NP-MRD: Showing NP-Card for perifosaccharide B (NP0038392)

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Record Information

Version

2.0

Created at

2021-06-20 21:05:45 UTC

Updated at

2021-06-30 00:11:09 UTC

NP-MRD ID

NP0038392

Secondary Accession Numbers

None

Natural Product Identification

Common Name

perifosaccharide B

Provided By

JEOL Database JEOL Logo

Description

perifosaccharide B is found in Periploca forrestii. perifosaccharide B was first documented in 2009 (Guo, Z., et al.).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306202123053D          

105109  0  0  0  0            999 V2000
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    8.9686   -1.5221    5.8244 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.1045   -0.7240    4.9970 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.6892   -0.6421    5.5605 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.8127    0.2291    4.6533 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.0484   -0.6597    3.8351 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0326   -0.0044    3.0689 C   0  0  1  0  0  0  0  0  0  0  0  0
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    4.9690   -0.6764    0.8539 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3111   -1.0645    1.1151 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

105109  0  0  0  0  0  0  0  0999 V2000
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M  END


  Mrv1652306202123053D          

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M  END
> <DATABASE_ID>
NP0038392

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@@]1([H])C([H])([H])[C@]([H])(O[C@@]2([H])[C@]([H])(OC([H])([H])[H])C([H])([H])C(=O)O[C@]2([H])C([H])([H])[H])O[C@]([H])(C([H])([H])[H])[C@@]1([H])O[C@]1([H])O[C@]([H])(C([H])([H])[H])[C@@]([H])(O[C@]2([H])O[C@]([H])(C([H])([H])[H])[C@@]([H])(O[C@]3([H])O[C@]([H])(C([H])([H])[H])[C@@]([H])(O[H])[C@@]([H])(OC([H])([H])[H])C3([H])[H])[C@@]([H])(OC([H])([H])[H])C2([H])[H])[C@]([H])(O[H])C1([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C33H56O16/c1-14-29(37)21(38-6)12-27(42-14)49-33-18(5)45-28(13-23(33)40-8)47-31-16(3)43-25(9-19(31)34)46-30-15(2)44-26(10-20(30)35)48-32-17(4)41-24(36)11-22(32)39-7/h14-23,25-35,37H,9-13H2,1-8H3/t14-,15-,16-,17-,18-,19-,20+,21+,22-,23+,25+,26+,27+,28+,29-,30-,31-,32-,33-/m1/s1

> <INCHI_KEY>
YSVMKQYOKBQTQB-XFRBQHLCSA-N

> <FORMULA>
C33H56O16

> <MOLECULAR_WEIGHT>
708.795

> <EXACT_MASS>
708.356835723

> <JCHEM_ACCEPTOR_COUNT>
15

> <JCHEM_ATOM_COUNT>
105

> <JCHEM_AVERAGE_POLARIZABILITY>
75.97823729895316

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(4R,5R,6R)-5-{[(2S,4S,5S,6R)-4-hydroxy-5-{[(2S,4R,5S,6R)-4-hydroxy-5-{[(2S,4S,5R,6R)-5-{[(2S,4S,5R,6R)-5-hydroxy-4-methoxy-6-methyloxan-2-yl]oxy}-4-methoxy-6-methyloxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-4-methoxy-6-methyloxan-2-one

> <ALOGPS_LOGP>
0.26

> <JCHEM_LOGP>
1.6530242883333321

> <ALOGPS_LOGS>
-2.82

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.744518235373206

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.078183937898295

> <JCHEM_PKA_STRONGEST_BASIC>
-3.259345566777199

> <JCHEM_POLAR_SURFACE_AREA>
188.51999999999995

> <JCHEM_REFRACTIVITY>
163.58610000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
11

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.08e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(4R,5R,6R)-5-{[(2S,4S,5S,6R)-4-hydroxy-5-{[(2S,4R,5S,6R)-4-hydroxy-5-{[(2S,4S,5R,6R)-5-{[(2S,4S,5R,6R)-5-hydroxy-4-methoxy-6-methyloxan-2-yl]oxy}-4-methoxy-6-methyloxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-4-methoxy-6-methyloxan-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

