   -0.9627 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3304    2.2203   -2.2571 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6486    1.3402   -0.9863 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1950   -0.1276   -0.9658 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3488   -1.0910   -0.7573 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.1416   -1.4561   -1.9764 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1763   -0.7992    0.3821 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4205   -2.0055    0.4730 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.3460   -2.0535    1.5195 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3217   -0.8745    2.5061 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0696   -0.6239    3.0458 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.6736   -1.6986    3.8976 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9447   -0.1244    2.0255 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6918    0.7786    3.1033 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1622    1.9814    2.9247 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6591    2.4610    3.9433 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2543    1.9785   -0.5392 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2485    2.1665    1.2789 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0253    3.6611    2.4373 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0060    5.2236    0.4981 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7815    3.7429    0.9221 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8262    3.9178   -1.8490 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3838    4.9348   -2.1408 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6215    5.9762   -1.1565 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6397    5.0091   -0.3854 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1549    2.9345   -2.3451 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7819    1.2237   -2.3030 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2997    2.3378   -3.1463 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2692    1.5006   -1.8784 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3236    1.4865   -0.1388 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7090   -0.3813   -1.9147 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4345   -0.2678   -0.1975 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9810   -2.1165   -1.7337 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5495   -0.5611   -2.4565 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5054   -1.9758   -2.6998 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9458   -2.9480    0.3776 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3807   -2.1680    1.0123 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4731   -2.9769    2.0995 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0066   -1.0785    3.3379 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6941    0.0365    2.0321 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6714   -1.4234    4.2554 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0441   -1.8839    4.7737 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7702   -2.6348    3.3390 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5017    0.9359    3.8070 H   0  0  0  0  0  0  0  0  0  0  0  0
 18 17  1  0
  4  5  1  0
  9 11  1  0
 11 12  1  0
  2  1  2  3
 12 13  1  0
  7  9  1  0
 13 16  1  0
 16 17  1  0
  3 23  1  0
 13 15  1  0
 16 15  1  0
  7  5  1  0
 13 14  1  6
 23 22  1  0
 19 20  1  1
  9  2  1  0
 22 21  1  0
 19 21  1  0
 22 19  1  0
  9 10  1  6
  2  3  1  0
  7  8  1  0
 19 18  1  0
  5  6  1  0
  3  4  2  0
 23 24  2  0
  7 30  1  6
  4 27  1  0
  5 28  1  1
  1 25  1  0
  1 26  1  0
 22 52  1  1
 18 47  1  0
 18 48  1  0
 17 45  1  0
 17 46  1  0
 11 37  1  0
 11 38  1  0
 12 39  1  0
 12 40  1  0
 16 44  1  6
 14 41  1  0
 14 42  1  0
 14 43  1  0
 20 49  1  0
 20 50  1  0
 20 51  1  0
 10 34  1  0
 10 35  1  0
 10 36  1  0
  8 31  1  0
  8 32  1  0
  8 33  1  0
  6 29  1  0
M  END

View in JSmol View DFT Assignments 3D Conformers

Synonyms

Not Available

Chemical Formula

C₂₀H₂₈O₄

Average Mass

332.4400 Da

Monoisotopic Mass

332.19876 Da

IUPAC Name

(3R,5R,8R,10S,13S,14S,15S)-15-hydroxy-5,10,13,14-tetramethyl-17-methylidene-4,9-dioxatetracyclo[11.3.1.0^{3,5}.0^{8,10}]heptadec-1(16)-en-2-one

Traditional Name

(3R,5R,8R,10S,13S,14S,15S)-15-hydroxy-5,10,13,14-tetramethyl-17-methylidene-4,9-dioxatetracyclo[11.3.1.0^{3,5}.0^{8,10}]heptadec-1(16)-en-2-one

CAS Registry Number

Not Available

SMILES

[H]O[C@@]1([H])C([H])=C2C(=C([H])[H])[C@@](C([H])([H])[H])(C([H])([H])C([H])([H])[C@@]3(O[C@]3([H])C([H])([H])C([H])([H])[C@]3(O[C@@]3([H])C2=O)C([H])([H])[H])C([H])([H])[H])[C@]1([H])C([H])([H])[H]

InChI Identifier

InChI=1S/C20H28O4/c1-11-13-10-14(21)12(2)18(11,3)8-9-19(4)15(23-19)6-7-20(5)17(24-20)16(13)22/h10,12,14-15,17,21H,1,6-9H2,2-5H3/t12-,14+,15-,17+,18-,19+,20-/m1/s1

InChI Key

VFVFKTQEVKMQJC-NUBFLLSLSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 125 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 150 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 175 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 225 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 250 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Ishige okamurae	JEOL database	Ishino, M., et al, Tetrahedron 66, 2594 (2010)

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.71	ALOGPS
logP	2.67	ChemAxon
logS	-3.6	ALOGPS
pKa (Strongest Acidic)	14.49	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	62.36 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	91.58 m³·mol⁻¹	ChemAxon
Polarizability	36.23 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

Ishino, M., et al. (2010). Ishino, M., et al, Tetrahedron 66, 2594 (2010). Tetrahedron.

Showing NP-Card for phomactin I (NP0039188)

MOL for NP0039188 (phomactin I)

3D MOL for NP0039188 (phomactin I)

3D SDF for NP0039188 (phomactin I)

3D-SDF for NP0039188 (phomactin I)

PDB for NP0039188 (phomactin I)

3D PDB for NP0039188 (phomactin I)

SMILES for NP0039188 (phomactin I)

INCHI for NP0039188 (phomactin I)

Structure for NP0039188 (phomactin I)

3D Structure for NP0039188 (phomactin I)