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Record Information
Version2.0
Created at2021-06-20 21:37:33 UTC
Updated at2021-06-30 00:12:15 UTC
NP-MRD IDNP0039102
Secondary Accession NumbersNone
Natural Product Identification
Common Namegrandifotane A
Provided ByJEOL DatabaseJEOL Logo
DescriptionGrandifotane A belongs to the class of organic compounds known as prostaglandins and related compounds. These are unsaturated carboxylic acids consisting of a 20 carbon skeleton that also contains a five member ring, and are based upon the fatty acid arachidonic acid. grandifotane A is found in Khaya grandifoliola. grandifotane A was first documented in 2010 (PMID: 20000624). Based on a literature review very few articles have been published on Grandifotane A.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC29H36O11
Average Mass560.5960 Da
Monoisotopic Mass560.22576 Da
IUPAC Namemethyl (2S)-2-[(1R,2S,6R,7S,10R,11S,12R,14S,15S)-14-(acetyloxy)-6-(furan-3-yl)-2-hydroxy-7,11,13,13-tetramethyl-4,16-dioxo-5,17-dioxapentacyclo[13.2.1.0^{1,10}.0^{2,7}.0^{11,15}]octadecan-12-yl]-2-hydroxyacetate
Traditional Name(S)-(methyl [(1R,2S,6R,7S,10R,11S,12R,14S,15S)-14-(acetyloxy)-6-(furan-3-yl)-2-hydroxy-7,11,13,13-tetramethyl-4,16-dioxo-5,17-dioxapentacyclo[13.2.1.0^{1,10}.0^{2,7}.0^{11,15}]octadecan-12-yl](hydroxy)acetate)
CAS Registry NumberNot Available
SMILES
[H]O[C@]([H])(C(=O)OC([H])([H])[H])[C@@]1([H])C(C([H])([H])[H])(C([H])([H])[H])[C@]([H])(OC(=O)C([H])([H])[H])[C@]23C(=O)O[C@]4(C2([H])[H])[C@]([H])(C([H])([H])C([H])([H])[C@@]2(C([H])([H])[H])[C@@]([H])(OC(=O)C([H])([H])[C@@]42O[H])C2=C([H])OC([H])=C2[H])[C@]13C([H])([H])[H]
InChI Identifier
InChI=1S/C29H36O11/c1-14(30)38-22-24(2,3)19(18(32)21(33)36-6)26(5)16-7-9-25(4)20(15-8-10-37-12-15)39-17(31)11-29(25,35)28(16)13-27(22,26)23(34)40-28/h8,10,12,16,18-20,22,32,35H,7,9,11,13H2,1-6H3/t16-,18+,19+,20+,22+,25+,26-,27+,28-,29+/m1/s1
InChI KeyVDCDOIQPTDMABK-QLFMBACMSA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 400 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 100 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 200 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 300 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 500 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 600 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 700 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 800 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 900 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 1000 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Khaya grandifoliolaJEOL database
    • Yuan, T., et al, Org. Lett. 12, 252 (2010)
Chemical Taxonomy
Description Belongs to the class of organic compounds known as prostaglandins and related compounds. These are unsaturated carboxylic acids consisting of a 20 carbon skeleton that also contains a five member ring, and are based upon the fatty acid arachidonic acid.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassEicosanoids
Direct ParentProstaglandins and related compounds
Alternative Parents
Substituents
  • Prostaglandin skeleton
  • Steroid lactone
  • 10-hydroxysteroid
  • Hydroxysteroid
  • 12-oxosteroid
  • Oxosteroid
  • 2-oxosteroid
  • 3-oxasteroid
  • Steroid
  • Tetracarboxylic acid or derivatives
  • Delta valerolactone
  • Delta_valerolactone
  • Gamma butyrolactone
  • Oxane
  • Tertiary alcohol
  • Cyclic alcohol
  • Furan
  • Tetrahydrofuran
  • Methyl ester
  • Heteroaromatic compound
  • Lactone
  • Secondary alcohol
  • Carboxylic acid ester
  • Carboxylic acid derivative
  • Oxacycle
  • Organoheterocyclic compound
  • Organic oxide
  • Organic oxygen compound
  • Carbonyl group
  • Alcohol
  • Organooxygen compound
  • Hydrocarbon derivative
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.54ALOGPS
logP1.33ChemAxon
logS-3.5ALOGPS
pKa (Strongest Acidic)12.32ChemAxon
pKa (Strongest Basic)-2.9ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area158.8 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity132.7 m³·mol⁻¹ChemAxon
Polarizability55.91 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID28287220
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound102171884
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Yuan T, Zhu RX, Zhang H, Odeku OA, Yang SP, Liao SG, Yue JM: Structure determination of grandifotane A from Khaya grandifoliola by NMR, X-ray diffraction, and ECD calculation. Org Lett. 2010 Jan 15;12(2):252-5. doi: 10.1021/ol902565s. [PubMed:20000624 ]
  2. Yuan, T., et al. (2010). Yuan, T., et al, Org. Lett. 12, 252 (2010). Org. Lett..