105109  0  0  0  0  0  0  0  0999 V2000
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 48 46  1  0
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 45  5  1  0
 48 49  1  0
  3  2  1  0
 29 30  1  0
  2  1  1  0
 26 25  1  0
 30 31  2  0
 18 17  1  0
 34 35  1  0
 17 15  1  0
  9 10  1  0
 27 28  1  0
 24 25  1  0
 21 22  1  0
 37 38  1  0
 18 19  1  0
 40 41  1  0
 12 13  1  0
  8  9  1  0
 43 44  1  0
 46 47  1  0
  5  6  1  0
 26 77  1  1
 33 84  1  1
 32 82  1  0
 32 83  1  0
 28 79  1  0
 28 80  1  0
 28 81  1  0
 27 78  1  6
 22 73  1  0
 24 76  1  6
 20 71  1  1
 21 72  1  1
 23 74  1  0
 23 75  1  0
 38 89  1  0
 38 90  1  0
 38 91  1  0
 37 88  1  6
 18 70  1  1
 14 65  1  6
 15 66  1  1
 16 67  1  0
 17 68  1  0
 17 69  1  0
 41 93  1  0
 41 94  1  0
 41 95  1  0
 40 92  1  1
 12 64  1  6
  7 57  1  1
  8 58  1  1
 11 62  1  0
 11 63  1  0
 44 97  1  0
 44 98  1  0
 44 99  1  0
 43 96  1  6
  5 56  1  1
 48104  1  6
 49105  1  0
  3 53  1  6
  4 54  1  0
  4 55  1  0
 47101  1  0
 47102  1  0
 47103  1  0
 46100  1  1
  1 50  1  0
  1 51  1  0
  1 52  1  0
 35 85  1  0
 35 86  1  0
 35 87  1  0
 10 59  1  0
 10 60  1  0
 10 61  1  0
M  END

