| Record Information |
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| Version | 2.0 |
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| Created at | 2021-06-20 21:27:43 UTC |
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| Updated at | 2021-06-30 00:11:55 UTC |
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| NP-MRD ID | NP0038889 |
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| Secondary Accession Numbers | None |
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| Natural Product Identification |
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| Common Name | oxalatrunculin B |
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| Provided By | JEOL Database |
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| Description | (4R)-3-hydroxy-4-[(1R,4Z,8Z,10S,13R,15R)-15-hydroxy-5,10-dimethyl-3-oxo-2,14-dioxabicyclo[11.3.1]Heptadeca-4,8-dien-15-yl]-1λ⁶,3-thiazolidine-1,1,2-trione belongs to the class of organic compounds known as macrolides and analogues. These are organic compounds containing a lactone ring of at least twelve members. oxalatrunculin B is found in Negombata corticata. oxalatrunculin B was first documented in 2007 (Ahmed, S. A., et al.). Based on a literature review very few articles have been published on (4R)-3-hydroxy-4-[(1R,4Z,8Z,10S,13R,15R)-15-hydroxy-5,10-dimethyl-3-oxo-2,14-dioxabicyclo[11.3.1]Heptadeca-4,8-dien-15-yl]-1λ⁶,3-thiazolidine-1,1,2-trione. |
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| Structure | [H]ON1C(=O)[S](=O)(=O)C([H])([H])[C@@]1([H])[C@]1(O[H])O[C@@]2([H])C([H])([H])[C@@]([H])(OC(=O)\C([H])=C(C([H])([H])[H])/C([H])([H])C([H])([H])\C([H])=C([H])/[C@@]([H])(C([H])([H])[H])C([H])([H])C2([H])[H])C1([H])[H] InChI=1S/C20H29NO8S/c1-13-5-3-4-6-14(2)9-18(22)28-16-10-15(8-7-13)29-20(24,11-16)17-12-30(26,27)19(23)21(17)25/h3,5,9,13,15-17,24-25H,4,6-8,10-12H2,1-2H3/b5-3-,14-9-/t13-,15-,16-,17+,20-/m1/s1 |
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| Synonyms | Not Available |
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| Chemical Formula | C20H29NO8S |
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| Average Mass | 443.5100 Da |
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| Monoisotopic Mass | 443.16139 Da |
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| IUPAC Name | (4R)-3-hydroxy-4-[(1R,4Z,8Z,10S,13R,15R)-15-hydroxy-5,10-dimethyl-3-oxo-2,14-dioxabicyclo[11.3.1]heptadeca-4,8-dien-15-yl]-1lambda6,3-thiazolidine-1,1,2-trione |
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| Traditional Name | (4R)-3-hydroxy-4-[(1R,4Z,8Z,10S,13R,15R)-15-hydroxy-5,10-dimethyl-3-oxo-2,14-dioxabicyclo[11.3.1]heptadeca-4,8-dien-15-yl]-1lambda6,3-thiazolidine-1,1,2-trione |
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| CAS Registry Number | Not Available |
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| SMILES | [H]ON1C(=O)[S](=O)(=O)C([H])([H])[C@@]1([H])[C@]1(O[H])O[C@@]2([H])C([H])([H])[C@@]([H])(OC(=O)\C([H])=C(C([H])([H])[H])/C([H])([H])C([H])([H])\C([H])=C([H])/[C@@]([H])(C([H])([H])[H])C([H])([H])C2([H])[H])C1([H])[H] |
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| InChI Identifier | InChI=1S/C20H29NO8S/c1-13-5-3-4-6-14(2)9-18(22)28-16-10-15(8-7-13)29-20(24,11-16)17-12-30(26,27)19(23)21(17)25/h3,5,9,13,15-17,24-25H,4,6-8,10-12H2,1-2H3/b5-3-,14-9-/t13-,15-,16-,17+,20-/m1/s1 |
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| InChI Key | IBVAIJGYBYPIEI-JRIKCGFMSA-N |
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| Experimental Spectra |
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| | Spectrum Type | Description | Depositor Email | Depositor Organization | Depositor | Deposition Date | View |
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| 1D NMR | 13C NMR Spectrum (1D, 400 MHz, CD3OD, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 400 MHz, CD3OD, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 100 MHz, CD3OD, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 100 MHz, CD3OD, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 200 MHz, CD3OD, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 200 MHz, CD3OD, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 300 MHz, CD3OD, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 300 MHz, CD3OD, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 500 MHz, CD3OD, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 500 MHz, CD3OD, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 600 MHz, CD3OD, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 600 MHz, CD3OD, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 700 MHz, CD3OD, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 700 MHz, CD3OD, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 800 MHz, CD3OD, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 800 MHz, CD3OD, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 900 MHz, CD3OD, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 900 MHz, CD3OD, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 1000 MHz, CD3OD, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 1000 MHz, CD3OD, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum |
| | Predicted Spectra |
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| Not Available | | Chemical Shift Submissions |
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| Not Available | | Species |
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| Species of Origin | | Species Name | Source | Reference |
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| Negombata corticata | JEOL database | - Ahmed, S. A., et al, Org. Lett. 9, 4773 (2007)
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as macrolides and analogues. These are organic compounds containing a lactone ring of at least twelve members. |
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| Kingdom | Organic compounds |
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| Super Class | Phenylpropanoids and polyketides |
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| Class | Macrolides and analogues |
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| Sub Class | Not Available |
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| Direct Parent | Macrolides and analogues |
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| Alternative Parents | |
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| Substituents | - Macrolide
- Oxane
- Sulfone
- Thiazolidine
- Enoate ester
- Alpha,beta-unsaturated carboxylic ester
- Carboxylic acid ester
- Hemiacetal
- Lactone
- Monocarboxylic acid or derivatives
- Carboxylic acid derivative
- Oxacycle
- Azacycle
- Organoheterocyclic compound
- Hydrocarbon derivative
- Organic oxide
- Organic oxygen compound
- Organooxygen compound
- Organonitrogen compound
- Organic nitrogen compound
- Carbonyl group
- Aliphatic heteropolycyclic compound
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| Molecular Framework | Aliphatic heteropolycyclic compounds |
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| External Descriptors | Not Available |
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| Physical Properties |
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| State | Not Available |
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| Experimental Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Predicted Properties | |
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