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Record Information
Version2.0
Created at2021-06-20 21:38:19 UTC
Updated at2021-08-20 00:00:38 UTC
NP-MRD IDNP0039119
Secondary Accession NumbersNone
Natural Product Identification
Common Name10-deacetylbaccatin III, 10-DAB
Provided ByJEOL DatabaseJEOL Logo
Description10-Deacetylbaccatin III is a primary metabolite. Primary metabolites are metabolically or physiologically essential metabolites. They are directly involved in an organism’s growth, development or reproduction. 10-deacetylbaccatin III, 10-DAB is found in Corylus avellana, Curvularia lunata, Taxus canadensis, Taxus cuspidata , Taxus floridana, Taxus mairei, Taxus media, Taxus wallichiana and Taxus yunnanensis. 10-deacetylbaccatin III, 10-DAB was first documented in 2017 (PMID: 29552048). Based on a literature review a significant number of articles have been published on 10-deacetylbaccatin III (PMID: 34058663) (PMID: 33273486) (PMID: 33088661) (PMID: 32128278) (PMID: 31506091) (PMID: 31119478).
Structure
Thumb
Synonyms
ValueSource
10-Deacetylbaccatine IIIChEMBL, MeSH
10-Deacetyl-baccatine IIIMeSH
10-DB IIIMeSH
Chemical FormulaC29H36O10
Average Mass544.5901 Da
Monoisotopic Mass544.23085 Da
IUPAC Name(1S,2S,3R,4S,7R,9S,10S,12R,15S)-4-(acetyloxy)-1,9,12,15-tetrahydroxy-10,14,17,17-tetramethyl-11-oxo-6-oxatetracyclo[11.3.1.0^{3,10}.0^{4,7}]heptadec-13-en-2-yl benzoate
Traditional Name(1S,2S,3R,4S,7R,9S,10S,12R,15S)-4-(acetyloxy)-1,9,12,15-tetrahydroxy-10,14,17,17-tetramethyl-11-oxo-6-oxatetracyclo[11.3.1.0^{3,10}.0^{4,7}]heptadec-13-en-2-yl benzoate
CAS Registry NumberNot Available
SMILES
[H]O[C@]1([H])C(=C2[C@@]([H])(O[H])C(=O)[C@]3(C([H])([H])[H])[C@@]([H])(O[H])C([H])([H])[C@@]4([H])OC([H])([H])[C@@]4(OC(=O)C([H])([H])[H])[C@@]3([H])[C@]([H])(OC(=O)C3=C([H])C([H])=C([H])C([H])=C3[H])[C@](O[H])(C1([H])[H])C2(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H]
InChI Identifier
InChI=1S/C29H36O10/c1-14-17(31)12-29(36)24(38-25(35)16-9-7-6-8-10-16)22-27(5,23(34)21(33)20(14)26(29,3)4)18(32)11-19-28(22,13-37-19)39-15(2)30/h6-10,17-19,21-22,24,31-33,36H,11-13H2,1-5H3/t17-,18-,19+,21+,22-,24-,27+,28-,29+/m0/s1
InChI KeyYWLXLRUDGLRYDR-ZHPRIASZSA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 500 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 100 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 200 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 300 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 400 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 600 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 700 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 800 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 900 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 1000 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Cephalotaxus sinensisKNApSAcK Database
Corylus avellanaLOTUS Database
Curvularia lunataJEOL database
    • Amone, A., et al, J. Nat. Prod. 72, 2000 (2009)
Taxus baccataKNApSAcK Database
Taxus brevifoliaKNApSAcK Database
Taxus canadensisLOTUS Database
Taxus chinensisKNApSAcK Database
Taxus cuspidataPlant
Taxus floridanaLOTUS Database
Taxus fuanaKNApSAcK Database
Taxus maireiLOTUS Database
Taxus mediaLOTUS Database
Taxus sumatranaKNApSAcK Database
Taxus wallichianaLOTUS Database
Taxus wallichiana var. yunnanensisPlant
Taxus yunnanensisKNApSAcK Database
Chemical Taxonomy
DescriptionThis compound belongs to the class of organic compounds known as taxanes and derivatives. These are diterpenoids with a structure based either on the taxane skeleton, or a derivative thereof. In term of phytochemistry, several derivatives of the taxane skeleton exist: 2(3->20)-Abeotaxane, 3,11-cyclotaxane, 11(15->1),11(10->9)-abeotaxane, 3,8-seco-taxane, and 11(15->1)-abeotaxane, among others. More complex skeletons have been found recently, which include the taxane-derived [3.3.3] Propellane ring system.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassDiterpenoids
Direct ParentTaxanes and derivatives
Alternative Parents
Substituents
  • Taxane diterpenoid
  • Benzoate ester
  • Benzoic acid or derivatives
  • Benzoyl
  • Monocyclic benzene moiety
  • Benzenoid
  • Dicarboxylic acid or derivatives
  • Cyclic alcohol
  • Tertiary alcohol
  • Carboxylic acid ester
  • Secondary alcohol
  • Ketone
  • Oxetane
  • Ether
  • Dialkyl ether
  • Organoheterocyclic compound
  • Carboxylic acid derivative
  • Oxacycle
  • Polyol
  • Alcohol
  • Carbonyl group
  • Hydrocarbon derivative
  • Organic oxygen compound
  • Organooxygen compound
  • Organic oxide