HEADER    PROTEIN                                 20-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-JUN-21         0                                  
HETATM    1  C   UNK     0       8.784  -2.921   5.639  0.00  0.00           C+0
HETATM    2  O   UNK     0       8.969  -1.522   5.824  0.00  0.00           O+0
HETATM    3  C   UNK     0       8.104  -0.724   4.997  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.689  -0.642   5.561  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.813   0.229   4.653  0.00  0.00           C+0
HETATM    6  O   UNK     0       5.048  -0.660   3.835  0.00  0.00           O+0
HETATM    7  C   UNK     0       4.033  -0.004   3.069  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.515   0.425   1.661  0.00  0.00           C+0
HETATM    9  O   UNK     0       4.969  -0.676   0.854  0.00  0.00           O+0
HETATM   10  C   UNK     0       6.311  -1.065   1.115  0.00  0.00           C+0
HETATM   11  C   UNK     0       3.335   1.039   0.908  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.159   0.065   0.869  0.00  0.00           C+0
HETATM   13  O   UNK     0       1.077   0.736   0.221  0.00  0.00           O+0
HETATM   14  C   UNK     0      -0.029  -0.124  -0.097  0.00  0.00           C+0
HETATM   15  C   UNK     0      -1.188   0.145   0.883  0.00  0.00           C+0
HETATM   16  O   UNK     0      -0.903  -0.361   2.188  0.00  0.00           O+0
HETATM   17  C   UNK     0      -2.476  -0.509   0.406  0.00  0.00           C+0
HETATM   18  C   UNK     0      -2.783  -0.110  -1.029  0.00  0.00           C+0
HETATM   19  O   UNK     0      -3.945  -0.824  -1.436  0.00  0.00           O+0
HETATM   20  C   UNK     0      -4.667  -0.238  -2.528  0.00  0.00           C+0
HETATM   21  C   UNK     0      -3.842  -0.151  -3.829  0.00  0.00           C+0
HETATM   22  O   UNK     0      -3.214  -1.407  -4.099  0.00  0.00           O+0
HETATM   23  C   UNK     0      -4.710   0.230  -5.019  0.00  0.00           C+0
HETATM   24  C   UNK     0      -5.936  -0.670  -5.106  0.00  0.00           C+0
HETATM   25  O   UNK     0      -6.730  -0.200  -6.199  0.00  0.00           O+0
HETATM   26  C   UNK     0      -7.924  -0.979  -6.402  0.00  0.00           C+0
HETATM   27  C   UNK     0      -8.107  -1.153  -7.915  0.00  0.00           C+0
HETATM   28  C   UNK     0      -9.082  -2.261  -8.303  0.00  0.00           C+0
HETATM   29  O   UNK     0      -8.511   0.053  -8.597  0.00  0.00           O+0
HETATM   30  C   UNK     0      -9.323   0.970  -8.033  0.00  0.00           C+0
HETATM   31  O   UNK     0      -9.926   1.782  -8.733  0.00  0.00           O+0
HETATM   32  C   UNK     0      -9.346   1.075  -6.536  0.00  0.00           C+0
HETATM   33  C   UNK     0      -9.114  -0.230  -5.796  0.00  0.00           C+0
HETATM   34  O   UNK     0     -10.323  -0.997  -5.824  0.00  0.00           O+0
HETATM   35  C   UNK     0     -10.421  -1.922  -4.747  0.00  0.00           C+0
HETATM   36  O   UNK     0      -6.677  -0.589  -3.891  0.00  0.00           O+0
HETATM   37  C   UNK     0      -5.930  -1.090  -2.776  0.00  0.00           C+0
HETATM   38  C   UNK     0      -6.863  -1.074  -1.568  0.00  0.00           C+0
HETATM   39  O   UNK     0      -1.694  -0.492  -1.866  0.00  0.00           O+0
HETATM   40  C   UNK     0      -0.488   0.203  -1.531  0.00  0.00           C+0
HETATM   41  C   UNK     0       0.567  -0.199  -2.557  0.00  0.00           C+0
HETATM   42  O   UNK     0       1.768  -0.281   2.196  0.00  0.00           O+0
HETATM   43  C   UNK     0       2.821  -0.945   2.912  0.00  0.00           C+0
HETATM   44  C   UNK     0       2.249  -1.356   4.266  0.00  0.00           C+0
HETATM   45  O   UNK     0       6.576   1.101   3.823  0.00  0.00           O+0
HETATM   46  C   UNK     0       7.647   1.733   4.527  0.00  0.00           C+0
HETATM   47  C   UNK     0       8.245   2.796   3.614  0.00  0.00           C+0
HETATM   48  C   UNK     0       8.705   0.696   4.940  0.00  0.00           C+0
HETATM   49  O   UNK     0       9.217   1.059   6.232  0.00  0.00           O+0
HETATM   50  H   UNK     0       8.948  -3.195   4.592  0.00  0.00           H+0
HETATM   51  H   UNK     0       9.522  -3.445   6.253  0.00  0.00           H+0
HETATM   52  H   UNK     0       7.788  -3.232   5.960  0.00  0.00           H+0
HETATM   53  H   UNK     0       8.082  -1.139   3.981  0.00  0.00           H+0
HETATM   54  H   UNK     0       6.248  -1.635   5.700  0.00  0.00           H+0
HETATM   55  H   UNK     0       6.736  -0.199   6.564  0.00  0.00           H+0
HETATM   56  H   UNK     0       5.128   0.818   5.276  0.00  0.00           H+0
HETATM   57  H   UNK     0       3.689   0.896   3.598  0.00  0.00           H+0
HETATM   58  H   UNK     0       5.312   1.173   1.721  0.00  0.00           H+0
HETATM   59  H   UNK     0       6.627  -1.740   0.315  0.00  0.00           H+0
HETATM   60  H   UNK     0       6.385  -1.612   2.056  0.00  0.00           H+0
HETATM   61  H   UNK     0       6.983  -0.201   1.118  0.00  0.00           H+0
HETATM   62  H   UNK     0       3.028   1.970   1.401  0.00  0.00           H+0
HETATM   63  H   UNK     0       3.621   1.300  -0.119  0.00  0.00           H+0
HETATM   64  H   UNK     0       2.420  -0.837   0.301  0.00  0.00           H+0
HETATM   65  H   UNK     0       0.259  -1.182  -0.030  0.00  0.00           H+0
HETATM   66  H   UNK     0      -1.334   1.227   0.993  0.00  0.00           H+0
HETATM   67  H   UNK     0       0.041  -0.162   2.371  0.00  0.00           H+0
HETATM   68  H   UNK     0      -2.382  -1.601   0.481  0.00  0.00           H+0
HETATM   69  H   UNK     0      -3.311  -0.249   1.068  0.00  0.00           H+0
HETATM   70  H   UNK     0      -2.959   0.971  -1.099  0.00  0.00           H+0
HETATM   71  H   UNK     0      -4.981   0.777  -2.248  0.00  0.00           H+0
HETATM   72  H   UNK     0      -3.041   0.590  -3.729  0.00  0.00           H+0
HETATM   73  H   UNK     0      -2.630  -1.569  -3.326  0.00  0.00           H+0
HETATM   74  H   UNK     0      -5.033   1.274  -4.911  0.00  0.00           H+0
HETATM   75  H   UNK     0      -4.142   0.165  -5.954  0.00  0.00           H+0
HETATM   76  H   UNK     0      -5.644  -1.709  -5.304  0.00  0.00           H+0
HETATM   77  H   UNK     0      -7.803  -1.972  -5.955  0.00  0.00           H+0
HETATM   78  H   UNK     0      -7.129  -1.409  -8.342  0.00  0.00           H+0
HETATM   79  H   UNK     0     -10.120  -1.986  -8.098  0.00  0.00           H+0
HETATM   80  H   UNK     0      -9.029  -2.440  -9.383  0.00  0.00           H+0
HETATM   81  H   UNK     0      -8.849  -3.199  -7.789  0.00  0.00           H+0
HETATM   82  H   UNK     0     -10.323   1.484  -6.251  0.00  0.00           H+0
HETATM   83  H   UNK     0      -8.576   1.806  -6.261  0.00  0.00           H+0
HETATM   84  H   UNK     0      -8.908   0.044  -4.755  0.00  0.00           H+0
HETATM   85  H   UNK     0     -10.410  -1.396  -3.787  0.00  0.00           H+0
HETATM   86  H   UNK     0      -9.611  -2.656  -4.784  0.00  0.00           H+0
HETATM   87  H   UNK     0     -11.372  -2.454  -4.839  0.00  0.00           H+0
HETATM   88  H   UNK     0      -5.656  -2.136  -2.966  0.00  0.00           H+0
HETATM   89  H   UNK     0      -7.768  -1.655  -1.780  0.00  0.00           H+0
HETATM   90  H   UNK     0      -6.384  -1.494  -0.679  0.00  0.00           H+0
HETATM   91  H   UNK     0      -7.192  -0.054  -1.342  0.00  0.00           H+0
HETATM   92  H   UNK     0      -0.658   1.283  -1.639  0.00  0.00           H+0
HETATM   93  H   UNK     0       0.213   0.017  -3.571  0.00  0.00           H+0
HETATM   94  H   UNK     0       1.510   0.333  -2.399  0.00  0.00           H+0
HETATM   95  H   UNK     0       0.760  -1.277  -2.517  0.00  0.00           H+0
HETATM   96  H   UNK     0       3.102  -1.863   2.379  0.00  0.00           H+0
HETATM   97  H   UNK     0       1.359  -1.980   4.129  0.00  0.00           H+0
HETATM   98  H   UNK     0       2.976  -1.918   4.860  0.00  0.00           H+0
HETATM   99  H   UNK     0       1.931  -0.478   4.839  0.00  0.00           H+0
HETATM  100  H   UNK     0       7.235   2.244   5.407  0.00  0.00           H+0
HETATM  101  H   UNK     0       7.480   3.528   3.331  0.00  0.00           H+0
HETATM  102  H   UNK     0       9.069   3.323   4.103  0.00  0.00           H+0
HETATM  103  H   UNK     0       8.611   2.352   2.682  0.00  0.00           H+0
HETATM  104  H   UNK     0       9.564   0.689   4.259  0.00  0.00           H+0
HETATM  105  H   UNK     0       9.596   0.229   6.591  0.00  0.00           H+0
CONECT    1    2   50   51   52                                             
CONECT    2    3    1                                                       
CONECT    3    4   48    2   53                                             
CONECT    4    5    3   54   55                                             
CONECT    5    4   45    6   56                                             
CONECT    6    7    5                                                       
CONECT    7    8   43    6   57                                             
CONECT    8   11    7    9   58                                             
CONECT    9   10    8                                                       
CONECT   10    9   59   60   61                                             
CONECT   11   12    8   62   63                                             
CONECT   12   11   42   13   64                                             
CONECT   13   14   12                                                       
CONECT   14   15   40   13   65                                             
CONECT   15   14   16   17   66                                             
CONECT   16   15   67                                                       
CONECT   17   18   15   68   69                                             
CONECT   18   39   17   19   70                                             
CONECT   19   20   18                                                       
CONECT   20   21   37   19   71                                             
CONECT   21   23   20   22   72                                             
CONECT   22   21   73                                                       
CONECT   23   24   21   74   75                                             
CONECT   24   23   36   25   76                                             
CONECT   25   26   24                                                       
CONECT   26   33   27   25   77                                             
CONECT   27   26   29   28   78                                             
CONECT   28   27   79   80   81                                             
CONECT   29   27   30                                                       
CONECT   30   32   29   31                                                  
CONECT   31   30                                                            
CONECT   32   30   33   82   83                                             
CONECT   33   34   32   26   84                                             