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling Point716.84 °C. @ 760.00 mm Hg (est)The Good Scents Company Information System
Water Solubility83.38 mg/L @ 25 °C (est)The Good Scents Company Information System
LogP0.156 (est)The Good Scents Company Information System
Predicted Properties
PropertyValueSource
logP0.87ALOGPS
logP0.6ChemAxon
logS-3ALOGPS
pKa (Strongest Acidic)10.29ChemAxon
pKa (Strongest Basic)-3ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count8ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area159.82 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity136.2 m³·mol⁻¹ChemAxon
Polarizability54.49 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00035995
Chemspider ID135935
KEGG Compound IDC11700
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia Link10-Deacetylbaccatin
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI ID18193
Good Scents IDrw1665321
References
General References
  1. Ren S, Zhang M, Wang Y, Guo J, Wang J, Li Y, Ding N: Synthesis and biological evaluation of novel cabazitaxel analogues. Bioorg Med Chem. 2021 Jul 1;41:116224. doi: 10.1016/j.bmc.2021.116224. Epub 2021 May 23. [PubMed:34058663 ]
  2. Chakravarthi BVSK, Singh S, Kamalraj S, Gupta VK, Jayabaskaran C: Evaluation of spore inoculum and confirmation of pathway genetic blueprint of T13alphaH and DBAT from a Taxol-producing endophytic fungus. Sci Rep. 2020 Dec 3;10(1):21139. doi: 10.1038/s41598-020-77605-x. [PubMed:33273486 ]
  3. Sah B, Kumari M, Subban K, Chelliah J: Evaluation of the anticancer activity of enzymatically synthesized Baccatin III: an intermediate precursor of Taxol(R). 3 Biotech. 2020 Nov;10(11):465. doi: 10.1007/s13205-020-02457-1. Epub 2020 Oct 8. [PubMed:33088661 ]
  4. Toghueo RMK: Bioprospecting endophytic fungi from Fusarium genus as sources of bioactive metabolites. Mycology. 2019 Jul 31;11(1):1-21. doi: 10.1080/21501203.2019.1645053. eCollection 2020. [PubMed:32128278 ]
  5. Liu HL, Chang JJ, Thia C, Lin YJ, Lo SC, Huang CC, Li WH: Characterizing an engineered carotenoid-producing yeast as an anti-stress chassis for building cell factories. Microb Cell Fact. 2019 Sep 10;18(1):155. doi: 10.1186/s12934-019-1205-y. [PubMed:31506091 ]
  6. You LF, Wei T, Zheng QW, Jiang BH, Lin JF, Guo LQ: Optimization of Baccatin III Production by Cross-Linked Enzyme Aggregate of Taxoid 10beta-O-Acetyltransferase. Mol Biotechnol. 2019 Jul;61(7):498-505. doi: 10.1007/s12033-019-00179-1. [PubMed:31119478 ]
  7. Sah B, Subban K, Jayabaskaran C: Biochemical insights into the recombinant 10-deacetylbaccatin III-10-beta-O-acetyltransferase enzyme from the Taxol-producing endophytic fungus Lasiodiplodia theobromae. FEMS Microbiol Lett. 2019 Apr 1;366(7). pii: 5435445. doi: 10.1093/femsle/fnz072. [PubMed:31062024 ]
  8. Li BJ, Wang H, Gong T, Chen JJ, Chen TJ, Yang JL, Zhu P: Author Correction: Improving 10-deacetylbaccatin III-10-beta-O-acetyltransferase catalytic fitness for Taxol production. Nat Commun. 2018 Jul 13;9:16221. doi: 10.1038/ncomms16221. [PubMed:30004093 ]
  9. You LF, Huang JJ, Wei T, Lin SL, Jiang BH, Guo LQ, Lin JF: Enhanced catalytic activities and modified substrate preferences for taxoid 10beta-O-acetyl transferase mutants by engineering catalytic histidine residues. Biotechnol Lett. 2018 Aug;40(8):1245-1251. doi: 10.1007/s10529-018-2573-9. Epub 2018 Jun 4. [PubMed:29869304 ]
  10. You LF, Wei T, Zheng QW, Lin JF, Guo LQ, Jiang BH, Huang JJ: Activity Essential Residue Analysis of Taxoid 10beta-O-Acetyl Transferase for Enzymatic Synthesis of Baccatin. Appl Biochem Biotechnol. 2018 Dec;186(4):949-959. doi: 10.1007/s12010-018-2789-0. Epub 2018 May 25. [PubMed:29797298 ]
  11. Lin SL, Wei T, Lin JF, Guo LQ, Wu GP, Wei JB, Huang JJ, Ouyang PL: Bio-production of Baccatin III, an Important Precursor of Paclitaxel by a Cost-Effective Approach. Mol Biotechnol. 2018 Jul;60(7):492-505. doi: 10.1007/s12033-018-0090-7. [PubMed:29796788 ]
  12. Miao LY, Mo XC, Xi XY, Zhou L, De G, Ke YS, Liu P, Song FJ, Jin WW, Zhang P: Transcriptome analysis of a taxol-producing endophytic fungus Cladosporium cladosporioides MD2. AMB Express. 2018 Mar 19;8(1):41. doi: 10.1186/s13568-018-0567-6. [PubMed:29556854 ]
  13. Shirshekanb M, Rezadoost H, Javanbakht M, Ghassempour AR: The Combination Process for Preparative Separation and Purification of Paclitaxel and 10-Deacetylbaccatin III Using Diaion(R) Hp-20 Followed by Hydrophilic Interaction Based Solid Phase Extraction. Iran J Pharm Res. 2017 Fall;16(4):1396-1404. [PubMed:29552048 ]
  14. Amone, A., et al. (2009). Amone, A., et al, J. Nat. Prod. 72, 2000 (2009). J. Nat. Prod..