CONECT   34   33   35                                                       
CONECT   35   34   85   86   87                                             
CONECT   36   37   24                                                       
CONECT   37   20   36   38   88                                             
CONECT   38   37   89   90   91                                             
CONECT   39   40   18                                                       
CONECT   40   14   39   41   92                                             
CONECT   41   40   93   94   95                                             
CONECT   42   43   12                                                       
CONECT   43    7   42   44   96                                             
CONECT   44   43   97   98   99                                             
CONECT   45   46    5                                                       
CONECT   46   48   45   47  100                                             
CONECT   47   46  101  102  103                                             
CONECT   48    3   46   49  104                                             
CONECT   49   48  105                                                       
CONECT   50    1                                                            
CONECT   51    1                                                            
CONECT   52    1                                                            
CONECT   53    3                                                            
CONECT   54    4                                                            
CONECT   55    4                                                            
CONECT   56    5                                                            
CONECT   57    7                                                            
CONECT   58    8                                                            
CONECT   59   10                                                            
CONECT   60   10                                                            
CONECT   61   10                                                            
CONECT   62   11                                                            
CONECT   63   11                                                            
CONECT   64   12                                                            
CONECT   65   14                                                            
CONECT   66   15                                                            
CONECT   67   16                                                            
CONECT   68   17                                                            
CONECT   69   17                                                            
CONECT   70   18                                                            
CONECT   71   20                                                            
CONECT   72   21                                                            
CONECT   73   22                                                            
CONECT   74   23                                                            
CONECT   75   23                                                            
CONECT   76   24                                                            
CONECT   77   26                                                            
CONECT   78   27                                                            
CONECT   79   28                                                            
CONECT   80   28                                                            
CONECT   81   28                                                            
CONECT   82   32                                                            
CONECT   83   32                                                            
CONECT   84   33                                                            
CONECT   85   35                                                            
CONECT   86   35                                                            
CONECT   87   35                                                            
CONECT   88   37                                                            
CONECT   89   38                                                            
CONECT   90   38                                                            
CONECT   91   38                                                            
CONECT   92   40                                                            
CONECT   93   41                                                            
CONECT   94   41                                                            
CONECT   95   41                                                            
CONECT   96   43                                                            
CONECT   97   44                                                            
CONECT   98   44                                                            
CONECT   99   44                                                            
CONECT  100   46                                                            
CONECT  101   47                                                            
CONECT  102   47                                                            
CONECT  103   47                                                            
CONECT  104   48                                                            
CONECT  105   49                                                            
MASTER        0    0    0    0    0    0    0    0  105    0  218    0
END

RDKit          3D

105109  0  0  0  0  0  0  0  0999 V2000
    8.7844   -2.9208    5.6386 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9686   -1.5221    5.8244 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.1045   -0.7240    4.9970 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.6892   -0.6421    5.5605 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8127    0.2291    4.6533 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.0484   -0.6597    3.8351 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0326   -0.0044    3.0689 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.5149    0.4252    1.6608 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.9690   -0.6764    0.8539 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3111   -1.0645    1.1151 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3348    1.0389    0.9076 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1587    0.0649    0.8686 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0771    0.7357    0.2207 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0287   -0.1238   -0.0972 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.1881    0.1453    0.8829 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9032   -0.3612    2.1884 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4764   -0.5087    0.4060 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7827   -0.1103   -1.0290 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.9446   -0.8238   -1.4361 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6671   -0.2376   -2.5282 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.8422   -0.1505   -3.8291 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.2143   -1.4074   -4.0991 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7102    0.2303   -5.0186 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9364   -0.6695   -5.1059 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.7296   -0.1998   -6.1989 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9236   -0.9785   -6.4018 C   0  0  2  0  0  0  0  0  0  0  0  0
   -8.1070   -1.1533   -7.9146 C   0  0  1  0  0  0  0  0  0  0  0  0
   -9.0820   -2.2611   -8.3027 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5107    0.0526   -8.5967 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.3232    0.9704   -8.0331 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9263    1.7815   -8.7331 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.3460    1.0750   -6.5358 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1136   -0.2298   -5.7963 C   0  0  1  0  0  0  0  0  0  0  0  0
  -10.3235   -0.9969   -5.8238 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4208   -1.9222   -4.7466 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6769   -0.5891   -3.8908 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9301   -1.0897   -2.7762 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.8634   -1.0740   -1.5683 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6935   -0.4922   -1.8660 O   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₃H₅₆O₁₆

Average Mass

708.7950 Da

Monoisotopic Mass

708.35684 Da

IUPAC Name

(4R,5R,6R)-5-{[(2S,4S,5S,6R)-4-hydroxy-5-{[(2S,4R,5S,6R)-4-hydroxy-5-{[(2S,4S,5R,6R)-5-{[(2S,4S,5R,6R)-5-hydroxy-4-methoxy-6-methyloxan-2-yl]oxy}-4-methoxy-6-methyloxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-4-methoxy-6-methyloxan-2-one

Traditional Name

CAS Registry Number

Not Available

SMILES

[H]O[C@@]1([H])C([H])([H])[C@]([H])(O[C@@]2([H])[C@]([H])(OC([H])([H])[H])C([H])([H])C(=O)O[C@]2([H])C([H])([H])[H])O[C@]([H])(C([H])([H])[H])[C@@]1([H])O[C@]1([H])O[C@]([H])(C([H])([H])[H])[C@@]([H])(O[C@]2([H])O[C@]([H])(C([H])([H])[H])[C@@]([H])(O[C@]3([H])O[C@]([H])(C([H])([H])[H])[C@@]([H])(O[H])[C@@]([H])(OC([H])([H])[H])C3([H])[H])[C@@]([H])(OC([H])([H])[H])C2([H])[H])[C@]([H])(O[H])C1([H])[H]

InChI Identifier

InChI=1S/C33H56O16/c1-14-29(37)21(38-6)12-27(42-14)49-33-18(5)45-28(13-23(33)40-8)47-31-16(3)43-25(9-19(31)34)46-30-15(2)44-26(10-20(30)35)48-32-17(4)41-24(36)11-22(32)39-7/h14-23,25-35,37H,9-13H2,1-8H3/t14-,15-,16-,17-,18-,19-,20+,21+,22-,23+,25+,26+,27+,28+,29-,30-,31-,32-,33-/m1/s1

InChI Key

YSVMKQYOKBQTQB-XFRBQHLCSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Periploca forrestii	JEOL database	Guo, Z., et al, Magn. Reson. Chem. 47, 613 (2009)

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.26	ALOGPS
logP	1.65	ChemAxon
logS	-2.8	ALOGPS
pKa (Strongest Acidic)	13.08	ChemAxon
pKa (Strongest Basic)	-3.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	15	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	188.52 Å²	ChemAxon
Rotatable Bond Count	11	ChemAxon
Refractivity	163.59 m³·mol⁻¹	ChemAxon
Polarizability	75.98 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

Not Available

References

General References

Guo, Z., et al. (2009). Guo, Z., et al, Magn. Reson. Chem. 47, 613 (2009). Mag. Reson. Chem..

Showing NP-Card for perifosaccharide B (NP0038392)

MOL for NP0038392 (perifosaccharide B)

3D MOL for NP0038392 (perifosaccharide B)

3D SDF for NP0038392 (perifosaccharide B)

3D-SDF for NP0038392 (perifosaccharide B)

PDB for NP0038392 (perifosaccharide B)

3D PDB for NP0038392 (perifosaccharide B)

SMILES for NP0038392 (perifosaccharide B)

INCHI for NP0038392 (perifosaccharide B)

Structure for NP0038392 (perifosaccharide B)

3D Structure for NP0038392 (perifosaccharide B)